Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Forward (+)

20473619 .. 20477103

Gene Structure 3485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGCAACATCACCGATGACTTCCTTGAATTTGTGGCGGAGACGCGTCCAATGTATCATTTCTATCAGAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTATATCAAACGCTTCAAGACAGTTCTTGAAAAACTTTACAACCCTCAAGAAGTTGGCACAAAAGCCAAGGAAAATGTGATGCATGAAGGCGTAGTTCGAGGACGGAACAAGGAGGAAAGAAAAAACCCTATGATGAGCGTTTATATGAATCAATTATTTCCAAGATCTAATTCCAGTTTCAAGTTATCTAGTGGGAATGCCTTAGAAGCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTAGATGCAGGACTTGGGACCCCCAGAATTTGCATGCAAGATGAGGCTACAGGAGTGCCAAACCGAGCCATCAGGTTTAAGACTAAGGTGGGATACATTTCTAAGGGGGAGTGGCCGGTGAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

18.06

Weight (kDa)

8.61

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	46
AciI	CCGC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	29, 372
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	321
AflII	CTTAAG	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	29, 118, 131, 283
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	3 cut(s)	91, 95, 311
AluI	AGCT	3 cut(s)	91, 95, 311
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	458
ApoI	RAATTY	2 cut(s)	29, 372
AspS9I	GGNCC	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	4, 110
AsuNHI	GCTAGC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	363
BccI	CCATC	1 cut(s)	422
BciVI	GTATCC	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	92, 291
BfmI	CTRYAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	431
BglII	AGATCT	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	2 cut(s)	364, 365
BmsI	GCATC	2 cut(s)	171, 340
BmtI	GCTAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	364, 365
BspOI	GCTAGC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	124
BstAFI	CTTAAG	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	93, 380
BstDEI	CTNAG	3 cut(s)	304, 429, 447
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	93, 380
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	363
CseI	GACGC	2 cut(s)	35, 52
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	2 cut(s)	185, 379
CviJI	RGCY	7 cut(s)	91, 95, 167, 311, 392, 413, 460
CviKI_1	RGCY	7 cut(s)	91, 95, 167, 311, 392, 413, 460
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	304, 429, 447
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	2 cut(s)	188, 382
FaiI	YATR	6 cut(s)	105, 186, 233, 246, 248, 380
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	2 cut(s)	184, 378
FspBI	CTAG	2 cut(s)	92, 291
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	461
HgaI	GACGC	2 cut(s)	35, 52
Hin1II	CATG	2 cut(s)	188, 382
HinfI	GANTC	2 cut(s)	250, 466
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	4, 110
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	118, 128, 149
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	184, 353, 378, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	304, 429, 447
Hsp92II	CATG	2 cut(s)	188, 382
KflI	GGGWCCC	1 cut(s)	363
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	81, 289, 339, 381, 382, 403
LweI	GCATC	2 cut(s)	171, 340
MaeI	CTAG	2 cut(s)	92, 291
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	1 cut(s)	344
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	4 cut(s)	29, 254, 271, 372
MluI	ACGCGT	1 cut(s)	44
MnlI	CCTC	5 cut(s)	79, 156, 194, 208, 382
Mph1103I	ATGCAT	1 cut(s)	186
MseI	TTAA	2 cut(s)	326, 423
MspCI	CTTAAG	1 cut(s)	325
MspI	CCGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	304
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	1 cut(s)	266
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	188, 382
NlaIV	GGNNCC	2 cut(s)	364, 365
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	382
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	250, 466
PpuMI	RGGWCCY	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	364, 365
PspPI	GGNCC	1 cut(s)	363
PspPPI	RGGWCCY	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	326, 423
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	1 cut(s)	363
SetI	ASST	6 cut(s)	84, 93, 97, 313, 422, 435
SfaNI	GCATC	2 cut(s)	171, 340
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	147, 325
SmoI	CTYRAG	2 cut(s)	147, 325
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	4 cut(s)	29, 254, 271, 372
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	92, 291
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	199
TasI	AATT	4 cut(s)	29, 254, 271, 372
TfiI	GAWTC	2 cut(s)	250, 466
Tru1I	TTAA	2 cut(s)	326, 423
Tru9I	TTAA	2 cut(s)	326, 423
TspDTI	ATGAA	2 cut(s)	201, 263
TspGWI	ACGGA	1 cut(s)	220
Vha464I	CTTAAG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	363
XapI	RAATTY	2 cut(s)	29, 372
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	2 cut(s)	92, 291
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.