Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

63754262 .. 63756521

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020328

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCTTTGAGGGTTTTGGTTGGCATTCGTAAGCTGCTTGCTGGAACCTCCCCCCAATCATCATATTACAGACCCTCAATCCCAACCTCCCAATTCTCCACTTTAGCCGTCGATGGCCAAGACAAGCGCCTCTCCTCAATGTTTCCGCTGCAACCCATTTCTGGGCATTCAGGGGTTTTGACATTCGACAAAATTCGAGGCAATATTCGAGATACATCTTTGCAAGCAGTCTGCTGCTTCTATGGCACTAATGACTTCAGCTTTAAGTACATTCAAAGGCTGGTGGACAAATTCCCTCCTGTAAAAGCATTTCATTTTGTCCTTGACGACAATGTTAAGGATTCGTCTTCAATGAGAGTGTTGAACATTTCAAGTCTGCCAATGTATCATTTCTATCAAAATGGGGAAAAAGTAGAGGAGCTAGCTGGTGATTATATCAAACGCTTCAAGACAGTTCTTGAAAAACTTTACAACCCTCAAGAAGTTGGCACAAAAGCCAAGGAAAATGTGATGCATAAAGGCGTAGTTCGAGGACGGAACGAGGAGGAAGGAAAAAAGCCTATGATGAGCATTTATATGAATCAATTATTTCCAAGATCTAATTCCAGTTTTAAGTTATATAGCGGGAATGCCTTAGAAGCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTAGATGCAGGACTTGGGACCCCCAGAATTTGCATGCAAGATGAGGCTACAGGAGTGCCAAACCGAGCCATCAGGTTTAAGACTAAGGTGGGATACATTTCTAAGGGGGGAGTGGCAGGTGAATCAGTGATCAAAGAGCAGATGTTGGAGAGATTCTTCATCGATGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCAGCCGCCAGGTTTCAGTCTTTGGTGGGATCCACAGATGTAGTGCCTGGTGAACCGCATCTTCTTCTTCCACGAAGATTCAGACAGAGGCAAGCTTGGATGGAACTGAACAAGATTTGGCGAAGGAATAGAAAGGTAAAGGGCTTTATTCTTCAGAAAGTCAAGGGAGGTTATTTAGTAGGCATCGGGGGTTTCATTACTTTTCTTCCAATCCGCCGAAAAATAGCGATATCGAATGGTCGATTCACCATTGAGAGCATTAACCGCAAAAGGCCTAATATTGTGGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

44.01

Weight (kDa)

