Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

70069910 .. 70072953

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG485100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTTCGAGGGTTTTGGTTGGCATTCGTAAGCTGCTTGTTGGAACCTCCCCCCAATCATCATGTTACAAACCCTCAATCCCAACCTCCCAATTCTCCACTTTAGCCGTCGATGGCCTCTCCTCAGTGGTTCCATTGCAACCCATTTCCGGACACTCAGGGGTTTTGACATTCGATAAAATTCGAGGCAATATTCGAGATACATCTTTGCAAGCAGTCTGCTGCTTCTATGGCACTAATGACTTCAGCTTTAAGTACATTCAAAGGCTGGTGGACAAATTCCCTCCTGTAAAAGCATTTCATTTTGTCCTTGACGACAATGATAAGGATTCATCTTATGATGTCACAATGAGAACGTTGAACATTTCAAGTCTGCCAATGTATCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTATATCAAACGCTTCAAGACAGTTCTTGAAAAACTTTACAACCCTCAAGAAGTTGGCACAAAAGCCAAGGAAAATGTGATGCATGAAGGCGTAGTTCGAAGACGGAACGAGGAGGAAAGAAAAAAGCCTATGATGAGCATTTATATGAATCAATTATTTCCAAGATCTAATTCCAGTTTTAAGTTATCTAGTGGGAATGCCTTAGAAGCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTAGATGCAGGACTTGGGACCCCCAGAATTTGCATGCAAGATGAGACTACAGGAGTGCCAAACCGAGCCATCAGGTTTAAGACTAAGGTGGGATACATTTCTAAGGGGGGAGTGGCCGGTGAATCAGTGATCAAAGAGCAGATGTTGGAGAGATTCTTCATCGATGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCAGCCGCCAGGTTTCAGTCTTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCATCTTCTTCTTCCACGAAGATTCAGGCAGAGGCGAGCTTGGATGGAACTGAACAAGATTTGGCGAAGGAATAGAAAGGTAAAGGGCTTTATTCTTCAGAAAGTCAAGGGAGGTTATTTAGTAGGCATCGGGGGTTTCATTACTTTTCTTCCAATCCGCCGAAAAATAGCGATATCGAATGGTCGATTCACCATTGAGAGCATTAACCGCAAAAGGCCTAATATTGTTGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

43.88

Weight (kDa)

