Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

686658 .. 688518

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATGAGCATCTATATGAGTCGATCATTTCCAAGATCTAATTCCAGTTTTAAGTTATCTAGTGGAAATGCCTTAGAATCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCAAGCCGCCAGGTTTGAGAATAAGGTGGGATACATTTCCAAGGGGGTAGTGGCCGGTGAATCAGTGATCAAAGAGCAGATTTTGGAGAGATTCTTCATCGATGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCAGCCGCCAGGTTTCATTCTTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGACAAAGGCGAGCTTGGATGGAACTGAACAAGATTTGGCGAAGGAATAGAAAGTACCCGCCTCTTGGTGTCCAATACCCAGTGATGGGAGAAGGAGTGGGAGACGAAGAGAGGGAAGATGGTTGCTTAGCAGCGGAAGCTGGGGATCGAGAAGCGGGGGGAGCGCTTAGGCTTGAAATGGAGCTAGGATACCGGTATTTTTACCTCCCTGGATCCGAGTCTTTCTCTTCCCCTGGACCGAGCACCGAGACCGAGAAAAGAGAGGCTGGATACGAGTCTGATGAGATCAGAGCCAGTGAAGAGAAGAGGGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.52

Weight (kDa)

5.57

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	186, 321, 371, 455, 530, 551
AclWI	GGATC	5 cut(s)	339, 352, 549, 603, 616
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	90, 452
AfeI	AGCGCT	1 cut(s)	561
AfiI	CCNNNNNNNGG	3 cut(s)	461, 481, 482
AflII	CTTAAG	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	588
AgsI	TTSAA	1 cut(s)	572
AjnI	CCWGG	5 cut(s)	127, 188, 323, 604, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	410, 536, 580
AluI	AGCT	3 cut(s)	410, 536, 580
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	2 cut(s)	492, 638
AlwI	GGATC	5 cut(s)	339, 352, 549, 603, 616
AlwNI	CAGNNNCTG	1 cut(s)	128
Aor51HI	AGCGCT	1 cut(s)	561
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	2 cut(s)	317, 527
ApoI	RAATTY	1 cut(s)	141
AsiGI	ACCGGT	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	3 cut(s)	125, 132, 632
AsuHPI	GGTGA	3 cut(s)	248, 305, 377
AvaII	GGWCC	3 cut(s)	125, 132, 632
BamHI	GGATCC	2 cut(s)	344, 608
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	329, 539
BccI	CCATC	3 cut(s)	409, 475, 509
BciT130I	CCWGG	5 cut(s)	129, 190, 325, 606, 630
BciVI	GTATCC	3 cut(s)	203, 578, 659
BclI	TGATCA	1 cut(s)	246
BcoDI	GTCTC	2 cut(s)	492, 638
BfaI	CTAG	2 cut(s)	60, 581
BfmI	CTRYAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	563
BfrI	CTTAAG	1 cut(s)	94
BfuI	GTATCC	3 cut(s)	203, 578, 659
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	4 cut(s)	186, 318, 321, 528
BlpI	GCTNAGC	1 cut(s)	523
BlsI	GCNGC	4 cut(s)	187, 319, 322, 529
Bme1390I	CCNGG	5 cut(s)	129, 190, 325, 606, 630
Bme18I	GGWCC	3 cut(s)	125, 132, 632
BmgT120I	GGNCC	3 cut(s)	125, 132, 632
BmiI	GGNNCC	4 cut(s)	133, 134, 346, 610
BmrFI	CCNGG	5 cut(s)	129, 190, 325, 606, 630
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	18, 109
BmuI	ACTGGG	1 cut(s)	470
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
Bpu10I	CCTNAGC	1 cut(s)	563
Bpu1102I	GCTNAGC	1 cut(s)	523
Bsa29I	ATCGAT	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	4 cut(s)	128, 219, 604, 628
BsaWI	WCCGGW	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	461, 481, 482
Bse118I	RCCGGY	2 cut(s)	233, 588
Bse1I	ACTGG	3 cut(s)	45, 476, 690
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	5 cut(s)	129, 190, 325, 606, 630
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	128, 219, 604, 628
BseGI	GGATG	2 cut(s)	124, 420
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	461, 481, 482
