RLG00000000398

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002160
Physical Location & Seq
Forward (+)
817076 .. 817527
452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000398

Sequence Viewer

Length: 384 bp
ATGAAGATGCAGAGTCTGATGCGCCTCTCATCCCGTGAAGAAGAGGTGGGTTTCTGGGCGGGTCGGAGCTTCCTATCTCTCATTCGTTCGTTCCGGTCGCCTCATATCTCCTACCCGCGGTACCCGCCTCTTGGTGTCCAATACCCAGTGATGGGAGAAGGAGTGGGAGACGAAGAGAGGGAAGATGGTTGCTTAGCAGCGGAAGCTGGGGATCGAGAAGCGGGGGGAGCGCTTAGGCTTGAAATGGAGCTAGGATACCGGTATTTTTACCTCCCTGGATCCGAGTCTTTCTCTTCCCCTGGACCGAGCACCGAGACCGAGAAAAGAGAGGCTGGATACGAGTCTGATGAGATCAGAGCCAGTGAAGAGAAGAGGGAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

4.78

Isoelectric Point (pI)

73.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 120
AccII CGCG 1 cut(s) 118
AciI CCGC 6 cut(s) 59, 116, 118, 125, 200, 221
AclWI GGATC 3 cut(s) 219, 273, 286
AfaI GTAC 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 231
AfiI CCNNNNNNNGG 4 cut(s) 117, 131, 151, 152
AgeI ACCGGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 2 cut(s) 274, 298
AluBI AGCT 3 cut(s) 69, 206, 250
AluI AGCT 3 cut(s) 69, 206, 250
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 162, 308
AlwI GGATC 3 cut(s) 219, 273, 286
AlwNI CAGNNNCTG 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 258
Asp718I GGTACC 1 cut(s) 120
AspLEI GCGC 2 cut(s) 24, 232
AspS9I GGNCC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 302
BamHI GGATCC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 209
BccI CCATC 2 cut(s) 145, 179
BciT130I CCWGG 2 cut(s) 276, 300
BciVI GTATCC 2 cut(s) 248, 329
BcoDI GTCTC 2 cut(s) 162, 308
BfaI CTAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 233
BfuI GTATCC 2 cut(s) 248, 329
BisI GCNGC 1 cut(s) 198
BlpI GCTNAGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 276, 300
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 122, 280
BmrFI CCNGG 2 cut(s) 276, 300
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 140
BplI GAGNNNNNCTC 2 cut(s) 275, 307
Bpu10I CCTNAGC 1 cut(s) 233
Bpu1102I GCTNAGC 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 116, 274, 298
BsaWI WCCGGW 2 cut(s) 93, 258
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 131, 151, 152
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 146, 360
BseBI CCWGG 2 cut(s) 276, 300
BseDI CCNNGG 3 cut(s) 116, 274, 298
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 4 cut(s) 117, 131, 151, 152
BseNI ACTGG 2 cut(s) 146, 360
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 118
Bsh1285I CGRYCG 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 120
BshTI ACCGGT 1 cut(s) 258
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 2 cut(s) 94, 259
BslI CCNNNNNNNGG 4 cut(s) 117, 131, 151, 152
BsmAI GTCTC 2 cut(s) 162, 308
BsmBI CGTCTC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 3 cut(s) 211, 278, 351
Bsp1720I GCTNAGC 1 cut(s) 193
BspACI CCGC 6 cut(s) 59, 116, 118, 125, 200, 221
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 122, 280
BspPI GGATC 3 cut(s) 219, 273, 286
BspT107I GGYRCC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 2 cut(s) 146, 360
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 3 cut(s) 116, 274, 298
BssMI GATC 3 cut(s) 211, 278, 351
Bst2UI CCWGG 2 cut(s) 276, 300
Bst6I CTCTTC 5 cut(s) 36, 168, 298, 360, 365
BstDEI CTNAG 2 cut(s) 193, 233
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 24, 232
BstKTI GATC 3 cut(s) 214, 281, 354
