Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Forward (+)

778287 .. 778895

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000381

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATGAGCATCTATATGAGTCGATCATTTCCAAGATCTAATTCCAGTTTTAAGTTATCTAGTGGAAATGCCTTAGAATCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCAAGCCGCCAGGTTTGAGAATAAGGTGGGATACATTTCCAAGGGGGTAGTGGCCGGTGAATCAGTGATCAAAGAGCAGATTTTGGAGAGATTCTTCATCGATGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCAGCCGCCAGGTTTCATTCTTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGACAAAGGCGAGCTTGGATGGAACTGAACAAGATTTGGCGAAGGAATAGAAAGAAAGTCAAAGGAGGTTTTTTAGTAGCCATCGGGGGTTTCATTACTTTTCTTCCATTCCGCCGAAAAAAAGGGATATCGAATGGTCGATTCACCATTGAGAGCATTAACCTCAAAAGGCCGAATATTGTGGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

22.05

Weight (kDa)

10.79

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	186, 321, 371, 508
AclWI	GGATC	2 cut(s)	339, 352
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	90
AflII	CTTAAG	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	127, 188, 323
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
AlwI	GGATC	2 cut(s)	339, 352
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	231, 566
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	125, 132
AsuHPI	GGTGA	4 cut(s)	248, 305, 377, 532
AvaII	GGWCC	2 cut(s)	125, 132
BamHI	GGATCC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	409, 485
BciT130I	CCWGG	3 cut(s)	129, 190, 325
BciVI	GTATCC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	246
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	3 cut(s)	186, 318, 321
BlsI	GCNGC	3 cut(s)	187, 319, 322
Bme1390I	CCNGG	3 cut(s)	129, 190, 325
Bme18I	GGWCC	2 cut(s)	125, 132
BmgT120I	GGNCC	2 cut(s)	125, 132
BmiI	GGNNCC	3 cut(s)	133, 134, 346
BmrFI	CCNGG	3 cut(s)	129, 190, 325
BmsI	GCATC	2 cut(s)	18, 109
Bsa29I	ATCGAT	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	128, 219
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	3 cut(s)	129, 190, 325
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	128, 219
BseGI	GGATG	2 cut(s)	124, 420
BseJI	GATNNNNATC	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	329
BshFI	GGCC	2 cut(s)	233, 568
BshVI	ATCGAT	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	233, 568
Bsp143I	GATC	5 cut(s)	23, 35, 246, 303, 344
BspACI	CCGC	4 cut(s)	186, 321, 371, 508
BspANI	GGCC	2 cut(s)	233, 568
BspDI	ATCGAT	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	133, 134, 346
BspPI	GGATC	2 cut(s)	339, 352
BspTI	CTTAAG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	128, 219
BssMI	GATC	5 cut(s)	23, 35, 246, 303, 344
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	3 cut(s)	129, 190, 325
BstAFI	CTTAAG	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	315, 408
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	124, 420
BstKTI	GATC	5 cut(s)	26, 38, 249, 306, 347
BstMBI	GATC	5 cut(s)	23, 35, 246, 303, 344
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	3 cut(s)	129, 190, 325
BstSCI	CCNGG	3 cut(s)	127, 188, 323
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	329
BstX2I	RGATCY	2 cut(s)	35, 344
BstYI	RGATCY	2 cut(s)	35, 344
Bsu15I	ATCGAT	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	233, 568
BsuTUI	ATCGAT	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	124, 420
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	315, 408
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	125, 132
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	89
CviJI	RGCY	9 cut(s)	160, 185, 233, 290, 320, 362, 410, 476, 568
CviKI_1	RGCY	9 cut(s)	160, 185, 233, 290, 320, 362, 410, 476, 568
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	5 cut(s)	25, 37, 248, 305, 346
DpnII	GATC	5 cut(s)	23, 35, 246, 303, 344
EaeI	YGGCCR	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	125, 132
Eco57I	CTGAAG	1 cut(s)	102
EcoO109I	RGGNCCY	2 cut(s)	125, 132
EcoRII	CCWGG	3 cut(s)	127, 188, 323
EcoRV	GATATC	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaiI	YATR	3 cut(s)	15, 17, 149
FalI	AAGNNNNNCTT	2 cut(s)	394, 426
FaqI	GGGAC	1 cut(s)	145
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	186, 318, 321
FokI	GGATG	2 cut(s)	131, 427
Fsp4HI	GCNGC	3 cut(s)	186, 318, 321
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	3 cut(s)	186, 318, 321
HaeIII	GGCC	2 cut(s)	233, 568
HapII	CCGG	1 cut(s)	234
HinfI	GANTC	7 cut(s)	19, 77, 239, 270, 296, 393, 537
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	4 cut(s)	248, 305, 377, 532
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	2 cut(s)	82, 398
Hpy8I	GTNNAC	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	432
HpyCH4V	TGCA	2 cut(s)	122, 151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	73
KflI	GGGWCCC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	5 cut(s)	23, 35, 246, 303, 344
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	2 cut(s)	18, 109
MaeI	CTAG	1 cut(s)	60
MalI	GATC	5 cut(s)	25, 37, 248, 305, 346
MboI	GATC	5 cut(s)	23, 35, 246, 303, 344
MboII	GAAGA	7 cut(s)	113, 265, 368, 371, 374, 402, 491
MflI	RGATCY	2 cut(s)	35, 344
MluCI	AATT	2 cut(s)	40, 141
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	2 cut(s)	455, 569
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	3 cut(s)	51, 95, 555
MslI	CAYNNNNRTG	1 cut(s)	14
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	3 cut(s)	129, 190, 325
MvaI	CCWGG	3 cut(s)	129, 190, 325
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	5 cut(s)	23, 35, 246, 303, 344
NlaIV	GGNNCC	3 cut(s)	133, 134, 346
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	6 cut(s)	77, 239, 270, 296, 393, 537
PkrI	GCNGC	3 cut(s)	187, 319, 322
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PpuMI	RGGWCCY	2 cut(s)	125, 132
Psp5II	RGGWCCY	2 cut(s)	125, 132
Psp6I	CCWGG	3 cut(s)	127, 188, 323
PspGI	CCWGG	3 cut(s)	127, 188, 323
PspN4I	GGNNCC	3 cut(s)	133, 134, 346
PspPI	GGNCC	2 cut(s)	125, 132
PspPPI	RGGWCCY	2 cut(s)	125, 132
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	35, 344
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	51, 95, 555
SatI	GCNGC	3 cut(s)	186, 318, 321
Sau3AI	GATC	5 cut(s)	23, 35, 246, 303, 344
Sau96I	GGNCC	2 cut(s)	125, 132
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	129, 190, 325
SetI	ASST	7 cut(s)	130, 194, 207, 329, 412, 466, 561
SfaNI	GCATC	2 cut(s)	18, 109
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	125, 132
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	2 cut(s)	40, 141
SsiI	CCGC	4 cut(s)	186, 321, 371, 508
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	127, 188, 323
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	4 cut(s)	22, 279, 527, 535
TasI	AATT	2 cut(s)	40, 141
TauI	GCSGC	2 cut(s)	188, 323
TfiI	GAWTC	6 cut(s)	77, 239, 270, 296, 393, 537
Tru1I	TTAA	3 cut(s)	51, 95, 555
Tru9I	TTAA	3 cut(s)	51, 95, 555
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	3 cut(s)	265, 320, 478
TspRI	CASTG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	125, 132
XapI	RAATTY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 355
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.