Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

62355711 .. 62357186

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGTGATAACAAGGATTCATCTTATGATGTCACAATGAGAACGTTGAACATTTCAAGTCTGCCAATGTATCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTATATCAAACACTTCAAGACAGTTCTTGAAAAACTTTACAATGGAAATGCCTTAGAATCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCGCCAGGTTTGAGAATAAGGTGGGATACATTTCCAAGGGGGTAGTGGCCGGTGAATCAGTGATCAAAGAGCAGATTTTGGAGAGATTCTTCATCGATGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCAGCCGCCAGGTTTCATTCTTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGACAAAGGCGAGCTTGGATGGAACTGAACAAGATTTGGCGAAGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.63

Weight (kDa)

9.18

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	282, 417, 467
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	2 cut(s)	435, 448
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	49, 57, 133, 146
AjnI	CCWGG	3 cut(s)	223, 284, 419
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	3 cut(s)	106, 110, 506
AluI	AGCT	3 cut(s)	106, 110, 506
AlwI	GGATC	2 cut(s)	435, 448
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	221, 228
AsuHPI	GGTGA	4 cut(s)	125, 344, 401, 473
AsuNHI	GCTAGC	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	221, 228
BamHI	GGATCC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	1 cut(s)	505
BciT130I	CCWGG	3 cut(s)	225, 286, 421
BciVI	GTATCC	1 cut(s)	299
BclI	TGATCA	1 cut(s)	342
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	258
BfrI	CTTAAG	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	282, 414, 417
BlsI	GCNGC	3 cut(s)	283, 415, 418
Bme1390I	CCNGG	3 cut(s)	225, 286, 421
Bme18I	GGWCC	2 cut(s)	221, 228
BmgT120I	GGNCC	2 cut(s)	221, 228
BmiI	GGNNCC	3 cut(s)	229, 230, 442
BmrFI	CCNGG	3 cut(s)	225, 286, 421
BmsI	GCATC	1 cut(s)	205
BmtI	GCTAGC	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	224, 315
Bse118I	RCCGGY	1 cut(s)	329
BseBI	CCWGG	3 cut(s)	225, 286, 421
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	224, 315
BseGI	GGATG	2 cut(s)	220, 516
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	425
BshFI	GGCC	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	342, 399, 440
BspACI	CCGC	3 cut(s)	282, 417, 467
BspANI	GGCC	1 cut(s)	329
BspDI	ATCGAT	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	229, 230, 442
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	2 cut(s)	435, 448
BspTI	CTTAAG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	224, 315
BssMI	GATC	3 cut(s)	342, 399, 440
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	225, 286, 421
Bst4CI	ACNGT	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	108, 411, 504
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	220, 516
BstKTI	GATC	3 cut(s)	345, 402, 443
BstMBI	GATC	3 cut(s)	342, 399, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	3 cut(s)	225, 286, 421
BstSCI	CCNGG	3 cut(s)	223, 284, 419
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
Bsu15I	ATCGAT	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	220, 516
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	108, 411, 504
CaiI	CAGNNNCTG	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	221, 228
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	185
CviJI	RGCY	9 cut(s)	106, 110, 256, 281, 329, 386, 416, 458, 506
CviKI_1	RGCY	9 cut(s)	106, 110, 256, 281, 329, 386, 416, 458, 506
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	3 cut(s)	344, 401, 442
DpnII	GATC	3 cut(s)	342, 399, 440
EaeI	YGGCCR	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	221, 228
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	2 cut(s)	221, 228
EcoRII	CCWGG	3 cut(s)	223, 284, 419
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaiI	YATR	3 cut(s)	27, 120, 245
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	282, 414, 417
FokI	GGATG	2 cut(s)	227, 523
Fsp4HI	GCNGC	3 cut(s)	282, 414, 417
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	3 cut(s)	282, 414, 417
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	330
HinfI	GANTC	6 cut(s)	17, 173, 335, 366, 392, 489
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	4 cut(s)	125, 344, 401, 473
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	2 cut(s)	178, 494
Hpy188III	TCNNGA	2 cut(s)	133, 143
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	1 cut(s)	528
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	218, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	44
KflI	GGGWCCC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	342, 399, 440
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	344, 401, 442
MboI	GATC	3 cut(s)	342, 399, 440
MboII	GAAGA	6 cut(s)	209, 361, 464, 467, 470, 498
MflI	RGATCY	1 cut(s)	440
MluCI	AATT	1 cut(s)	237
MnlI	CCTC	2 cut(s)	94, 531
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	3 cut(s)	225, 286, 421
MvaI	CCWGG	3 cut(s)	225, 286, 421
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	3 cut(s)	342, 399, 440
NheI	GCTAGC	1 cut(s)	106
NlaIV	GGNNCC	3 cut(s)	229, 230, 442
NmuCI	GTSAC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	6 cut(s)	17, 173, 335, 366, 392, 489
PkrI	GCNGC	3 cut(s)	283, 415, 418
PpuMI	RGGWCCY	2 cut(s)	221, 228
Psp1406I	AACGTT	1 cut(s)	44
Psp5II	RGGWCCY	2 cut(s)	221, 228
Psp6I	CCWGG	3 cut(s)	223, 284, 419
PspGI	CCWGG	3 cut(s)	223, 284, 419
PspN4I	GGNNCC	3 cut(s)	229, 230, 442
PspPI	GGNCC	2 cut(s)	221, 228
PspPPI	RGGWCCY	2 cut(s)	221, 228
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	3 cut(s)	282, 414, 417
Sau3AI	GATC	3 cut(s)	342, 399, 440
Sau96I	GGNCC	2 cut(s)	221, 228
ScrFI	CCNGG	3 cut(s)	225, 286, 421
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	2 cut(s)	221, 228
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	3 cut(s)	282, 417, 467
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	223, 284, 419
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	375
TasI	AATT	1 cut(s)	237
TauI	GCSGC	2 cut(s)	284, 419
TfiI	GAWTC	6 cut(s)	17, 173, 335, 366, 392, 489
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	9, 361, 416
TspRI	CASTG	1 cut(s)	345
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	221, 228
XapI	RAATTY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	2 cut(s)	322, 451
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.