Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

38166129 .. 38167901

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG306700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATGGTTGTTGACCTCTACACTTTAGCCGTCGATGGCCGAGATTCTAGAGCCCAGGATTTGAGGCGCCTCGCCTCATTGATTCCATTGCAACCCATTTACAGACATTCAGGGGATTTGACATTCGATAAAATTCGAGATACATCTTTGCAAGCAGTCTGCTGCTTCTATGGCACGAGTGACTCTAGTAACGATAGGTACGCACCTCCAATCATTCAAAGGCTGGTGGACCAATTCCCTTCTTTAAAAGCATTTCATTTTGTCATTGAAGACAATGATGAGGATTTATCTGATGATTTCACAATGACAGTGTTGAACATTTCAAGTCTGCCAATGTTTCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTTTATCAGGCGCTTCAAGACAGTTCTTGAAACACTTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

142

Amino Acids

16.4

Weight (kDa)

4.82

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	6 cut(s)	218, 269, 316, 324, 400, 413
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	373, 377
AluI	AGCT	2 cut(s)	373, 377
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	69, 396
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	392
AsuNHI	GCTAGC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	56
BfaI	CTAG	3 cut(s)	48, 186, 374
BfoI	RGCGCY	2 cut(s)	70, 397
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	56
BmtI	GCTAGC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	68
BspOI	GCTAGC	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	310, 406
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	153, 375
BstH2I	RGCGCY	2 cut(s)	70, 397
BstHHI	GCGC	2 cut(s)	69, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	153, 375
CfoI	GCGC	2 cut(s)	69, 396
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	199
CviJI	RGCY	6 cut(s)	29, 39, 53, 223, 373, 377
CviKI_1	RGCY	6 cut(s)	29, 39, 53, 223, 373, 377
CviQI	GTAC	1 cut(s)	199
DinI	GGCGCC	1 cut(s)	68
DraI	TTTAAA	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	55
EgeI	GGCGCC	1 cut(s)	68
EheI	GGCGCC	1 cut(s)	68
FaiI	YATR	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	3 cut(s)	48, 186, 374
GlaI	GCGC	2 cut(s)	68, 395
GluI	GCNGC	1 cut(s)	163
HaeII	RGCGCY	2 cut(s)	70, 397
HaeIII	GGCC	1 cut(s)	39
HhaI	GCGC	2 cut(s)	69, 396
Hin1I	GRCGYC	1 cut(s)	67
Hin6I	GCGC	2 cut(s)	67, 394
HinP1I	GCGC	2 cut(s)	67, 394
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	44, 82, 182
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	2 cut(s)	13, 229
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	4 cut(s)	48, 137, 400, 410
Hpy8I	GTNNAC	2 cut(s)	13, 229
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	2 cut(s)	310, 406
HpyCH4V	TGCA	2 cut(s)	91, 151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	67
HspAI	GCGC	2 cut(s)	67, 394
KasI	GGCGCC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	6 cut(s)	41, 68, 96, 209, 363, 376
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	3 cut(s)	48, 186, 374
MaeIII	GTNAC	2 cut(s)	179, 188
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	2 cut(s)	132, 233
Mly113I	GGCGCC	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	7 cut(s)	26, 57, 80, 85, 216, 274, 361
MseI	TTAA	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	171
NarI	GGCGCC	1 cut(s)	67
NheI	GCTAGC	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	44, 82
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	176
PluTI	GGCGCC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	6 cut(s)	18, 200, 208, 366, 375, 379
SfoI	GGCGCC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	2 cut(s)	132, 233
SspDI	GGCGCC	1 cut(s)	66
SspMI	CTAG	3 cut(s)	48, 186, 374
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	310, 406
TaqI	TCGA	3 cut(s)	33, 126, 136
TasI	AATT	2 cut(s)	132, 233
TfiI	GAWTC	2 cut(s)	44, 82
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	245, 329
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	132
XbaI	TCTAGA	1 cut(s)	47
XspI	CTAG	3 cut(s)	48, 186, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.