BseNI	ACTGG	3 cut(s)	45, 476, 690
BseXI	GCAGC	2 cut(s)	329, 539
BseYI	CCCAGC	1 cut(s)	536
BshFI	GGCC	1 cut(s)	233
BshTI	ACCGGT	1 cut(s)	588
BshVI	ATCGAT	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	234, 589
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	3 cut(s)	461, 481, 482
BsmAI	GTCTC	2 cut(s)	492, 638
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	8 cut(s)	23, 35, 246, 303, 344, 541, 608, 681
Bsp1720I	GCTNAGC	1 cut(s)	523
BspACI	CCGC	6 cut(s)	186, 321, 371, 455, 530, 551
BspANI	GGCC	1 cut(s)	233
BspDI	ATCGAT	1 cut(s)	279
BspLI	GGNNCC	4 cut(s)	133, 134, 346, 610
BspPI	GGATC	5 cut(s)	339, 352, 549, 603, 616
BspTI	CTTAAG	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	638
BsrFI	RCCGGY	2 cut(s)	233, 588
BsrI	ACTGG	3 cut(s)	45, 476, 690
BssAI	RCCGGY	2 cut(s)	233, 588
BssECI	CCNNGG	4 cut(s)	128, 219, 604, 628
BssMI	GATC	8 cut(s)	23, 35, 246, 303, 344, 541, 608, 681
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	5 cut(s)	129, 190, 325, 606, 630
Bst6I	CTCTTC	4 cut(s)	498, 628, 690, 695
BstAFI	CTTAAG	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	315, 408
BstDEI	CTNAG	3 cut(s)	73, 523, 563
BstF5I	GGATG	2 cut(s)	124, 420
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	8 cut(s)	26, 38, 249, 306, 347, 544, 611, 684
BstMAI	GTCTC	2 cut(s)	492, 638
BstMBI	GATC	8 cut(s)	23, 35, 246, 303, 344, 541, 608, 681
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 533, 557
BstNI	CCWGG	5 cut(s)	129, 190, 325, 606, 630
BstSCI	CCNGG	5 cut(s)	127, 188, 323, 604, 628
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	329, 539
BstX2I	RGATCY	3 cut(s)	35, 344, 608
BstYI	RGATCY	3 cut(s)	35, 344, 608
Bsu15I	ATCGAT	1 cut(s)	279
BsuI	GTATCC	3 cut(s)	203, 578, 659
BsuRI	GGCC	1 cut(s)	233
BsuTUI	ATCGAT	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	124, 420
BtsIMutI	CAGTG	3 cut(s)	249, 483, 697
Cac8I	GCNNGC	2 cut(s)	315, 408
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	2 cut(s)	233, 588
Cfr13I	GGNCC	3 cut(s)	125, 132, 632
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	89, 451
CspAI	ACCGGT	1 cut(s)	588
CviQI	GTAC	2 cut(s)	89, 451
DdeI	CTNAG	3 cut(s)	73, 523, 563
DpnI	GATC	8 cut(s)	25, 37, 248, 305, 346, 543, 610, 683
DpnII	GATC	8 cut(s)	23, 35, 246, 303, 344, 541, 608, 681
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	4 cut(s)	498, 628, 690, 695
EarI	CTCTTC	4 cut(s)	498, 628, 690, 695
Eco130I	CCWWGG	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	638
Eco47I	GGWCC	3 cut(s)	125, 132, 632
Eco47III	AGCGCT	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	102
EcoO109I	RGGNCCY	2 cut(s)	125, 132
EcoRII	CCWGG	5 cut(s)	127, 188, 323, 604, 628
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	492
FaiI	YATR	3 cut(s)	15, 17, 149
FalI	AAGNNNNNCTT	2 cut(s)	394, 426
FaqI	GGGAC	1 cut(s)	145
FauI	CCCGC	2 cut(s)	462, 544
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	186, 318, 321, 528
FokI	GGATG	2 cut(s)	131, 427
Fsp4HI	GCNGC	4 cut(s)	186, 318, 321, 528
FspBI	CTAG	2 cut(s)	60, 581
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	4 cut(s)	186, 318, 321, 528
GsaI	CCCAGC	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	2 cut(s)	234, 589
HhaI	GCGC	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HinfI	GANTC	8 cut(s)	19, 77, 239, 270, 296, 393, 614, 671
