Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

68108092 .. 68111351

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG463200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGAACGTTGAACATTTCAAGTCTGCCAATGTATCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTATATCAAACGCTTCAAGACAGTTCTTGAAAAACTTTACAACCCTCAAGAAGTTGGCACAAAAGCCAAGGAAAATGTGATGCATGAAGGCGTAGTTCGAAGACGGAACGAGGAGGAAAGAAAAAAGCCTATGATGAGCATTTATATGAATCAATTATTTCCAAGATCTAATTCCAGTTTTAAGTTATCTAGTGGGAATGCCTTAGAAGCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCCTGGTAGATGCAGGACTTGGGACCCCCAGAATTTGCATGCAAGATGAGACTACAGGAGTGCCAAACCGAGCCATCAGGTTTAAGACTAAGGTGGGATACATTTCTAAGGGGGGAGTGGCCGGTGAATCAGTGATCAAAGAGCAGATGTTGGAGAGATTCTTCATCGATGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCAGCCGCCAGGTTTCAGTCTTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCATCTTCTTCTTCCACGAAGATTCAGACAGAGGCGAGCTTGGATGGAACTGAACAAGATTTGGCGAAGGAATAGAAAGGTAAAGGGCTTTATTCTTCAGAAAGTCAAGGGAGGTTATTTAGTAGGCATCGGGGGTTTCATTACTTTTCTTCCAATCCGCCGAAAAATAGCGATATCGAATGGTCGATTCACCATTGAGAGCATTAACCGCAAAAGGCCTAATATTGTTGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

31.14

Weight (kDa)

