Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Forward (+)

24553212 .. 24556032

Gene Structure 2821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0257700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGAACTCCGGAATTCCCAGATCTGGGTAAGCATTGCTCCGTCGTCGAATGCCAGCAGATCGATTTCTTGCCATTCACCTGCGATAGCTGCAACAAGGTGTTTTGTTTGGAGCACCGAAGCTACATTAAACACAACTGTCCAAAAGGCGACAGACAAAATGTCACTGTTGTCATTTGCCCCCTCTGTGCCAAAGGAGTTCATCTAATTCCGGATGAAGATCCCAACATTACTTGGGAGAGGCATGTTAACACTGATTGTGACCCTTCGAATTATGAGAAAGCCACAAAGAAGAAAAAATGTCCTGTCCCTGGATGCAGGGAGGTCTTAACATTCTCGAACACAATCAAGTGCAGGGACTGCATGGCAGACCACTGTTTGAAGCACCGATTTGGACCTGATCATAAGTGTCCTGGACCTAAGAAACCGGAGTCAGGTTTATCCTTTATGGGTCTTTTAAGTAGAAGTCGAAAAGAAACATCAAATCGCAACCATGCTCCTGCCACATCTTCCCCCAATTGGGGTAGCTTTCTTAGTGCAGCTTCATCTTTCAAAGCCTCAGCTGAAGCTAGTGTTGCAAAATTGAGTAATGAACTTAGCCAAAAGTGGACAACAAAAGATGGAGTGGGACAGAGCAGCAGCAGTGGGAGTAGAAACGGGCAAGTGGAGGAGTGTCCGCAATGTGGTGCTAAGTTCTCCTCAGTCACCACTCTTGTAGATCATGTACAAAAAGTTCATGAAAAGGGTGGCACCCGAGCAGGGGTGAAGAAGTTGACAGTAGATGTCTGCCCCAAGTGTAGTAAAGGATTTCGGGATCCAGTGGCTCTTGTAGAGCATGTTGAGAGGGATCATGGTGGTACTTCAAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

290

Amino Acids

31.76

Weight (kDa)