BstMAI GTCTC 2 cut(s) 162, 308
BstMBI GATC 3 cut(s) 211, 278, 351
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 124, 203, 227
BstNI CCWGG 2 cut(s) 276, 300
BstSCI CCNGG 2 cut(s) 274, 298
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BsuI GTATCC 2 cut(s) 248, 329
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 153, 367
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 24, 232
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 302
Cfr42I CCGCGG 1 cut(s) 119
Csp6I GTAC 1 cut(s) 121
CspAI ACCGGT 1 cut(s) 258
CviJI RGCY 7 cut(s) 69, 206, 238, 250, 332, 359, 381
CviKI_1 RGCY 7 cut(s) 69, 206, 238, 250, 332, 359, 381
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 193, 233
DpnI GATC 3 cut(s) 213, 280, 353
DpnII GATC 3 cut(s) 211, 278, 351
Eam1104I CTCTTC 5 cut(s) 36, 168, 298, 360, 365
EarI CTCTTC 5 cut(s) 36, 168, 298, 360, 365
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 302
Eco47III AGCGCT 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 274, 298
Esp3I CGTCTC 1 cut(s) 162
FaiI YATR 1 cut(s) 105
FauI CCCGC 4 cut(s) 52, 123, 132, 214
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 23, 231
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 233
HapII CCGG 2 cut(s) 94, 259
HhaI GCGC 2 cut(s) 24, 232
Hin6I GCGC 2 cut(s) 22, 230
HinP1I GCGC 2 cut(s) 22, 230
HinfI GANTC 3 cut(s) 13, 284, 341
HpaII CCGG 2 cut(s) 94, 259
Hpy188I TCNGA 5 cut(s) 18, 66, 283, 346, 356
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 152, 371
HpyCH4V TGCA 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 203, 227
HpyF3I CTNAG 2 cut(s) 193, 233
HspAI GCGC 2 cut(s) 22, 230
KpnI GGTACC 1 cut(s) 124
KspI CCGCGG 1 cut(s) 119
Kzo9I GATC 3 cut(s) 211, 278, 351
LmnI GCTCC 3 cut(s) 66, 227, 247
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 9
MaeI CTAG 1 cut(s) 251
MalI GATC 3 cut(s) 213, 280, 353
MboI GATC 3 cut(s) 211, 278, 351
MboII GAAGA 8 cut(s) 16, 50, 53, 185, 194, 285, 377, 382
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 311
MlyI GAGTC 3 cut(s) 22, 293, 350
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 8 cut(s) 35, 37, 111, 138, 171, 281, 322, 366
MspA1I CMGCKG 2 cut(s) 118, 200
MspI CCGG 2 cut(s) 94, 259
MspR9I CCNGG 2 cut(s) 276, 300
MvaI CCWGG 2 cut(s) 276, 300
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 124, 203, 227
NdeII GATC 3 cut(s) 211, 278, 351
NlaIV GGNNCC 2 cut(s) 122, 280
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 3 cut(s) 21, 292, 349
PpsI GAGTC 3 cut(s) 21, 292, 349
Psp6I CCWGG 2 cut(s) 274, 298
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 2 cut(s) 274, 298
PspN4I GGNNCC 2 cut(s) 122, 280
PspPI GGNCC 1 cut(s) 302
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SacII CCGCGG 1 cut(s) 119
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 211, 278, 351
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 3 cut(s) 22, 293, 350
ScrFI CCNGG 2 cut(s) 276, 300
SduI GDGCHC 1 cut(s) 311
SetI ASST 5 cut(s) 48, 71, 208, 252, 273
SfaNI GCATC 1 cut(s) 9
Sfr303I CCGCGG 1 cut(s) 119
SgrBI CCGCGG 1 cut(s) 119
SinI GGWCC 1 cut(s) 302
SsiI CCGC 6 cut(s) 59, 116, 118, 125, 200, 221
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 274, 298
TaqI TCGA 1 cut(s) 214
TaqII GACCGA 2 cut(s) 319, 332
TscAI CASTG 2 cut(s) 153, 367
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 153, 367
VpaK11BI GGWCC 1 cut(s) 302
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.