HpaII	CCGG	2 cut(s)	234, 589
HphI	GGTGA	3 cut(s)	248, 305, 377
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	5 cut(s)	82, 398, 613, 676, 686
Hpy188III	TCNNGA	1 cut(s)	545
Hpy8I	GTNNAC	1 cut(s)	368
HpyAV	CCTTC	3 cut(s)	432, 482, 701
HpyCH4V	TGCA	2 cut(s)	122, 151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 533, 557
HpyF3I	CTNAG	3 cut(s)	73, 523, 563
HspAI	GCGC	1 cut(s)	560
KflI	GGGWCCC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	8 cut(s)	23, 35, 246, 303, 344, 541, 608, 681
LmnI	GCTCC	2 cut(s)	557, 577
Lsp1109I	GCAGC	2 cut(s)	329, 539
LweI	GCATC	2 cut(s)	18, 109
MaeI	CTAG	2 cut(s)	60, 581
MalI	GATC	8 cut(s)	25, 37, 248, 305, 346, 543, 610, 683
MboI	GATC	8 cut(s)	23, 35, 246, 303, 344, 541, 608, 681
MflI	RGATCY	3 cut(s)	35, 344, 608
MhlI	GDGCHC	1 cut(s)	641
MluCI	AATT	2 cut(s)	40, 141
MlyI	GAGTC	3 cut(s)	28, 623, 680
MnlI	CCTC	5 cut(s)	468, 501, 611, 652, 696
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	51, 95
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	2 cut(s)	234, 589
MspR9I	CCNGG	5 cut(s)	129, 190, 325, 606, 630
MvaI	CCWGG	5 cut(s)	129, 190, 325, 606, 630
MwoI	GCNNNNNNNGC	3 cut(s)	157, 533, 557
NdeII	GATC	8 cut(s)	23, 35, 246, 303, 344, 541, 608, 681
NlaIV	GGNNCC	4 cut(s)	133, 134, 346, 610
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	5 cut(s)	77, 239, 270, 296, 393
PinAI	ACCGGT	1 cut(s)	588
PkrI	GCNGC	4 cut(s)	187, 319, 322, 529
PleI	GAGTC	3 cut(s)	27, 622, 679
PpsI	GAGTC	3 cut(s)	27, 622, 679
PpuMI	RGGWCCY	2 cut(s)	125, 132
Psp5II	RGGWCCY	2 cut(s)	125, 132
Psp6I	CCWGG	5 cut(s)	127, 188, 323, 604, 628
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	5 cut(s)	127, 188, 323, 604, 628
PspN4I	GGNNCC	4 cut(s)	133, 134, 346, 610
PspPI	GGNCC	3 cut(s)	125, 132, 632
PspPPI	RGGWCCY	2 cut(s)	125, 132
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	3 cut(s)	35, 344, 608
RsaI	GTAC	2 cut(s)	90, 452
RsaNI	GTAC	2 cut(s)	89, 451
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	51, 95
SatI	GCNGC	4 cut(s)	186, 318, 321, 528
Sau3AI	GATC	8 cut(s)	23, 35, 246, 303, 344, 541, 608, 681
Sau96I	GGNCC	3 cut(s)	125, 132, 632
SchI	GAGTC	3 cut(s)	28, 623, 680
ScrFI	CCNGG	5 cut(s)	129, 190, 325, 606, 630
SduI	GDGCHC	1 cut(s)	641
SetI	ASST	8 cut(s)	130, 194, 207, 329, 412, 538, 582, 603
SfaNI	GCATC	2 cut(s)	18, 109
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	3 cut(s)	125, 132, 632
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	2 cut(s)	40, 141
SsiI	CCGC	6 cut(s)	186, 321, 371, 455, 530, 551
SspMI	CTAG	2 cut(s)	60, 581
StyD4I	CCNGG	5 cut(s)	127, 188, 323, 604, 628
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	3 cut(s)	22, 279, 544
TaqII	GACCGA	2 cut(s)	649, 662
TasI	AATT	2 cut(s)	40, 141
TauI	GCSGC	2 cut(s)	188, 323
TfiI	GAWTC	5 cut(s)	77, 239, 270, 296, 393
Tru1I	TTAA	2 cut(s)	51, 95
Tru9I	TTAA	2 cut(s)	51, 95
TscAI	CASTG	3 cut(s)	249, 483, 697
TseI	GCWGC	2 cut(s)	317, 527
TspDTI	ATGAA	2 cut(s)	265, 320
TspRI	CASTG	3 cut(s)	249, 483, 697
Vha464I	CTTAAG	1 cut(s)	94
VpaK11BI	GGWCC	3 cut(s)	125, 132, 632
XapI	RAATTY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 355
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	2 cut(s)	60, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.