Rorug02G0404600

RIBOSOMAL protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
51667729 .. 51685697
17969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0404600.1

Sequence Viewer

Length: 1365 bp
ATGTCCGTTTGCCGAGTCTCTACTTTGGGAGAGGTGGGCAAAGCGAAACACAAAGGGTACCAATCCGAACCCCAAATGGACTCCATTGATGTGCTCATGCTAGTCCTAAAATCGATAAGCGCTTCACCGTCCTCAAGCTCTGGACTGTCCCTAACAAAACCCAGTTCATCAAGGACAACTCCAGTTCCATCCGAGCCATCGTCGGCCACGACGGCACTGGAGCTGAGGAATAGACGGAAATTCTACCTAAGCAAAAGGTTCATAAACATTGTTCTGGATTGCATGATTACGCTACTGGCTTGTGTATTTTCTATTGTATTATGCATTCACCGGAAGCAAAGAATTCTTCTTATGTCTGATCTACCAAGAGAGCAGATGCGCAAGAAGGCTGACGATATTGCCAAAGATTTGAACCATATTGATACCCTTACAAAAAGCTTCTCATCAGGATTTCGGGTTGGAAACCGAAGCCTCAATCAAGCAAGGCTCTTTGGCAATTTGATTCAGGCTGTCTTCTCCTTGGATTCCACTACTTTGCTTTGTATATTGTCCTTATTTTGTAGAGCTGATGCTAAAGTGAAGGAGTTGCGACATTCAATTGATCTTCTAAAGACTGAAAGCCAACAATTAGAGATGACCTCTGAGATGAAAAGCGTTATTACCACCCCGCCAAACACACACCGAATGTTTGGTATTTTGTACGGCGAGCTCTTCCTCTTGATCGGAGCCACCGCTGCTTTAGTCGGACCAAAAGATTTGCCTAGGATTGCAAGAATGGCGGGGCGGTTAGCAGGTCGGTCAATCGGGTATGTCCAGTTAGCTCGAGGCCAATTCGACAATGTAATGCAGCAATCTCAAGCTCGCCAGGTTCAAAAGGAACTTCAAGATGCGCTTGCACAGTTGGATTTGATTCGTTATGAAGTACGAAGTCTGTCGCTTATAAACTCGGGTCCCATGACTCGAAAGCTGATGGAAAATGCTGGGGAACTTGCCTCTCCACATAATGGTAGTGTTCTTAGTAGTCGTAGTTGTAGCAAGCTGAGTAATGTTTTGCTTCTCTCATGGTTACAAGTTCATATGATAATATTAACTTCAGAACCTCAGAATCACTTAATTTGCATACACAAGCCACTGCATATTAGATTGGCTGAATCTGCTGCTGTGAACACTAGCTTCTTGAAAAGTAGTGAAGAGAAAGAGAGACTTATTGATGAAAATGGTCTTTTCACTGTTCTTCCAATTTCAGCTGAAAGCACCGGAATGGTACCAAAACGCAAGGAAAACGTTGAAGGATCAGACATTGTGTTGGAAGCAGTGCTTGAAGCAGAGCTACTGGGATCAATGAGAATTGCTATCAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

50.23

Weight (kDa)

9.45

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 941
Acc16I TGCGCA 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 782
Acc65I GGTACC 2 cut(s) 57, 1264
AccB1I GGYRCC 2 cut(s) 57, 1264
AccB7I CCANNNNNTGG 1 cut(s) 1004
AciI CCGC 4 cut(s) 668, 732, 779, 784
AclI AACGTT 1 cut(s) 1284
AclWI GGATC 2 cut(s) 1300, 1345
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 2 cut(s) 239, 342
AcuI CTGAAG 1 cut(s) 1077
AfaI GTAC 4 cut(s) 59, 701, 924, 1266
AfeI AGCGCT 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 1004
AgsI TTSAA 7 cut(s) 412, 597, 872, 884, 1180, 1289, 1322
AjnI CCWGG 1 cut(s) 864
Alw21I GWGCWC 2 cut(s) 96, 711
Alw26I GTCTC 2 cut(s) 22, 1195
AlwI GGATC 2 cut(s) 1300, 1345
Ama87I CYCGRG 2 cut(s) 822, 946
Aor51HI AGCGCT 1 cut(s) 121
AoxI GGCC 2 cut(s) 204, 826
