Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Forward (+)

11196259 .. 11199101

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGAGACATCTGAGGGTCTTGGTGCAACAGTATCTACTTGTTGTTCATAAGCTGCTTCCTGGACCCAGACCCCTAGCCCTAATCCCAACCTCCCAATCATCTCCACTTGCTGTTCAAAAGAAATCATCTCCACTTGCTCTTCAAATTTACAGACCCTTGTCCACTATTTCAGGTCATGTCGCACATGATGAAGCATCGGTGCCTGTTGATTCTCTAATTCGCTTTTTACCCTTAACCGCGAGCTACACTGCTCAATATGATTACATACTGAGGGCAATCCGAGTTGACTGTTTGAATGCGGTCTGCTGCTTCTATGCGGGGAGCCCACCTATGCACTTACCTCTAATCGTTCAAGCTTTCGTGGAGAGATTCCCACACGTAAAAATATATCATTTTCTCATTTTTAATCTGCGTCAGAATAATGACACTTACGAGGCTGCTATGAGAATGTTGAATGTTACCAGAACACCATTGTTCCATTTCTTTCGAAATGGTAAACGGGTTGATCAGCTAGTTGGTGAATCCATCGTGCTCTTGGACAAGACTCTTAAAAACCTTTACAACATTCGAGAACTTGACACACAAGCTAAGGAAGTCGCAGATCATAAAGGAGCTGTTGGATGGAGTGAGAGCAAAGTGTCCGCCTCGTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

219

Amino Acids

24.76

Weight (kDa)

9.4

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AccII	CGCG	1 cut(s)	242
AciI	CCGC	4 cut(s)	240, 302, 320, 645
AcsI	RAATTY	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	5 cut(s)	119, 146, 298, 356, 457
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	6 cut(s)	55, 246, 359, 514, 590, 617
AluI	AGCT	6 cut(s)	55, 246, 359, 514, 590, 617
Alw21I	GWGCWC	1 cut(s)	537
ApeKI	GCWGC	3 cut(s)	55, 309, 440
ApoI	RAATTY	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	533
AsuII	TTCGAA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	42, 296, 427
BccI	CCATC	2 cut(s)	536, 618
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	508
BfaI	CTAG	2 cut(s)	77, 515
BisI	GCNGC	3 cut(s)	56, 310, 441
BlsI	GCNGC	3 cut(s)	57, 311, 442
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	3 cut(s)	67, 204, 326
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	206
BoxI	GACNNNNGTC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	629
BseMII	CTCAG	2 cut(s)	5, 263
BseXI	GCAGC	3 cut(s)	42, 296, 427
Bsh1236I	CGCG	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	329, 537
Bsp143I	GATC	2 cut(s)	508, 604
BspACI	CCGC	4 cut(s)	240, 302, 320, 645
BspCNI	CTCAG	2 cut(s)	6, 264
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	3 cut(s)	67, 204, 326
BspQI	GCTCTTC	1 cut(s)	147
BspT104I	TTCGAA	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	202
BssMI	GATC	2 cut(s)	508, 604
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	33, 293
Bst6I	CTCTTC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	382
BstBI	TTCGAA	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	14, 272, 591
BstF5I	GGATG	1 cut(s)	629
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	2 cut(s)	511, 607
BstMBI	GATC	2 cut(s)	508, 604
BstNI	CCWGG	1 cut(s)	63
BstPAI	GACNNNNGTC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	3 cut(s)	42, 296, 427
BtsCI	GGATG	1 cut(s)	629
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	404
CviAII	CATG	2 cut(s)	179, 188
CviJI	RGCY	9 cut(s)	55, 80, 246, 327, 359, 440, 514, 590, 617
CviKI_1	RGCY	9 cut(s)	55, 80, 246, 327, 359, 440, 514, 590, 617
DdeI	CTNAG	3 cut(s)	14, 272, 591
DpnI	GATC	2 cut(s)	510, 606
DpnII	GATC	2 cut(s)	508, 604
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	2 cut(s)	182, 191
FatI	CATG	2 cut(s)	178, 187
FauI	CCCGC	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	56, 310, 441
FokI	GGATG	1 cut(s)	636
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	56, 310, 441
FspBI	CTAG	2 cut(s)	77, 515
GluI	GCNGC	3 cut(s)	56, 310, 441
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	182, 191
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	4 cut(s)	212, 372, 524, 547
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	3 cut(s)	165, 289, 500
Hpy188I	TCNGA	3 cut(s)	15, 284, 420
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	3 cut(s)	165, 289, 500
HpyCH4III	ACNGT	2 cut(s)	33, 293
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	28, 337
HpyF3I	CTNAG	3 cut(s)	14, 272, 591
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	182, 191
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	508, 604
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	324, 614
LpnPI	CCDG	6 cut(s)	48, 75, 82, 159, 219, 478
Lsp1109I	GCAGC	3 cut(s)	42, 296, 427
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	77, 515
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	2 cut(s)	510, 606
MboI	GATC	2 cut(s)	508, 604
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	329, 537
MluCI	AATT	2 cut(s)	147, 219
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	601, 633
MnlI	CCTC	6 cut(s)	9, 103, 267, 354, 430, 658
MseI	TTAA	3 cut(s)	236, 408, 552
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	242
NdeII	GATC	2 cut(s)	508, 604
NlaIII	CATG	2 cut(s)	182, 191
NlaIV	GGNNCC	3 cut(s)	67, 204, 326
NspV	TTCGAA	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	3 cut(s)	212, 372, 524
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	57, 311, 442
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	382
PshAI	GACNNNNGTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	67, 204, 326
PspPI	GGNCC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	236, 408, 552
SatI	GCNGC	3 cut(s)	56, 310, 441
Sau3AI	GATC	2 cut(s)	508, 604
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	2 cut(s)	329, 537
SfaNI	GCATC	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	490
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	2 cut(s)	147, 219
SsiI	CCGC	4 cut(s)	240, 302, 320, 645
SspMI	CTAG	2 cut(s)	77, 515
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	33, 293
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	490, 571
TasI	AATT	2 cut(s)	147, 219
TfiI	GAWTC	3 cut(s)	212, 372, 524
Tru1I	TTAA	3 cut(s)	236, 408, 552
Tru9I	TTAA	3 cut(s)	236, 408, 552
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	3 cut(s)	55, 309, 440
TspDTI	ATGAA	2 cut(s)	38, 207
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	2 cut(s)	77, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.