8.72

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	13 - 49	1.8e-14	AN1-like Zinc finger
zf-C2H2_ZFAND2	PF25403	56 - 94	6.2e-19	ZFAND2A/B-like C2H2 zinc finger
zf-AN1	PF01428	101 - 142	1.5e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	749
AccIII	TCCGGA	2 cut(s)	10, 211
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	4 cut(s)	215, 809, 822, 855
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	2 cut(s)	726, 859
AgsI	TTSAA	3 cut(s)	382, 553, 864
AhdI	GACNNNNNGTC	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	310, 412
AluBI	AGCT	6 cut(s)	90, 123, 528, 542, 563, 569
AluI	AGCT	6 cut(s)	90, 123, 528, 542, 563, 569
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	4 cut(s)	215, 809, 822, 855
AlwNI	CAGNNNCTG	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	753
Aor13HI	TCCGGA	2 cut(s)	10, 211
ApeKI	GCWGC	4 cut(s)	90, 539, 636, 639
ApoI	RAATTY	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	395, 416
AsuHPI	GGTGA	3 cut(s)	70, 697, 775
AsuII	TTCGAA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	2 cut(s)	395, 416
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	749
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	559
BbvI	GCAGC	4 cut(s)	77, 551, 648, 651
BccI	CCATC	1 cut(s)	614
BciT130I	CCWGG	2 cut(s)	312, 414
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	4 cut(s)	91, 540, 637, 640
BlsI	GCNGC	4 cut(s)	92, 541, 638, 641
Bme1390I	CCNGG	2 cut(s)	312, 414
Bme18I	GGWCC	2 cut(s)	395, 416
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	2 cut(s)	395, 416
BmiI	GGNNCC	2 cut(s)	751, 816
BmrFI	CCNGG	2 cut(s)	312, 414
BmsI	GCATC	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	559
Bpu14I	TTCGAA	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	3 cut(s)	10, 211, 427
Bse1I	ACTGG	1 cut(s)	818
Bse3DI	GCAATG	2 cut(s)	34, 686
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	2 cut(s)	10, 211
BseBI	CCWGG	2 cut(s)	312, 414
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	220, 320
BseJI	GATNNNNATC	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	34, 686
BseMII	CTCAG	2 cut(s)	573, 714
BseNI	ACTGG	1 cut(s)	818
BseRI	GAGGAG	2 cut(s)	683, 688
BseXI	GCAGC	4 cut(s)	77, 551, 648, 651
BsgI	GTGCAG	2 cut(s)	373, 558
BshNI	GGYRCC	1 cut(s)	749
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	3 cut(s)	11, 212, 428
BslFI	GGGAC	3 cut(s)	293, 371, 642
BsmFI	GGGAC	3 cut(s)	293, 371, 642
BsmI	GAATGC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	753
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	2 cut(s)	10, 211
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	7 cut(s)	22, 60, 220, 400, 718, 814, 847
BspACI	CCGC	1 cut(s)	677
BspCNI	CTCAG	2 cut(s)	572, 713
BspDI	ATCGAT	1 cut(s)	63
BspEI	TCCGGA	2 cut(s)	10, 211
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	751, 816
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	4 cut(s)	215, 809, 822, 855
BspT104I	TTCGAA	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	749
BsrDI	GCAATG	2 cut(s)	34, 686
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	818
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	7 cut(s)	22, 60, 220, 400, 718, 814, 847
Bst2UI	CCWGG	2 cut(s)	312, 414
Bst4CI	ACNGT	4 cut(s)	140, 169, 377, 778
BstAPI	GCANNNNNTGC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	724
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	6 cut(s)	420, 533, 559, 596, 690, 700
BstF5I	GGATG	2 cut(s)	220, 320
BstKTI	GATC	7 cut(s)	25, 63, 223, 403, 721, 817, 850
BstMBI	GATC	7 cut(s)	22, 60, 220, 400, 718, 814, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 360, 575
BstNI	CCWGG	2 cut(s)	312, 414
BstNSI	RCATGY	2 cut(s)	248, 839
BstSCI	CCNGG	2 cut(s)	310, 412
BstV1I	GCAGC	4 cut(s)	77, 551, 648, 651
BstX2I	RGATCY	3 cut(s)	22, 220, 814
BstYI	RGATCY	3 cut(s)	22, 220, 814
Bsu15I	ATCGAT	1 cut(s)	63
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	220, 320
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	5 cut(s)	165, 252, 373, 649, 825
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	360
CciI	TCATGA	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	395, 416
ClaI	ATCGAT	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	725, 858
CviAII	CATG	7 cut(s)	245, 364, 494, 722, 737, 836, 851
