Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

38223633 .. 38227670

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG306900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGAGAAATCTGAGGGTGCAACAGTCTCTACTTGTTGTTCGTAAGCTGCTTCCTGGATCCAGACCCCTAGCCCTAATCCCAACCTCCCAATCATCTCCACTTGCTGTTCAAAAGAAATCATCTCCACTTGCTCTTCAAATTTACAGACCCTTGTCCACTATTTCAGGTCATGTCGCACATGATGAAGCATCGGTACCTGTTGATTCTCTAATTCGCTTTTTACCCTTAACCTCGAGCTACACTGCTCAATATGATTACATACTGAAGGCAATCCGAGATGACTGTTTGAATGTGGTCTGCTGCTTCTATGCGGGGAGCCCACCTATGCACTTACCTCTAATCGTTCAAGCTTTCGTGGAGAGATTCCCACATGTAAAAATATATCATTTTCTCATTTTTACTCTGCGTCAGAATAATGACACTTATGAGGCTGCTATGAGAATGTTGAATGTTACCAGAACACCGTTGTTCCATTTCTTTCGAAATGGTAAAAAGGTTGATCAGCTAGTTGGTGAATCCATCGTGCTCTTGGACAAGACTCTTAAAAACCTTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

187

Amino Acids

21.24

Weight (kDa)

9.74

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	2 cut(s)	54, 67
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	5 cut(s)	113, 140, 292, 350, 451
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	49, 240, 353, 508
AluI	AGCT	4 cut(s)	49, 240, 353, 508
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	54, 67
Ama87I	CYCGRG	1 cut(s)	235
ApeKI	GCWGC	3 cut(s)	49, 303, 434
ApoI	RAATTY	1 cut(s)	141
Asp718I	GGTACC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	527
AsuII	TTCGAA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	235
BamHI	GGATCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	323
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	36, 290, 421
BccI	CCATC	1 cut(s)	530
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	71, 509
BisI	GCNGC	3 cut(s)	50, 304, 435
BlsI	GCNGC	3 cut(s)	51, 305, 436
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	235
BmiI	GGNNCC	3 cut(s)	61, 198, 320
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	200
BoxI	GACNNNNGTC	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	5
BseXI	GCAGC	3 cut(s)	36, 290, 421
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	323, 531
Bsp143I	GATC	2 cut(s)	59, 502
BspACI	CCGC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	61, 198, 320
BspPI	GGATC	2 cut(s)	54, 67
BspQI	GCTCTTC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	484
BspT107I	GGYRCC	1 cut(s)	196
BssMI	GATC	2 cut(s)	59, 502
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	3 cut(s)	27, 287, 468
Bst6I	CTCTTC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	62, 505
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	59, 502
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	377
BstPAI	GACNNNNGTC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	3 cut(s)	36, 290, 421
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	3 cut(s)	173, 182, 374
CviJI	RGCY	7 cut(s)	49, 74, 240, 321, 353, 434, 508
CviKI_1	RGCY	7 cut(s)	49, 74, 240, 321, 353, 434, 508
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	61, 504
DpnII	GATC	2 cut(s)	59, 502
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	3 cut(s)	176, 185, 377
FatI	CATG	3 cut(s)	172, 181, 373
FauI	CCCGC	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	50, 304, 435
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	50, 304, 435
FspBI	CTAG	2 cut(s)	71, 509
GluI	GCNGC	3 cut(s)	50, 304, 435
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	3 cut(s)	176, 185, 377
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	4 cut(s)	206, 366, 518, 541
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	3 cut(s)	15, 278, 414
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	3 cut(s)	27, 287, 468
HpyCH4V	TGCA	2 cut(s)	22, 331
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	176, 185, 377
KpnI	GGTACC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	59, 502
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	6 cut(s)	42, 69, 76, 153, 213, 472
Lsp1109I	GCAGC	3 cut(s)	36, 290, 421
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	71, 509
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	2 cut(s)	61, 504
MboI	GATC	2 cut(s)	59, 502
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	2 cut(s)	323, 531
MluCI	AATT	2 cut(s)	141, 213
MlyI	GAGTC	1 cut(s)	535
MnlI	CCTC	5 cut(s)	9, 97, 244, 348, 424
MseI	TTAA	2 cut(s)	230, 546
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	59, 502
NlaIII	CATG	3 cut(s)	176, 185, 377
NlaIV	GGNNCC	3 cut(s)	61, 198, 320
NspI	RCATGY	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	235
PciI	ACATGT	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	206, 366, 518
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	51, 305, 436
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PscI	ACATGT	1 cut(s)	373
PshAI	GACNNNNGTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	3 cut(s)	61, 198, 320
PspXI	VCTCGAGB	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	230, 546
SatI	GCNGC	3 cut(s)	50, 304, 435
Sau3AI	GATC	2 cut(s)	59, 502
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	323, 531
SfaNI	GCATC	1 cut(s)	200
Sfr274I	CTCGAG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	484
SlaI	CTCGAG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	141, 213
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	2 cut(s)	71, 509
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	3 cut(s)	27, 287, 468
TaqI	TCGA	2 cut(s)	236, 484
TasI	AATT	2 cut(s)	141, 213
TfiI	GAWTC	3 cut(s)	206, 366, 518
Tru1I	TTAA	2 cut(s)	230, 546
Tru9I	TTAA	2 cut(s)	230, 546
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	3 cut(s)	49, 303, 434
TspDTI	ATGAA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	235
XspI	CTAG	2 cut(s)	71, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.