Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

39526817 .. 39529838

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG347300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCTCGAGGGTTTTGGTTGGCATTCGTAAGCTGCTTGCTGGAACTTCAATCCCAACCTCCCAATCATCGTACAGACCCTTCTCCACTTTAGCCGTCGATGGCCGAGCTTCTACAACCAAGGATTTGAGGCGCCTCTCCTCAATGGTTCCATTGCAACCCATTTACGGACATTCAGGGGATTTGACATTCCGTAAAATTCGAGATACATCTTTGCAAGCAGTCTGCTGCTTCTATAGCGCGAATGACTTTAGGTATAGGTACGCACCTCCAATCATTCAAAGGCTAGTGCACCAATTCCCTCCTGTAAAAGCATTTCATTTTGTCATTGAAGACGACAATGATGAGGATTTATCTGATGATTTCACAATGACAGTGTTGAACATTTCAAGTCTGGTAAAAGACTTCTTTTTTTTTTTTTTCATTTTTGGATGCAATGTCATAACCAAGTGCTCTTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.49

Weight (kDa)

8.75

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	132
AccII	CGCG	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	133
AfaI	GTAC	2 cut(s)	74, 263
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	5 cut(s)	51, 281, 332, 382, 390
AluBI	AGCT	2 cut(s)	34, 110
AluI	AGCT	2 cut(s)	34, 110
Alw21I	GWGCWC	2 cut(s)	294, 455
Alw44I	GTGCAC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	2 cut(s)	3, 103
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	34, 228
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	135, 242
AvaI	CYCGRG	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	132
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	294, 455
BbvI	GCAGC	2 cut(s)	21, 215
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	235
BfoI	RGCGCY	1 cut(s)	136
BisI	GCNGC	2 cut(s)	35, 229
BlsI	GCNGC	2 cut(s)	36, 230
BmeT110I	CYCGRG	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	134, 150
BmsI	GCATC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse3DI	GCAATG	2 cut(s)	152, 442
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	2 cut(s)	152, 442
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	21, 215
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	5, 105
BshNI	GGYRCC	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	294, 455
BsiHKCI	CYCGRG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	5, 105
BsoBI	CYCGRG	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	294, 455
BspANI	GGCC	2 cut(s)	5, 105
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	134, 150
BspT107I	GGYRCC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	152, 442
BssECI	CCNNGG	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	39, 219
BstF5I	GGATG	1 cut(s)	437
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	21, 215
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	5, 105
BtsCI	GGATG	1 cut(s)	437
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	39, 219
CfoI	GCGC	2 cut(s)	135, 242
Csp6I	GTAC	2 cut(s)	73, 262
CviJI	RGCY	6 cut(s)	5, 34, 95, 105, 110, 286
CviKI_1	RGCY	6 cut(s)	5, 34, 95, 105, 110, 286
CviQI	GTAC	2 cut(s)	73, 262
DinI	GGCGCC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	134
EheI	GGCGCC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	120
FaiI	YATR	3 cut(s)	237, 258, 443
Fnu4HI	GCNGC	2 cut(s)	35, 229
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	35, 229
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	2 cut(s)	134, 241
GluI	GCNGC	2 cut(s)	35, 229
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	5, 105
HhaI	GCGC	2 cut(s)	135, 242
Hin1I	GRCGYC	1 cut(s)	133
Hin6I	GCGC	2 cut(s)	133, 240
HinP1I	GCGC	2 cut(s)	133, 240
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	4 cut(s)	157, 217, 292, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	133
HspAI	GCGC	2 cut(s)	133, 240
KasI	GGCGCC	1 cut(s)	132
LpnPI	CCDG	4 cut(s)	27, 162, 318, 380
Lsp1109I	GCAGC	2 cut(s)	21, 215
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	287
MboII	GAAGA	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	294, 455
MluCI	AATT	2 cut(s)	198, 296
Mly113I	GGCGCC	1 cut(s)	133
MnlI	CCTC	9 cut(s)	3, 16, 70, 123, 146, 151, 279, 312, 340
MseI	TTAA	1 cut(s)	463
Mva1269I	GAATGC	1 cut(s)	24
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	237
NarI	GGCGCC	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	134, 150
NmeAIII	GCCGAG	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	7
PctI	GAATGC	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	36, 230
PluTI	GGCGCC	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	134, 150
PspXI	VCTCGAGB	1 cut(s)	7
RsaI	GTAC	2 cut(s)	74, 263
RsaNI	GTAC	2 cut(s)	73, 262
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	2 cut(s)	35, 229
SduI	GDGCHC	2 cut(s)	294, 455
SetI	ASST	6 cut(s)	36, 62, 112, 257, 263, 271
SfaNI	GCATC	1 cut(s)	422
SfcI	CTRYAG	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	134
Sfr274I	CTCGAG	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	2 cut(s)	198, 296
SspDI	GGCGCC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	3 cut(s)	8, 99, 202
TasI	AATT	2 cut(s)	198, 296
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	2 cut(s)	34, 228
TspDTI	ATGAA	2 cut(s)	308, 412
TspGWI	ACGGA	2 cut(s)	182, 183
TspRI	CASTG	1 cut(s)	381
VneI	GTGCAC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	7
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.