ApeKI GCWGC 3 cut(s) 734, 847, 1157
ApoI RAATTY 2 cut(s) 239, 342
Asp718I GGTACC 2 cut(s) 57, 1264
AspA2I CCTAGG 1 cut(s) 761
AspLEI GCGC 3 cut(s) 122, 381, 892
AspS9I GGNCC 2 cut(s) 746, 950
AsuHPI GGTGA 2 cut(s) 117, 320
AvaI CYCGRG 2 cut(s) 822, 946
AvaII GGWCC 2 cut(s) 746, 950
AvrII CCTAGG 1 cut(s) 761
BanI GGYRCC 2 cut(s) 57, 1264
BanII GRGCYC 1 cut(s) 711
BarI GAAGNNNNNNTAC 2 cut(s) 1314, 1346
BbsI GAAGAC 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 96, 711
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 721, 859, 1144
BccI CCATC 3 cut(s) 196, 205, 964
BceAI ACGGC 2 cut(s) 228, 718
BciT130I CCWGG 1 cut(s) 866
BcoDI GTCTC 2 cut(s) 22, 1195
BfaI CTAG 3 cut(s) 101, 762, 1170
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 782
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 3 cut(s) 735, 848, 1158
BlnI CCTAGG 1 cut(s) 761
BlsI GCNGC 3 cut(s) 736, 849, 1159
Bme1390I CCNGG 1 cut(s) 866
Bme18I GGWCC 2 cut(s) 746, 950
BmeT110I CYCGRG 2 cut(s) 822, 946
BmgT120I GGNCC 2 cut(s) 746, 950
BmiI GGNNCC 5 cut(s) 59, 727, 951, 952, 1266
BmrFI CCNGG 1 cut(s) 866
BmrI ACTGGG 2 cut(s) 156, 1343
BmsI GCATC 3 cut(s) 366, 559, 877
BmuI ACTGGG 2 cut(s) 156, 1343
BpiI GAAGAC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 2 cut(s) 165, 239
Bpu10I CCTNAGC 2 cut(s) 224, 248
BpuEI CTTGAG 2 cut(s) 118, 840
Bsa29I ATCGAT 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 519, 761
BsaWI WCCGGW 2 cut(s) 330, 1256
Bsc4I CCNNNNNNNGG 1 cut(s) 1004
Bse1I ACTGG 6 cut(s) 162, 182, 222, 300, 814, 1338
BseBI CCWGG 1 cut(s) 866
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 519, 761
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 1004
BseMII CTCAG 4 cut(s) 215, 633, 1031, 1115
BseNI ACTGG 6 cut(s) 162, 182, 222, 300, 814, 1338
BseXI GCAGC 3 cut(s) 721, 859, 1144
BseYI CCCAGC 1 cut(s) 980
BshFI GGCC 2 cut(s) 206, 828
BshNI GGYRCC 2 cut(s) 57, 1264
BshVI ATCGAT 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 96, 711
BsiHKCI CYCGRG 2 cut(s) 822, 946
BsiSI CCGG 2 cut(s) 331, 1257
BslFI GGGAC 2 cut(s) 133, 936
BslI CCNNNNNNNGG 1 cut(s) 1004
BsmAI GTCTC 2 cut(s) 22, 1195
BsmFI GGGAC 2 cut(s) 133, 936
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 2 cut(s) 206, 828
BsoBI CYCGRG 2 cut(s) 822, 946
Bsp1286I GDGCHC 2 cut(s) 96, 711
Bsp143I GATC 5 cut(s) 358, 601, 720, 1292, 1337
BspACI CCGC 4 cut(s) 668, 732, 779, 784
BspANI GGCC 2 cut(s) 206, 828
BspCNI CTCAG 4 cut(s) 216, 634, 1032, 1114