9.98

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	4 cut(s)	876, 926, 1084, 1135
AclI	AACGTT	1 cut(s)	356
AclWI	GGATC	2 cut(s)	894, 907
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	3 cut(s)	180, 278, 699
AcuI	CTGAAG	3 cut(s)	229, 660, 1007
AfaI	GTAC	2 cut(s)	257, 648
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflII	CTTAAG	1 cut(s)	652
AgsI	TTSAA	5 cut(s)	263, 361, 369, 445, 458
AjnI	CCWGG	1 cut(s)	878
AjuI	GAANNNNNNNTTGG	2 cut(s)	583, 615
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	6 cut(s)	34, 249, 418, 422, 638, 965
AluI	AGCT	6 cut(s)	34, 249, 418, 422, 638, 965
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	2 cut(s)	894, 907
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	3 cut(s)	115, 786, 1142
ApeKI	GCWGC	3 cut(s)	34, 222, 872
ApoI	RAATTY	3 cut(s)	180, 278, 699
AspS9I	GGNCC	1 cut(s)	690
AsuHPI	GGTGA	5 cut(s)	437, 803, 860, 932, 1108
AsuII	TTCGAA	1 cut(s)	526
AsuNHI	GCTAGC	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	535
BbvI	GCAGC	3 cut(s)	21, 209, 884
BccI	CCATC	3 cut(s)	107, 749, 964
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	880
BciVI	GTATCC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	2 cut(s)	419, 618
BfmI	CTRYAG	1 cut(s)	720
BfrI	CTTAAG	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	758
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	4 cut(s)	35, 223, 873, 876
BlsI	GCNGC	4 cut(s)	36, 224, 874, 877
Bme1390I	CCNGG	1 cut(s)	880
Bme18I	GGWCC	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	5 cut(s)	46, 132, 691, 692, 901
BmrFI	CCNGG	1 cut(s)	880
BmsI	GCATC	4 cut(s)	498, 667, 937, 1062
BmtI	GCTAGC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	535
Bpu14I	TTCGAA	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	834
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	1 cut(s)	603
Bse3DI	GCAATG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	880
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	975
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	138, 171
BseNI	ACTGG	1 cut(s)	603
BseRI	GAGGAG	3 cut(s)	112, 428, 554
BseXI	GCAGC	3 cut(s)	21, 209, 884
BshFI	GGCC	3 cut(s)	117, 788, 1144
BshVI	ATCGAT	1 cut(s)	834
BsiSI	CCGG	2 cut(s)	150, 789
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	703
BsmI	GAATGC	2 cut(s)	24, 631
BsnI	GGCC	3 cut(s)	117, 788, 1144
Bsp119I	TTCGAA	1 cut(s)	526
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	593, 801, 858, 899
BspACI	CCGC	4 cut(s)	876, 926, 1084, 1135
BspANI	GGCC	3 cut(s)	117, 788, 1144
BspCNI	CTCAG	2 cut(s)	137, 170
BspDI	ATCGAT	1 cut(s)	834
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	5 cut(s)	46, 132, 691, 692, 901
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	894, 907
BspT104I	TTCGAA	1 cut(s)	526
BspTI	CTTAAG	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	4 cut(s)	593, 801, 858, 899
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	880
Bst4CI	ACNGT	1 cut(s)	451
BstAFI	CTTAAG	1 cut(s)	652
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	5 cut(s)	213, 420, 707, 870, 963
BstDEI	CTNAG	5 cut(s)	124, 157, 631, 756, 774
BstF5I	GGATG	1 cut(s)	975
BstKTI	GATC	4 cut(s)	596, 804, 861, 902
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	4 cut(s)	593, 801, 858, 899
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 635, 1134
BstNI	CCWGG	1 cut(s)	880
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	1 cut(s)	878
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	21, 209, 884
BstV2I	GAAGAC	1 cut(s)	535
BstX2I	RGATCY	2 cut(s)	593, 899
BstYI	RGATCY	2 cut(s)	593, 899
Bsu15I	ATCGAT	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	117, 788, 1144
BsuTUI	ATCGAT	1 cut(s)	834
BtsCI	GGATG	1 cut(s)	975
BtsIMutI	CAGTG	2 cut(s)	132, 804
Cac8I	GCNNGC	5 cut(s)	213, 420, 707, 870, 963
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	690
ClaI	ATCGAT	1 cut(s)	834
Csp6I	GTAC	2 cut(s)	256, 647
CviAII	CATG	3 cut(s)	63, 512, 706
CviQI	GTAC	2 cut(s)	256, 647
DdeI	CTNAG	5 cut(s)	124, 157, 631, 756, 774
DpnI	GATC	4 cut(s)	595, 803, 860, 901
DpnII	GATC	4 cut(s)	593, 801, 858, 899
EaeI	YGGCCR	1 cut(s)	786
EciI	GGCGGA	1 cut(s)	1073
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	1144
Eco32I	GATATC	1 cut(s)	1101
Eco47I	GGWCC	1 cut(s)	690
Eco57I	CTGAAG	3 cut(s)	229, 660, 1007
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRII	CCWGG	1 cut(s)	878
EcoRV	GATATC	1 cut(s)	1101
