Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Forward (+)

11218462 .. 11220480

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCCTCGAGGGTTTTGGTTGGCATTCGTAAGCTGCTTGCTGGAACTTCAATCCCAACCTCCCAATCATCGTACAGACCCTTCTCCACTTTAGCCGTCGATGGCCGAGATTCTATAACCAAGGATTTGAGGCGTCTCTCCTCAACGGTTCCATTGCAACCCATTTGCGGACATTCAGGGGATTTGACATTCCATAAAATTCGAGATACATCTTTGCAAGCAGTCTGCTGCTTCTATAGCGCGAATGACTTTACCTATAGGTACGCACCTCCAATCATTCAAAGGCTGGTGGACCAATTCCCTTCTGTAAAAGCATTTCATTTTGATTTATCTGATGATTTCACAATGACAGCGTTGAACATTTCAAGTCTGCCAATGTTTCATTTCTATCAAAATGGGGAAAAGGTTGAGGAGCTAGCTGCTGATTTTATCAGGCGCTTCAAGACAATTCTTGAAAAACTTTACAACCCTCAAAAAGTTGGCACAAGAGCCAAGGAAAATGTGATGTGTGAATGCATTGTTGGAGGAAGGAACAAGGAGGAACAAATGATTGGCCTGGTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

189

Amino Acids

21.22

Weight (kDa)

8.6

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	7
AccII	CGCG	1 cut(s)	242
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	133
AfaI	GTAC	2 cut(s)	74, 263
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	6 cut(s)	51, 281, 358, 366, 442, 455
AjnI	CCWGG	1 cut(s)	555
AjuI	GAANNNNNNNTTGG	4 cut(s)	504, 534, 536, 566
AluBI	AGCT	3 cut(s)	34, 415, 419
AluI	AGCT	3 cut(s)	34, 415, 419
Alw26I	GTCTC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	3 cut(s)	3, 103, 553
ApeKI	GCWGC	3 cut(s)	34, 228, 419
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	242, 438
AspS9I	GGNCC	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	292
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbvI	GCAGC	3 cut(s)	21, 215, 406
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	235, 256
BfoI	RGCGCY	1 cut(s)	439
BisI	GCNGC	3 cut(s)	35, 229, 420
BlsI	GCNGC	3 cut(s)	36, 230, 421
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	557
BmtI	GCTAGC	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	120, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	120, 492
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	152
BseRI	GAGGAG	2 cut(s)	130, 425
BseXI	GCAGC	3 cut(s)	21, 215, 406
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	3 cut(s)	5, 105, 555
BsiHKCI	CYCGRG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
BsmI	GAATGC	2 cut(s)	24, 518
BsnI	GGCC	3 cut(s)	5, 105, 555
BsoBI	CYCGRG	1 cut(s)	7
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	3 cut(s)	5, 105, 555
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	150
BspOI	GCTAGC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	120, 492
BssNI	GRCGYC	1 cut(s)	133
BssT1I	CCWWGG	2 cut(s)	120, 492
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	39, 219, 417
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	242, 438
BstMAI	GTCTC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	2 cut(s)	235, 256
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	3 cut(s)	21, 215, 406
BsuRI	GGCC	3 cut(s)	5, 105, 555
Cac8I	GCNNGC	3 cut(s)	39, 219, 417
CfoI	GCGC	2 cut(s)	242, 438
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	73, 262
CviJI	RGCY	9 cut(s)	5, 34, 95, 105, 286, 415, 419, 491, 555
CviKI_1	RGCY	9 cut(s)	5, 34, 95, 105, 286, 415, 419, 491, 555
CviQI	GTAC	2 cut(s)	73, 262
EaeI	YGGCCR	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	120, 492
Eco47I	GGWCC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	120, 492
EcoT22I	ATGCAT	1 cut(s)	518
ErhI	CCWWGG	2 cut(s)	120, 492
Esp3I	CGTCTC	1 cut(s)	140
FaiI	YATR	4 cut(s)	116, 195, 237, 258
Fnu4HI	GCNGC	3 cut(s)	35, 229, 420
Fsp4HI	GCNGC	3 cut(s)	35, 229, 420
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	2 cut(s)	241, 437
GluI	GCNGC	3 cut(s)	35, 229, 420
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	5, 105, 555
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	242, 438
Hin1I	GRCGYC	1 cut(s)	133
Hin6I	GCGC	2 cut(s)	240, 436
HinP1I	GCGC	2 cut(s)	240, 436
HinfI	GANTC	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	292, 562
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	3 cut(s)	203, 442, 452
Hpy8I	GTNNAC	2 cut(s)	292, 562
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	91, 312, 522
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	157, 217, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	133
HspAI	GCGC	2 cut(s)	240, 436
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	5 cut(s)	27, 162, 272, 418, 542
Lsp1109I	GCAGC	3 cut(s)	21, 215, 406
MaeI	CTAG	1 cut(s)	416
MluCI	AATT	3 cut(s)	198, 296, 447
MmeI	TCCRAC	1 cut(s)	502
Mph1103I	ATGCAT	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	557
Mva1269I	GAATGC	2 cut(s)	24, 518
MvaI	CCWGG	1 cut(s)	557
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	237
NheI	GCTAGC	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	150
NmeAIII	GCCGAG	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	7
PctI	GAATGC	2 cut(s)	24, 518
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	36, 230, 421
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	292
PspXI	VCTCGAGB	1 cut(s)	7
RsaI	GTAC	2 cut(s)	74, 263
RsaNI	GTAC	2 cut(s)	73, 262
SatI	GCNGC	3 cut(s)	35, 229, 420
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	557
SetI	ASST	8 cut(s)	36, 62, 257, 263, 271, 408, 417, 421
SfcI	CTRYAG	2 cut(s)	235, 256
Sfr274I	CTCGAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	198, 296, 447
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	2 cut(s)	120, 492
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	8, 99, 202
TasI	AATT	3 cut(s)	198, 296, 447
TfiI	GAWTC	1 cut(s)	110
TseI	GCWGC	3 cut(s)	34, 228, 419
TspDTI	ATGAA	2 cut(s)	308, 371
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	7
XspI	CTAG	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.