BspDI ATCGAT 1 cut(s) 113
BspLI GGNNCC 5 cut(s) 59, 727, 951, 952, 1266
BspMI ACCTGC 1 cut(s) 782
BspPI GGATC 2 cut(s) 1300, 1345
BspQI GCTCTTC 1 cut(s) 716
BspT107I GGYRCC 2 cut(s) 57, 1264
BsrI ACTGG 6 cut(s) 162, 182, 222, 300, 814, 1338
BssECI CCNNGG 2 cut(s) 519, 761
BssMI GATC 5 cut(s) 358, 601, 720, 1292, 1337
BssT1I CCWWGG 2 cut(s) 519, 761
Bst2UI CCWGG 1 cut(s) 866
Bst4CI ACNGT 4 cut(s) 129, 147, 900, 1231
Bst6I CTCTTC 2 cut(s) 716, 1185
BstC8I GCNNGC 4 cut(s) 707, 862, 894, 1037
BstDEI CTNAG 6 cut(s) 224, 248, 642, 1016, 1040, 1101
BstF5I GGATG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 3 cut(s) 122, 381, 892
BstKTI GATC 5 cut(s) 361, 604, 723, 1295, 1340
BstMAI GTCTC 2 cut(s) 22, 1195
BstMBI GATC 5 cut(s) 358, 601, 720, 1292, 1337
BstMWI GCNNNNNNNGC 4 cut(s) 212, 734, 776, 1154
BstNI CCWGG 1 cut(s) 866
BstSCI CCNGG 1 cut(s) 864
BstV1I GCAGC 3 cut(s) 721, 859, 1144
BstV2I GAAGAC 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 113
BsuRI GGCC 2 cut(s) 206, 828
BsuTUI ATCGAT 1 cut(s) 113
BtsCI GGATG 1 cut(s) 188
BtsI GCAGTG 2 cut(s) 1130, 1320
BtsIMutI CAGTG 4 cut(s) 215, 1130, 1227, 1320
BveI ACCTGC 1 cut(s) 782
Cac8I GCNNGC 4 cut(s) 707, 862, 894, 1037
CfoI GCGC 3 cut(s) 122, 381, 892
Cfr13I GGNCC 2 cut(s) 746, 950
ClaI ATCGAT 1 cut(s) 113
Csp6I GTAC 4 cut(s) 58, 700, 923, 1265
CviAII CATG 4 cut(s) 97, 283, 955, 1062
CviQI GTAC 4 cut(s) 58, 700, 923, 1265
DdeI CTNAG 6 cut(s) 224, 248, 642, 1016, 1040, 1101
DpnI GATC 5 cut(s) 360, 603, 722, 1294, 1339
DpnII GATC 5 cut(s) 358, 601, 720, 1292, 1337
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 716, 1185
EarI CTCTTC 2 cut(s) 716, 1185
Ecl136II GAGCTC 1 cut(s) 709
Eco130I CCWWGG 2 cut(s) 519, 761
Eco24I GRGCYC 1 cut(s) 711
Eco47I GGWCC 2 cut(s) 746, 950
Eco47III AGCGCT 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 709
Eco57I CTGAAG 1 cut(s) 1077
Eco88I CYCGRG 2 cut(s) 822, 946
EcoICRI GAGCTC 1 cut(s) 709
EcoO109I RGGNCCY 1 cut(s) 950
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 864
EcoT14I CCWWGG 2 cut(s) 519, 761
EcoT22I ATGCAT 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 711
ErhI CCWWGG 2 cut(s) 519, 761
FaeI CATG 4 cut(s) 100, 286, 958, 1065
FalI AAGNNNNNCTT 6 cut(s) 876, 908, 1188, 1220, 1302, 1334
FaqI GGGAC 2 cut(s) 133, 936
FatI CATG 4 cut(s) 96, 282, 954, 1061
FauI CCCGC 2 cut(s) 675, 772
FauNDI CATATG 1 cut(s) 1077
Fnu4HI GCNGC 3 cut(s) 735, 848, 1158
