Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

37587426 .. 37589110

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGTTGTTGGATTTACTGATGATTTCACAATGACAGTGTTGAACATTTCAAGTCTGCCAATGTTTCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTTTATCAGGCGCTTCAAGACAGTTCTTGAAACACTTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

51

Amino Acids

5.98

Weight (kDa)

5.05

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	4 cut(s)	43, 51, 127, 140
AluBI	AGCT	2 cut(s)	100, 104
AluI	AGCT	2 cut(s)	100, 104
AspLEI	GCGC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	124
BmtI	GCTAGC	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	110
BspOI	GCTAGC	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	37, 133
BstC8I	GCNNGC	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	123
CviJI	RGCY	2 cut(s)	100, 104
CviKI_1	RGCY	2 cut(s)	100, 104
FspBI	CTAG	1 cut(s)	101
FspEI	CC	8 cut(s)	66, 67, 68, 72, 74, 80, 90, 103
GlaI	GCGC	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	124
HhaI	GCGC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	119
Hpy188III	TCNNGA	2 cut(s)	127, 137
HpyCH4III	ACNGT	2 cut(s)	37, 133
HspAI	GCGC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	2 cut(s)	90, 103
MaeI	CTAG	1 cut(s)	101
MnlI	CCTC	1 cut(s)	88
NheI	GCTAGC	1 cut(s)	100
SetI	ASST	3 cut(s)	93, 102, 106
SgeI	CNNG	6 cut(s)	63, 113, 117, 130, 139, 149
SspMI	CTAG	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	37, 133
TscAI	CASTG	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	42
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.