10.33

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	528, 578, 736, 787
AclI	AACGTT	1 cut(s)	8
AclWI	GGATC	2 cut(s)	546, 559
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	2 cut(s)	312, 659
AfaI	GTAC	1 cut(s)	300
AflII	CTTAAG	1 cut(s)	304
AgsI	TTSAA	4 cut(s)	13, 21, 97, 110
AjnI	CCWGG	2 cut(s)	321, 530
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	70, 74, 290, 617
AluI	AGCT	4 cut(s)	70, 74, 290, 617
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	546, 559
AoxI	GGCC	2 cut(s)	438, 794
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	342
AsuHPI	GGTGA	5 cut(s)	89, 455, 512, 584, 760
AsuII	TTCGAA	1 cut(s)	178
AsuNHI	GCTAGC	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	342
BamHI	GGATCC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	2 cut(s)	401, 616
BciT130I	CCWGG	2 cut(s)	323, 532
BciVI	GTATCC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	71, 270
BfmI	CTRYAG	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	410
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	2 cut(s)	525, 528
BlsI	GCNGC	2 cut(s)	526, 529
Bme1390I	CCNGG	2 cut(s)	323, 532
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	3 cut(s)	343, 344, 553
BmrFI	CCNGG	2 cut(s)	323, 532
BmsI	GCATC	4 cut(s)	150, 319, 589, 714
BmtI	GCTAGC	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	187
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	111
Bsa29I	ATCGAT	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	323, 532
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	80, 206
BseXI	GCAGC	1 cut(s)	536
BshFI	GGCC	2 cut(s)	440, 796
BshVI	ATCGAT	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	440, 796
Bsp119I	TTCGAA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	245, 453, 510, 551
BspACI	CCGC	4 cut(s)	528, 578, 736, 787
BspANI	GGCC	2 cut(s)	440, 796
BspDI	ATCGAT	1 cut(s)	486
BspLI	GGNNCC	3 cut(s)	343, 344, 553
BspOI	GCTAGC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	546, 559
BspT104I	TTCGAA	1 cut(s)	178
BspTI	CTTAAG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	4 cut(s)	245, 453, 510, 551
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	323, 532
Bst4CI	ACNGT	1 cut(s)	103
BstAFI	CTTAAG	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	4 cut(s)	72, 359, 522, 615
BstDEI	CTNAG	3 cut(s)	283, 408, 426
BstF5I	GGATG	1 cut(s)	627
BstKTI	GATC	4 cut(s)	248, 456, 513, 554
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	4 cut(s)	245, 453, 510, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 786
BstNI	CCWGG	2 cut(s)	323, 532
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	2 cut(s)	321, 530
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	536
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	2 cut(s)	245, 551
BstYI	RGATCY	2 cut(s)	245, 551
Bsu15I	ATCGAT	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	440, 796
BsuTUI	ATCGAT	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	4 cut(s)	72, 359, 522, 615
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	342
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	2 cut(s)	164, 358
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	3 cut(s)	283, 408, 426
DpnI	GATC	4 cut(s)	247, 455, 512, 553
DpnII	GATC	4 cut(s)	245, 453, 510, 551
EaeI	YGGCCR	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	725
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	796
Eco32I	GATATC	1 cut(s)	753
Eco47I	GGWCC	1 cut(s)	342
Eco57I	CTGAAG	2 cut(s)	312, 659
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	321, 530
EcoRV	GATATC	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	167, 361
FaiI	YATR	6 cut(s)	84, 165, 212, 225, 227, 359
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	2 cut(s)	163, 357
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	525, 528
FokI	GGATG	1 cut(s)	634
Fsp4HI	GCNGC	2 cut(s)	525, 528
FspBI	CTAG	2 cut(s)	71, 270
GluI	GCNGC	2 cut(s)	525, 528
HaeIII	GGCC	2 cut(s)	440, 796
HapII	CCGG	1 cut(s)	441
Hin1II	CATG	2 cut(s)	167, 361
HinfI	GANTC	6 cut(s)	229, 446, 477, 503, 600, 765
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	5 cut(s)	89, 455, 512, 584, 760
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	2 cut(s)	605, 678
Hpy188III	TCNNGA	3 cut(s)	97, 107, 128
Hpy8I	GTNNAC	1 cut(s)	575
HpyAV	CCTTC	2 cut(s)	161, 639
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	163, 332, 357, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 786
HpyF3I	CTNAG	3 cut(s)	283, 408, 426
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	167, 361
KflI	GGGWCCC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	245, 453, 510, 551
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	4 cut(s)	150, 319, 589, 714
MaeI	CTAG	2 cut(s)	71, 270
MaeII	ACGT	1 cut(s)	8
MalI	GATC	4 cut(s)	247, 455, 512, 553
MboI	GATC	4 cut(s)	245, 453, 510, 551
MboII	GAAGA	9 cut(s)	192, 323, 472, 575, 578, 581, 609, 665, 719
MflI	RGATCY	2 cut(s)	245, 551
MluCI	AATT	3 cut(s)	233, 250, 351
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	6 cut(s)	58, 135, 184, 187, 603, 683
Mph1103I	ATGCAT	1 cut(s)	165
MseI	TTAA	4 cut(s)	261, 305, 402, 783
MslI	CAYNNNNRTG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	323, 532
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	2 cut(s)	323, 532
MwoI	GCNNNNNNNGC	2 cut(s)	287, 786
NdeII	GATC	4 cut(s)	245, 453, 510, 551
NheI	GCTAGC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	167, 361
NlaIV	GGNNCC	3 cut(s)	343, 344, 553
NsiI	ATGCAT	1 cut(s)	165
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	796
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	6 cut(s)	229, 446, 477, 503, 600, 765
PkrI	GCNGC	2 cut(s)	526, 529
PpuMI	RGGWCCY	1 cut(s)	342
Psp1406I	AACGTT	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	321, 530
PspGI	CCWGG	2 cut(s)	321, 530
PspN4I	GGNNCC	3 cut(s)	343, 344, 553
PspPI	GGNCC	1 cut(s)	342
PspPPI	RGGWCCY	1 cut(s)	342
PsuI	RGATCY	2 cut(s)	245, 551
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	261, 305, 402, 783
SatI	GCNGC	2 cut(s)	525, 528
Sau3AI	GATC	4 cut(s)	245, 453, 510, 551
Sau96I	GGNCC	1 cut(s)	342
ScrFI	CCNGG	2 cut(s)	323, 532
SfaNI	GCATC	4 cut(s)	150, 319, 589, 714
SfcI	CTRYAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	178
SinI	GGWCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	126, 304
SmoI	CTYRAG	2 cut(s)	126, 304
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	3 cut(s)	233, 250, 351
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	4 cut(s)	528, 578, 736, 787
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	2 cut(s)	71, 270
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	2 cut(s)	321, 530
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	4 cut(s)	178, 486, 755, 763
TasI	AATT	3 cut(s)	233, 250, 351
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	6 cut(s)	229, 446, 477, 503, 600, 765
Tru1I	TTAA	4 cut(s)	261, 305, 402, 783
Tru9I	TTAA	4 cut(s)	261, 305, 402, 783
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	4 cut(s)	180, 242, 472, 706
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	456
Vha464I	CTTAAG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	351
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XspI	CTAG	2 cut(s)	71, 270
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.