Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8117328.1

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 563

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8117328.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 428 bp

atgagtcgatcatttccaagatctaattccagttttaagttatctagtggaaatgccttagaatctgaagttgtacgcttaagggaagataagttcttggtggatgcaggacctgggacccccagaatttgtatgcaagatgagcctacaggagtgccaatcaaccgagccgccaggtttgagaataaggtgggatacatttccaagggggtagtggccggtgaatcagtgatcaaagagcagattttggagagattcttcatcgatgtagtggctggtgaatcaaagatcaaagagcgagcagccgccaggtttcattctttggtgggatccacagatgtagtggctggtgaaccgcttcttcttcttccacgaagattcagacaaaggcgagcttggatggaactgaacaagatttggcgaaggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

10.25

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	171, 306, 356
AclWI	GGATC	2 cut(s)	324, 337
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	75
AflII	CTTAAG	1 cut(s)	79
AjnI	CCWGG	3 cut(s)	112, 173, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
AlwI	GGATC	2 cut(s)	324, 337
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	110, 117
AsuHPI	GGTGA	3 cut(s)	233, 290, 362
AvaII	GGWCC	2 cut(s)	110, 117
BamHI	GGATCC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	1 cut(s)	394
BciT130I	CCWGG	3 cut(s)	114, 175, 310
BciVI	GTATCC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	231
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	3 cut(s)	171, 303, 306
BlsI	GCNGC	3 cut(s)	172, 304, 307
Bme1390I	CCNGG	3 cut(s)	114, 175, 310
Bme18I	GGWCC	2 cut(s)	110, 117
BmgT120I	GGNCC	2 cut(s)	110, 117
BmiI	GGNNCC	3 cut(s)	118, 119, 331
BmrFI	CCNGG	3 cut(s)	114, 175, 310
BmsI	GCATC	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	113, 204
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	3 cut(s)	114, 175, 310
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	113, 204
BseGI	GGATG	2 cut(s)	109, 405
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	8, 20, 231, 288, 329
BspACI	CCGC	3 cut(s)	171, 306, 356
BspANI	GGCC	1 cut(s)	218
BspDI	ATCGAT	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	118, 119, 331
BspPI	GGATC	2 cut(s)	324, 337
BspTI	CTTAAG	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	113, 204
BssMI	GATC	5 cut(s)	8, 20, 231, 288, 329
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	114, 175, 310
BstAFI	CTTAAG	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	300, 393
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	109, 405
BstKTI	GATC	5 cut(s)	11, 23, 234, 291, 332
BstMBI	GATC	5 cut(s)	8, 20, 231, 288, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	3 cut(s)	114, 175, 310
BstSCI	CCNGG	3 cut(s)	112, 173, 308
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	20, 329
BstYI	RGATCY	2 cut(s)	20, 329
Bsu15I	ATCGAT	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	109, 405
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	300, 393
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	110, 117
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	74
CviJI	RGCY	7 cut(s)	145, 170, 218, 275, 305, 347, 395
CviKI_1	RGCY	7 cut(s)	145, 170, 218, 275, 305, 347, 395
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	5 cut(s)	10, 22, 233, 290, 331
DpnII	GATC	5 cut(s)	8, 20, 231, 288, 329
EaeI	YGGCCR	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	110, 117
Eco57I	CTGAAG	1 cut(s)	87
EcoO109I	RGGNCCY	2 cut(s)	110, 117
EcoRII	CCWGG	3 cut(s)	112, 173, 308
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaiI	YATR	1 cut(s)	134
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	171, 303, 306
FokI	GGATG	2 cut(s)	116, 412
Fsp4HI	GCNGC	3 cut(s)	171, 303, 306
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	3 cut(s)	171, 303, 306
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	219
HinfI	GANTC	6 cut(s)	4, 62, 224, 255, 281, 378
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	233, 290, 362
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	2 cut(s)	67, 383
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	417
HpyCH4V	TGCA	2 cut(s)	107, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	58
KflI	GGGWCCC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	8, 20, 231, 288, 329
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	45
MalI	GATC	5 cut(s)	10, 22, 233, 290, 331
MboI	GATC	5 cut(s)	8, 20, 231, 288, 329
MboII	GAAGA	6 cut(s)	98, 250, 353, 356, 359, 387
MflI	RGATCY	2 cut(s)	20, 329
MluCI	AATT	2 cut(s)	25, 126
MlyI	GAGTC	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	36, 80
MspCI	CTTAAG	1 cut(s)	79
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	3 cut(s)	114, 175, 310
MvaI	CCWGG	3 cut(s)	114, 175, 310
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	5 cut(s)	8, 20, 231, 288, 329
NlaIV	GGNNCC	3 cut(s)	118, 119, 331
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	5 cut(s)	62, 224, 255, 281, 378
PkrI	GCNGC	3 cut(s)	172, 304, 307
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	2 cut(s)	110, 117
Psp5II	RGGWCCY	2 cut(s)	110, 117
Psp6I	CCWGG	3 cut(s)	112, 173, 308
PspGI	CCWGG	3 cut(s)	112, 173, 308
PspN4I	GGNNCC	3 cut(s)	118, 119, 331
PspPI	GGNCC	2 cut(s)	110, 117
PspPPI	RGGWCCY	2 cut(s)	110, 117
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	20, 329
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	36, 80
SatI	GCNGC	3 cut(s)	171, 303, 306
Sau3AI	GATC	5 cut(s)	8, 20, 231, 288, 329
Sau96I	GGNCC	2 cut(s)	110, 117
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	114, 175, 310
SetI	ASST	5 cut(s)	115, 179, 192, 314, 397
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	2 cut(s)	110, 117
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	25, 126
SsiI	CCGC	3 cut(s)	171, 306, 356
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	112, 173, 308
StyI	CCWWGG	1 cut(s)	204
TaqI	TCGA	2 cut(s)	7, 264
TasI	AATT	2 cut(s)	25, 126
TauI	GCSGC	2 cut(s)	173, 308
TfiI	GAWTC	5 cut(s)	62, 224, 255, 281, 378
Tru1I	TTAA	2 cut(s)	36, 80
Tru9I	TTAA	2 cut(s)	36, 80
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	250, 305
TspRI	CASTG	1 cut(s)	234
Vha464I	CTTAAG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	110, 117
XapI	RAATTY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	2 cut(s)	211, 340
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.