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	3 cut(s)	66, 515, 709
FaiI	YATR	9 cut(s)	64, 231, 339, 432, 513, 560, 573, 575, 707
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	3 cut(s)	62, 511, 705
FbaI	TGATCA	1 cut(s)	801
Fnu4HI	GCNGC	4 cut(s)	35, 223, 873, 876
FokI	GGATG	1 cut(s)	982
Fsp4HI	GCNGC	4 cut(s)	35, 223, 873, 876
FspBI	CTAG	2 cut(s)	419, 618
GluI	GCNGC	4 cut(s)	35, 223, 873, 876
HaeIII	GGCC	3 cut(s)	117, 788, 1144
HapII	CCGG	2 cut(s)	150, 789
Hin1II	CATG	3 cut(s)	66, 515, 709
HinfI	GANTC	7 cut(s)	329, 577, 794, 825, 851, 948, 1113
HpaII	CCGG	2 cut(s)	150, 789
HphI	GGTGA	5 cut(s)	437, 803, 860, 932, 1108
Hpy166II	GTNNAC	2 cut(s)	274, 923
Hpy188I	TCNGA	1 cut(s)	1026
Hpy188III	TCNNGA	5 cut(s)	150, 197, 445, 455, 476
Hpy8I	GTNNAC	2 cut(s)	274, 923
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	509, 987
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	6 cut(s)	139, 211, 511, 680, 705, 709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 635, 1134
HpyF3I	CTNAG	5 cut(s)	124, 157, 631, 756, 774
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	66, 515, 709
KflI	GGGWCCC	1 cut(s)	690
Kpn2I	TCCGGA	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	4 cut(s)	593, 801, 858, 899
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	21, 209, 884
LweI	GCATC	4 cut(s)	498, 667, 937, 1062
MaeI	CTAG	2 cut(s)	419, 618
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	65, 343
MalI	GATC	4 cut(s)	595, 803, 860, 901
MboI	GATC	4 cut(s)	593, 801, 858, 899
MboII	GAAGA	9 cut(s)	540, 671, 820, 923, 926, 929, 957, 1013, 1067
MflI	RGATCY	2 cut(s)	593, 899
MluCI	AATT	6 cut(s)	92, 180, 278, 581, 598, 699
MmeI	TCCRAC	2 cut(s)	22, 798
Mph1103I	ATGCAT	1 cut(s)	513
MroI	TCCGGA	1 cut(s)	149
MseI	TTAA	5 cut(s)	252, 609, 653, 750, 1131
MslI	CAYNNNNRTG	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	652
MspI	CCGG	2 cut(s)	150, 789
MspR9I	CCNGG	1 cut(s)	880
Mva1269I	GAATGC	2 cut(s)	24, 631
MvaI	CCWGG	1 cut(s)	880
MwoI	GCNNNNNNNGC	3 cut(s)	231, 635, 1134
NdeII	GATC	4 cut(s)	593, 801, 858, 899
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	3 cut(s)	66, 515, 709
NlaIV	GGNNCC	5 cut(s)	46, 132, 691, 692, 901
NmuCI	GTSAC	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	709
NspV	TTCGAA	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	709
PceI	AGGCCT	1 cut(s)	1144
PctI	GAATGC	2 cut(s)	24, 631
PfeI	GAWTC	7 cut(s)	329, 577, 794, 825, 851, 948, 1113
PkrI	GCNGC	4 cut(s)	36, 224, 874, 877
PpuMI	RGGWCCY	1 cut(s)	690
Psp1406I	AACGTT	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	690
Psp6I	CCWGG	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	878
PspN4I	GGNNCC	5 cut(s)	46, 132, 691, 692, 901
PspPI	GGNCC	1 cut(s)	690
PspPPI	RGGWCCY	1 cut(s)	690
PsuI	RGATCY	2 cut(s)	593, 899
RsaI	GTAC	2 cut(s)	257, 648
RsaNI	GTAC	2 cut(s)	256, 647
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	5 cut(s)	252, 609, 653, 750, 1131
SatI	GCNGC	4 cut(s)	35, 223, 873, 876
Sau3AI	GATC	4 cut(s)	593, 801, 858, 899
Sau96I	GGNCC	1 cut(s)	690
ScrFI	CCNGG	1 cut(s)	880
SfaNI	GCATC	4 cut(s)	498, 667, 937, 1062
SfcI	CTRYAG	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	526
SinI	GGWCC	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	2 cut(s)	474, 652
SmoI	CTYRAG	2 cut(s)	474, 652
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	6 cut(s)	92, 180, 278, 581, 598, 699
SseBI	AGGCCT	1 cut(s)	1144
SsiI	CCGC	4 cut(s)	876, 926, 1084, 1135
SspI	AATATT	2 cut(s)	193, 1150
SspMI	CTAG	2 cut(s)	419, 618
StuI	AGGCCT	1 cut(s)	1144
StyD4I	CCNGG	1 cut(s)	878
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	9 cut(s)	8, 111, 174, 184, 196, 526, 834, 1103, 1111
TasI	AATT	6 cut(s)	92, 180, 278, 581, 598, 699
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	7 cut(s)	329, 577, 794, 825, 851, 948, 1113
Tru1I	TTAA	5 cut(s)	252, 609, 653, 750, 1131
Tru9I	TTAA	5 cut(s)	252, 609, 653, 750, 1131
TscAI	CASTG	2 cut(s)	132, 804
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	3 cut(s)	34, 222, 872
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	6 cut(s)	290, 321, 528, 590, 820, 1054
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	2 cut(s)	132, 804
Vha464I	CTTAAG	1 cut(s)	652
VpaK11BI	GGWCC	1 cut(s)	690
XapI	RAATTY	3 cut(s)	180, 278, 699
XceI	RCATGY	1 cut(s)	709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	910
XspI	CTAG	2 cut(s)	419, 618
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.