10.06

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	782
Acc36I	ACCTGC	1 cut(s)	782
AciI	CCGC	6 cut(s)	146, 624, 879, 929, 1087, 1138
AclWI	GGATC	2 cut(s)	897, 910
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	3 cut(s)	192, 290, 702
AcuI	CTGAAG	3 cut(s)	241, 663, 1010
AfaI	GTAC	2 cut(s)	269, 651
AfiI	CCNNNNNNNGG	2 cut(s)	161, 162
AflII	CTTAAG	1 cut(s)	655
AgsI	TTSAA	6 cut(s)	275, 351, 364, 372, 448, 461
AjnI	CCWGG	2 cut(s)	881, 919
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
AluBI	AGCT	6 cut(s)	34, 261, 421, 425, 641, 968
AluI	AGCT	6 cut(s)	34, 261, 421, 425, 641, 968
AlwI	GGATC	2 cut(s)	897, 910
AoxI	GGCC	2 cut(s)	115, 1145
ApeKI	GCWGC	4 cut(s)	34, 148, 234, 875
ApoI	RAATTY	3 cut(s)	192, 290, 702
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	693
AsuHPI	GGTGA	5 cut(s)	440, 806, 863, 935, 1111
AsuNHI	GCTAGC	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	693
BalI	TGGCCA	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	902
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	21, 135, 221, 887
BccI	CCATC	3 cut(s)	107, 752, 967
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	883, 921
BciVI	GTATCC	1 cut(s)	761
BclI	TGATCA	1 cut(s)	804
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	130
BfrI	CTTAAG	1 cut(s)	655
BfuAI	ACCTGC	1 cut(s)	782
BfuI	GTATCC	1 cut(s)	761
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	5 cut(s)	35, 149, 235, 876, 879
BlsI	GCNGC	5 cut(s)	36, 150, 236, 877, 880
Bme1390I	CCNGG	2 cut(s)	883, 921
Bme18I	GGWCC	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	4 cut(s)	46, 694, 695, 904
BmrFI	CCNGG	2 cut(s)	883, 921
BmsI	GCATC	4 cut(s)	501, 670, 940, 1065
BmtI	GCTAGC	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	837
BsaJI	CCNNGG	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 162
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	883, 921
BseCI	ATCGAT	1 cut(s)	837
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	1 cut(s)	978
BseLI	CCNNNNNNNGG	2 cut(s)	161, 162
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	3 cut(s)	124, 431, 557
BseXI	GCAGC	4 cut(s)	21, 135, 221, 887
BshFI	GGCC	2 cut(s)	117, 1147
BshVI	ATCGAT	1 cut(s)	837
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	2 cut(s)	161, 162
BsmFI	GGGAC	1 cut(s)	706
BsmI	GAATGC	3 cut(s)	24, 166, 634
BsnI	GGCC	2 cut(s)	117, 1147
Bsp143I	GATC	4 cut(s)	596, 804, 861, 902
BspACI	CCGC	6 cut(s)	146, 624, 879, 929, 1087, 1138
BspANI	GGCC	2 cut(s)	117, 1147
BspDI	ATCGAT	1 cut(s)	837
BspLI	GGNNCC	4 cut(s)	46, 694, 695, 904
BspMI	ACCTGC	1 cut(s)	782
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	897, 910
BspTI	CTTAAG	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	4 cut(s)	596, 804, 861, 902
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	883, 921
Bst4CI	ACNGT	1 cut(s)	454
BstAFI	CTTAAG	1 cut(s)	655
BstC8I	GCNNGC	6 cut(s)	39, 225, 423, 710, 873, 966
BstDEI	CTNAG	3 cut(s)	634, 759, 777
BstF5I	GGATG	1 cut(s)	978
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	4 cut(s)	599, 807, 864, 905
BstMBI	GATC	4 cut(s)	596, 804, 861, 902
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 638, 1137
BstNI	CCWGG	2 cut(s)	883, 921
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	2 cut(s)	881, 919
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	4 cut(s)	21, 135, 221, 887
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	596, 902
BstYI	RGATCY	2 cut(s)	596, 902
Bsu15I	ATCGAT	1 cut(s)	837
BsuI	GTATCC	1 cut(s)	761
BsuRI	GGCC	2 cut(s)	117, 1147
BsuTUI	ATCGAT	1 cut(s)	837
BtsCI	GGATG	1 cut(s)	978
BtsIMutI	CAGTG	1 cut(s)	807
BveI	ACCTGC	1 cut(s)	782
Cac8I	GCNNGC	6 cut(s)	39, 225, 423, 710, 873, 966
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	693
ClaI	ATCGAT	1 cut(s)	837
Csp6I	GTAC	2 cut(s)	268, 650
CviAII	CATG	1 cut(s)	709
CviQI	GTAC	2 cut(s)	268, 650
DdeI	CTNAG	3 cut(s)	634, 759, 777
DpnI	GATC	4 cut(s)	598, 806, 863, 904
DpnII	GATC	4 cut(s)	596, 804, 861, 902
EaeI	YGGCCR	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	1076
Eco130I	CCWWGG	1 cut(s)	498
Eco147I	AGGCCT	1 cut(s)	1147
Eco32I	GATATC	1 cut(s)	1104
Eco47I	GGWCC	1 cut(s)	693
Eco57I	CTGAAG	3 cut(s)	241, 663, 1010
EcoO109I	RGGNCCY	1 cut(s)	693