CviQI	GTAC	2 cut(s)	725, 858
DdeI	CTNAG	6 cut(s)	420, 533, 559, 596, 690, 700
DpnI	GATC	7 cut(s)	24, 62, 222, 402, 720, 816, 849
DpnII	GATC	7 cut(s)	22, 60, 220, 400, 718, 814, 847
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	395, 416
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	753
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	310, 412
FaeI	CATG	7 cut(s)	248, 367, 497, 725, 740, 839, 854
FaqI	GGGAC	3 cut(s)	293, 371, 642
FatI	CATG	7 cut(s)	244, 363, 493, 721, 736, 835, 850
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	91, 540, 637, 640
FokI	GGATG	2 cut(s)	227, 327
Fsp4HI	GCNGC	4 cut(s)	91, 540, 637, 640
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	4 cut(s)	91, 540, 637, 640
HapII	CCGG	3 cut(s)	11, 212, 428
Hin1II	CATG	7 cut(s)	248, 367, 497, 725, 740, 839, 854
HincII	GTYRAC	2 cut(s)	250, 774
HindII	GTYRAC	2 cut(s)	250, 774
HinfI	GANTC	1 cut(s)	431
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	3 cut(s)	11, 212, 428
HphI	GGTGA	3 cut(s)	70, 697, 775
Hpy166II	GTNNAC	3 cut(s)	250, 609, 774
Hpy188III	TCNNGA	6 cut(s)	11, 212, 337, 737, 812, 864
Hpy8I	GTNNAC	3 cut(s)	250, 609, 774
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	4 cut(s)	140, 169, 377, 778
HpyCH4V	TGCA	6 cut(s)	93, 318, 354, 363, 539, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 360, 575
HpyF3I	CTNAG	6 cut(s)	420, 533, 559, 596, 690, 700
Hsp92II	CATG	7 cut(s)	248, 367, 497, 725, 740, 839, 854
Kpn2I	TCCGGA	2 cut(s)	10, 211
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	7 cut(s)	22, 60, 220, 400, 718, 814, 847
LmnI	GCTCC	3 cut(s)	44, 112, 502
Lsp1109I	GCAGC	4 cut(s)	77, 551, 648, 651
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	3 cut(s)	163, 260, 703
MalI	GATC	7 cut(s)	24, 62, 222, 402, 720, 816, 849
MboI	GATC	7 cut(s)	22, 60, 220, 400, 718, 814, 847
MboII	GAAGA	4 cut(s)	230, 304, 501, 778
MfeI	CAATTG	1 cut(s)	517
MflI	RGATCY	3 cut(s)	22, 220, 814
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	5 cut(s)	14, 207, 271, 517, 581
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	7 cut(s)	194, 234, 316, 568, 661, 709, 837
MroI	TCCGGA	2 cut(s)	10, 211
MseI	TTAA	4 cut(s)	129, 249, 329, 458
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	3 cut(s)	11, 212, 428
MspR9I	CCNGG	2 cut(s)	312, 414
MunI	CAATTG	1 cut(s)	517
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	312, 414
MwoI	GCNNNNNNNGC	3 cut(s)	90, 360, 575
NdeII	GATC	7 cut(s)	22, 60, 220, 400, 718, 814, 847
NlaIII	CATG	7 cut(s)	248, 367, 497, 725, 740, 839, 854
NlaIV	GGNNCC	2 cut(s)	751, 816
NmuCI	GTSAC	3 cut(s)	163, 260, 703
NspI	RCATGY	2 cut(s)	248, 839
NspV	TTCGAA	1 cut(s)	269
PagI	TCATGA	1 cut(s)	736
PaqCI	CACCTGC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	4 cut(s)	92, 541, 638, 641
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	310, 412
PspGI	CCWGG	2 cut(s)	310, 412
PspN4I	GGNNCC	2 cut(s)	751, 816
PspPI	GGNCC	2 cut(s)	395, 416
PsrI	GAACNNNNNNTAC	2 cut(s)	717, 749
PstNI	CAGNNNCTG	1 cut(s)	360
PsuI	RGATCY	3 cut(s)	22, 220, 814
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	726, 859
RsaNI	GTAC	2 cut(s)	725, 858
SaqAI	TTAA	4 cut(s)	129, 249, 329, 458
SatI	GCNGC	4 cut(s)	91, 540, 637, 640
Sau3AI	GATC	7 cut(s)	22, 60, 220, 400, 718, 814, 847
Sau96I	GGNCC	2 cut(s)	395, 416
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	312, 414
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	269
SinI	GGWCC	2 cut(s)	395, 416
Sse9I	AATT	5 cut(s)	14, 207, 271, 517, 581
SsiI	CCGC	1 cut(s)	677
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	2 cut(s)	310, 412
TaaI	ACNGT	4 cut(s)	140, 169, 377, 778
TaqI	TCGA	5 cut(s)	48, 63, 269, 338, 469
TasI	AATT	5 cut(s)	14, 207, 271, 517, 581
TatI	WGTACW	1 cut(s)	724
Tru1I	TTAA	4 cut(s)	129, 249, 329, 458
Tru9I	TTAA	4 cut(s)	129, 249, 329, 458
TscAI	CASTG	5 cut(s)	172, 259, 380, 649, 825
TseFI	GTSAC	3 cut(s)	163, 260, 703
TseI	GCWGC	4 cut(s)	90, 539, 636, 639
Tsp45I	GTSAC	3 cut(s)	163, 260, 703
TspDTI	ATGAA	6 cut(s)	191, 231, 534, 606, 725, 753
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	5 cut(s)	172, 259, 380, 649, 825
VpaK11BI	GGWCC	2 cut(s)	395, 416
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	2 cut(s)	248, 839
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.