Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Forward (+)

11042660 .. 11091023

Gene Structure 48364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCTCGAGGGTTTTGGTTGGCATTCGTAAGCTGGTTGCTGGAACTTCAATCCCAACCTCCCAATCATCTTACAGACCCCTCCGCACTTTAGCCGTCGCTGGCCGAGATTCTAGAGCCAAGGATTTGAGGCGCCTCGCCTCATTGATTCCATTGCAACCCATTTACGGACATTCAGGGGATTTGACATTCGATAAAATTCGAGATACATCTTTGCAAGCAGTCTGCTGCTTCTATGGCACGAGTGACTATAGGTATAGGTACGCACCTCCAATCATTCAAAGGCTAGTGGACCAATTCCCTCCTGTAAAAGCATTTCATTTTGTCATTGAAGACGACAATGATGAGGATTTATCTGATGATTTCACAATGACAGTGTTGAACATTTCAAGTCTGCCAATGTTTCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTTTATCAGGCGCTTCAAGACAGTTCTTGAAAAACTTTACAACCCTCAAAAAGTTGGCACAAAAGCCCAGGAAAATGTGATGCGTGAAGGCATTGTTGGAGGAAGGAACAAGGAGGAACAAATGATTGGCCTCATGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

196

Amino Acids

22.26

Weight (kDa)

7.75

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	132
AciI	CCGC	1 cut(s)	85
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	133
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	7 cut(s)	51, 281, 332, 382, 390, 466, 479
AjnI	CCWGG	1 cut(s)	516
AjuI	GAANNNNNNNTTGG	4 cut(s)	528, 558, 560, 590
AluBI	AGCT	3 cut(s)	34, 439, 443
AluI	AGCT	3 cut(s)	34, 439, 443
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	3 cut(s)	3, 103, 577
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	135, 462
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	458
AsuNHI	GCTAGC	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	518
BfaI	CTAG	3 cut(s)	114, 287, 440
BfmI	CTRYAG	1 cut(s)	250
BfoI	RGCGCY	2 cut(s)	136, 463
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	518
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	519
BmtI	GCTAGC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	120, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	2 cut(s)	120, 516
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	3 cut(s)	5, 105, 579
BshNI	GGYRCC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	5, 105, 579
BsoBI	CYCGRG	1 cut(s)	7
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	3 cut(s)	5, 105, 579
BspLI	GGNNCC	1 cut(s)	134
BspOI	GCTAGC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	120, 516
BssNI	GRCGYC	1 cut(s)	133
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	2 cut(s)	376, 472
BstACI	GRCGYC	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	103, 219, 441
BstH2I	RGCGCY	2 cut(s)	136, 463
BstHHI	GCGC	2 cut(s)	135, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	516
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	5, 105, 579
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	3 cut(s)	103, 219, 441
CfoI	GCGC	2 cut(s)	135, 462
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	583
CviQI	GTAC	1 cut(s)	262
DinI	GGCGCC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	134
EheI	GGCGCC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	586
FaiI	YATR	4 cut(s)	237, 252, 258, 584
FatI	CATG	1 cut(s)	582
Fnu4HI	GCNGC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	3 cut(s)	114, 287, 440
GlaI	GCGC	2 cut(s)	134, 461
GluI	GCNGC	1 cut(s)	229
HaeII	RGCGCY	2 cut(s)	136, 463
HaeIII	GGCC	3 cut(s)	5, 105, 579
HhaI	GCGC	2 cut(s)	135, 462
Hin1I	GRCGYC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	586
Hin6I	GCGC	2 cut(s)	133, 460
HinP1I	GCGC	2 cut(s)	133, 460
HinfI	GANTC	2 cut(s)	110, 148
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	4 cut(s)	114, 203, 466, 476
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	530, 546
HpyCH4III	ACNGT	2 cut(s)	376, 472
HpyCH4V	TGCA	2 cut(s)	157, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	586
HspAI	GCGC	2 cut(s)	133, 460
KasI	GGCGCC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	9 cut(s)	20, 27, 87, 162, 318, 429, 442, 503, 530
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	3 cut(s)	114, 287, 440
MaeIII	GTNAC	1 cut(s)	245
MboII	GAAGA	1 cut(s)	344
MluCI	AATT	2 cut(s)	198, 296
Mly113I	GGCGCC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	526
MspR9I	CCNGG	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	1 cut(s)	237
NarI	GGCGCC	1 cut(s)	133
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	1 cut(s)	586
NlaIV	GGNNCC	1 cut(s)	134
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	7
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	110, 148
PkrI	GCNGC	1 cut(s)	230
PluTI	GGCGCC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	292
PspXI	VCTCGAGB	1 cut(s)	7
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SatI	GCNGC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	518
SetI	ASST	8 cut(s)	36, 62, 257, 263, 271, 432, 441, 445
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	250
SfoI	GGCGCC	1 cut(s)	134
Sfr274I	CTCGAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	2 cut(s)	198, 296
SsiI	CCGC	1 cut(s)	85
SspDI	GGCGCC	1 cut(s)	132
SspMI	CTAG	3 cut(s)	114, 287, 440
StyD4I	CCNGG	1 cut(s)	516
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	376, 472
TaqI	TCGA	3 cut(s)	8, 192, 202
TasI	AATT	2 cut(s)	198, 296
TfiI	GAWTC	2 cut(s)	110, 148
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	308, 395
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	198
XbaI	TCTAGA	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	7
XspI	CTAG	3 cut(s)	114, 287, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.