EcoRII	CCWGG	2 cut(s)	881, 919
EcoRV	GATATC	1 cut(s)	1104
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	1 cut(s)	712
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	1 cut(s)	708
FauI	CCCGC	1 cut(s)	617
FbaI	TGATCA	1 cut(s)	804
Fnu4HI	GCNGC	5 cut(s)	35, 149, 235, 876, 879
FokI	GGATG	1 cut(s)	985
Fsp4HI	GCNGC	5 cut(s)	35, 149, 235, 876, 879
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	5 cut(s)	35, 149, 235, 876, 879
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	117, 1147
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	712
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	966
HinfI	GANTC	7 cut(s)	341, 580, 797, 828, 854, 951, 1116
HphI	GGTGA	5 cut(s)	440, 806, 863, 935, 1111
Hpy166II	GTNNAC	2 cut(s)	286, 926
Hpy188I	TCNGA	2 cut(s)	956, 1029
Hpy188III	TCNNGA	4 cut(s)	209, 448, 458, 479
Hpy8I	GTNNAC	2 cut(s)	286, 926
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	542, 990
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	6 cut(s)	151, 223, 514, 683, 708, 712
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 638, 1137
HpyF3I	CTNAG	3 cut(s)	634, 759, 777
Hsp92II	CATG	1 cut(s)	712
HspAI	GCGC	1 cut(s)	127
KflI	GGGWCCC	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	804
Kzo9I	GATC	4 cut(s)	596, 804, 861, 902
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	4 cut(s)	21, 135, 221, 887
LweI	GCATC	4 cut(s)	501, 670, 940, 1065
MaeI	CTAG	1 cut(s)	422
MalI	GATC	4 cut(s)	598, 806, 863, 904
MboI	GATC	4 cut(s)	596, 804, 861, 902
MboII	GAAGA	9 cut(s)	339, 674, 823, 926, 929, 932, 960, 1016, 1070
MflI	RGATCY	2 cut(s)	596, 902
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	6 cut(s)	92, 192, 290, 584, 601, 702
MluNI	TGGCCA	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	801
Mox20I	TGGCCA	1 cut(s)	117
Mph1103I	ATGCAT	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	6 cut(s)	264, 336, 612, 656, 753, 1134
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	148
MspCI	CTTAAG	1 cut(s)	655
MspR9I	CCNGG	2 cut(s)	883, 921
Mva1269I	GAATGC	3 cut(s)	24, 166, 634
MvaI	CCWGG	2 cut(s)	883, 921
MwoI	GCNNNNNNNGC	3 cut(s)	243, 638, 1137
NdeII	GATC	4 cut(s)	596, 804, 861, 902
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	1 cut(s)	712
NlaIV	GGNNCC	4 cut(s)	46, 694, 695, 904
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	1 cut(s)	712
PaeI	GCATGC	1 cut(s)	712
PaqCI	CACCTGC	1 cut(s)	782
PceI	AGGCCT	1 cut(s)	1147
PctI	GAATGC	3 cut(s)	24, 166, 634
PfeI	GAWTC	7 cut(s)	341, 580, 797, 828, 854, 951, 1116
PkrI	GCNGC	5 cut(s)	36, 150, 236, 877, 880
PpuMI	RGGWCCY	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	881, 919
PspGI	CCWGG	2 cut(s)	881, 919
PspN4I	GGNNCC	4 cut(s)	46, 694, 695, 904
PspPI	GGNCC	1 cut(s)	693
PspPPI	RGGWCCY	1 cut(s)	693
PsuI	RGATCY	2 cut(s)	596, 902
RsaI	GTAC	2 cut(s)	269, 651
RsaNI	GTAC	2 cut(s)	268, 650
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	6 cut(s)	264, 336, 612, 656, 753, 1134
SatI	GCNGC	5 cut(s)	35, 149, 235, 876, 879
Sau3AI	GATC	4 cut(s)	596, 804, 861, 902
Sau96I	GGNCC	1 cut(s)	693
ScrFI	CCNGG	2 cut(s)	883, 921
SfaNI	GCATC	4 cut(s)	501, 670, 940, 1065
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	477, 655
SmoI	CTYRAG	2 cut(s)	477, 655
SphI	GCATGC	1 cut(s)	712
Sse9I	AATT	6 cut(s)	92, 192, 290, 584, 601, 702
SseBI	AGGCCT	1 cut(s)	1147
SsiI	CCGC	6 cut(s)	146, 624, 879, 929, 1087, 1138
SspI	AATATT	2 cut(s)	205, 1153
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	1147
StyD4I	CCNGG	2 cut(s)	881, 919
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	8 cut(s)	111, 186, 196, 208, 529, 837, 1106, 1114
TasI	AATT	6 cut(s)	92, 192, 290, 584, 601, 702
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	7 cut(s)	341, 580, 797, 828, 854, 951, 1116
Tru1I	TTAA	6 cut(s)	264, 336, 612, 656, 753, 1134
Tru9I	TTAA	6 cut(s)	264, 336, 612, 656, 753, 1134
TscAI	CASTG	1 cut(s)	807
TseI	GCWGC	4 cut(s)	34, 148, 234, 875
TspDTI	ATGAA	4 cut(s)	302, 593, 823, 1057
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	1 cut(s)	807
Vha464I	CTTAAG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	693
XapI	RAATTY	3 cut(s)	192, 290, 702
XceI	RCATGY	1 cut(s)	712
XspI	CTAG	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.