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 3 cut(s) 735, 848, 1158
FspBI CTAG 3 cut(s) 101, 762, 1170
FspI TGCGCA 1 cut(s) 380
GlaI GCGC 3 cut(s) 121, 380, 891
GluI GCNGC 3 cut(s) 735, 848, 1158
GsaI CCCAGC 1 cut(s) 984
GsuI CTGGAG 2 cut(s) 165, 239
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 2 cut(s) 206, 828
HapII CCGG 2 cut(s) 331, 1257
HhaI GCGC 3 cut(s) 122, 381, 892
Hin1II CATG 4 cut(s) 100, 286, 958, 1065
Hin6I GCGC 3 cut(s) 120, 379, 890
HinP1I GCGC 3 cut(s) 120, 379, 890
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 8 cut(s) 15, 80, 502, 524, 910, 958, 1105, 1151
HpaII CCGG 2 cut(s) 331, 1257
HphI GGTGA 2 cut(s) 117, 320
Hpy166II GTNNAC 1 cut(s) 1165
Hpy188I TCNGA 9 cut(s) 67, 193, 358, 643, 725, 746, 1096, 1104, 1297
Hpy188III TCNNGA 6 cut(s) 141, 275, 447, 718, 884, 1177
Hpy8I GTNNAC 1 cut(s) 1165
Hpy99I CGWCG 2 cut(s) 205, 214
HpyAV CCTTC 3 cut(s) 379, 574, 1283
HpyCH4III ACNGT 4 cut(s) 129, 147, 900, 1231
HpyCH4IV ACGT 1 cut(s) 1284
HpyCH4V TGCA 7 cut(s) 282, 324, 770, 847, 896, 1119, 1135
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 734, 776, 1154
HpyF3I CTNAG 6 cut(s) 224, 248, 642, 1016, 1040, 1101
HpySE526I ACGT 1 cut(s) 1284
Hsp92II CATG 4 cut(s) 100, 286, 958, 1065
HspAI GCGC 3 cut(s) 120, 379, 890
KflI GGGWCCC 1 cut(s) 950
KpnI GGTACC 2 cut(s) 61, 1268
Kzo9I GATC 5 cut(s) 358, 601, 720, 1292, 1337
LguI GCTCTTC 1 cut(s) 716
LmnI GCTCC 2 cut(s) 220, 725
Lsp1109I GCAGC 3 cut(s) 721, 859, 1144
LweI GCATC 3 cut(s) 366, 559, 877
MaeI CTAG 3 cut(s) 101, 762, 1170
MaeII ACGT 1 cut(s) 1284
MaeIII GTNAC 1 cut(s) 1065
MalI GATC 5 cut(s) 360, 603, 722, 1294, 1339
MboI GATC 5 cut(s) 358, 601, 720, 1292, 1337
MboII GAAGA 6 cut(s) 338, 505, 596, 703, 1202, 1226
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 2 cut(s) 96, 711
MluCI AATT 9 cut(s) 239, 342, 496, 597, 626, 830, 1113, 1239, 1347
MlyI GAGTC 3 cut(s) 24, 74, 952
MmeI TCCRAC 4 cut(s) 439, 724, 882, 1287
MnlI CCTC 9 cut(s) 25, 142, 219, 482, 649, 725, 818, 1003, 1110
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 2 cut(s) 1088, 1112
MslI CAYNNNNRTG 2 cut(s) 89, 1259
MspA1I CMGCKG 2 cut(s) 734, 1247
MspI CCGG 2 cut(s) 331, 1257
MspR9I CCNGG 1 cut(s) 866
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 1 cut(s) 866
MwoI GCNNNNNNNGC 4 cut(s) 212, 734, 776, 1154
NdeI CATATG 1 cut(s) 1077
NdeII GATC 5 cut(s) 358, 601, 720, 1292, 1337
NlaIII CATG 4 cut(s) 100, 286, 958, 1065
NlaIV GGNNCC 5 cut(s) 59, 727, 951, 952, 1266
NmeAIII GCCGAG 1 cut(s) 38
NsbI TGCGCA 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 822
PciSI GCTCTTC 1 cut(s) 716
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PctI GAATGC 1 cut(s) 324
PfeI GAWTC 5 cut(s) 502, 524, 910, 1105, 1151
PflMI CCANNNNNTGG 1 cut(s) 1004
PkrI GCNGC 3 cut(s) 736, 849, 1159
PleI GAGTC 3 cut(s) 23, 74, 952
PpsI GAGTC 3 cut(s) 23, 74, 952
PpuMI RGGWCCY 1 cut(s) 950
PsiI TTATAA 1 cut(s) 941
Psp124BI GAGCTC 1 cut(s) 711
Psp1406I AACGTT 1 cut(s) 1284
Psp5II RGGWCCY 1 cut(s) 950
Psp6I CCWGG 1 cut(s) 864
PspFI CCCAGC 1 cut(s) 980
PspGI CCWGG 1 cut(s) 864
PspN4I GGNNCC 5 cut(s) 59, 727, 951, 952, 1266
PspPI GGNCC 2 cut(s) 746, 950
PspPPI RGGWCCY 1 cut(s) 950
PspXI VCTCGAGB 1 cut(s) 822
PvuII CAGCTG 1 cut(s) 1247
RsaI GTAC 4 cut(s) 59, 701, 924, 1266
RsaNI GTAC 4 cut(s) 58, 700, 923, 1265
RseI CAYNNNNRTG 2 cut(s) 89, 1259
SacI GAGCTC 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 2 cut(s) 1088, 1112
SatI GCNGC 3 cut(s) 735, 848, 1158
Sau3AI GATC 5 cut(s) 358, 601, 720, 1292, 1337
Sau96I GGNCC 2 cut(s) 746, 950
SchI GAGTC 3 cut(s) 24, 74, 952
ScrFI CCNGG 1 cut(s) 866
SduI GDGCHC 2 cut(s) 96, 711
SfaNI GCATC 3 cut(s) 366, 559, 877
Sfr274I CTCGAG 1 cut(s) 822
SinI GGWCC 2 cut(s) 746, 950
SlaI CTCGAG 1 cut(s) 822
SmiMI CAYNNNNRTG 2 cut(s) 89, 1259
SmlI CTYRAG 3 cut(s) 133, 822, 855
SmoI CTYRAG 3 cut(s) 133, 822, 855
Sse9I AATT 9 cut(s) 239, 342, 496, 597, 626, 830, 1113, 1239, 1347
SsiI CCGC 4 cut(s) 668, 732, 779, 784
SspI AATATT 1 cut(s) 1086
SspMI CTAG 3 cut(s) 101, 762, 1170
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 1 cut(s) 864
StyI CCWWGG 2 cut(s) 519, 761
TaaI ACNGT 4 cut(s) 129, 147, 900, 1231
TaiI ACGT 1 cut(s) 1287
TaqI TCGA 4 cut(s) 113, 823, 834, 961
TaqII GACCGA 1 cut(s) 786
TasI AATT 9 cut(s) 239, 342, 496, 597, 626, 830, 1113, 1239, 1347
TfiI GAWTC 5 cut(s) 502, 524, 910, 1105, 1151
Tru1I TTAA 2 cut(s) 1088, 1112
Tru9I TTAA 2 cut(s) 1088, 1112
TscAI CASTG 4 cut(s) 222, 1137, 1234, 1320
TseI GCWGC 3 cut(s) 734, 847, 1157
TspDTI ATGAA 6 cut(s) 156, 250, 662, 933, 1064, 1227
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 4 cut(s) 222, 1137, 1234, 1320
Van91I CCANNNNNTGG 1 cut(s) 1004
VpaK11BI GGWCC 2 cut(s) 746, 950
XapI RAATTY 2 cut(s) 239, 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 822
XmaJI CCTAGG 1 cut(s) 761
XspI CTAG 3 cut(s) 101, 762, 1170
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.