Rh3DG347200

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014849
Physical Location & Seq
Forward (+)
39472030 .. 39518726
46697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG347200.1

Sequence Viewer

Length: 996 bp
ATGAGAGTCTTCGGAGTTGAGTTGATTCTCACTGACCCTACAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACTCTCTGGAATCCACTCCAAATGCTCTTATCCTCCAACAATTCTCAAACCCTGCCAATACTCAGAGGCCGACGAAACAAGAGATGATGAATTCCAGGGGTTTGTTTGTTGCTCTTATTCATCACCATCGTAAGCTTTCGACGTCCAATTTCTTTGCTGCCCCAAGCCATCATTATCATTTTCTGCAACACCGCCTTCTCCACTCATCACCATCCCCAAACCTACTCGTTAAAGCCTTCACGGTAAAGGAAGATTATGATTTGGAAGTTAAAAGAGTTCAAGATCAATCGTTGCCAGCAATTTTCTGCGTCACTACATACTCTGAGCCCTTGTGTTTTTATGTAGCTAGACACCTTAGGAACATGAATCACCGATTCCCAAATGTAGCAATATCTGAATTCGTTCTTGATGCTAAGCCAAGCTTCCATTTTTTTAAGAATGGAAAAAAGGTAAATAAGGTAGGTCTTAAGAGGCTCAGAACGGATGCTGAGGCTTATGTCGAATGCTTGAAAAGGATTGTTGAACAACTCTATAACTTTCAACCTACAAAGAGTTCATCTAGCAGGAAGAACAAGAGAACAACTGAAGGAAGTGATGTAGAACATCCTAAAAAAGTTTCAGGTTTTGCAAGCTGTGAGCTCATTCTATCAAGGGAGGAATATAATTTGGCTGTTAACAGAATTCAAGATGAATCTGTGCCAGCAGTTTTTTGCTTCGCTACCTATTCTGAGTTCTCCAGTACCTTGGTATATGAGTTTCTTCACGAGGATTTGAGTGAGCGATTCCCACATGTAGCAATCTACGAGTTCCTCCTTGATCCTAAGGAAGACGACTACGAAACAACACTGAAAAGTCTAAATATTTCCTCTACGGTCAATGCGGTGAAAGAAGACCAAGGAGTTTGTCAACACCTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

331

Amino Acids

37.87

Weight (kDa)

8.13

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 221
AciI CCGC 2 cut(s) 268, 956
AclWI GGATC 1 cut(s) 887
AcsI RAATTY 3 cut(s) 166, 473, 756
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 1 cut(s) 817
AfiI CCNNNNNNNGG 1 cut(s) 44
AflII CTTAAG 1 cut(s) 542
AflIII ACRYGT 1 cut(s) 865
AgsI TTSAA 5 cut(s) 356, 586, 599, 617, 761
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 5 cut(s) 211, 422, 498, 708, 715
AluI AGCT 5 cut(s) 211, 422, 498, 708, 715
Alw21I GWGCWC 1 cut(s) 717
AlwI GGATC 1 cut(s) 887
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 3 cut(s) 166, 473, 756
Asp700I GAANNNNTTC 1 cut(s) 477
AsuHPI GGTGA 4 cut(s) 191, 276, 437, 970
AxyI CCTNAGG 2 cut(s) 431, 897
BanII GRGCYC 2 cut(s) 405, 717
BauI CACGAG 1 cut(s) 839
BbsI GAAGAC 2 cut(s) 909, 972
Bbv12I GWGCWC 1 cut(s) 717
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 220
BccI CCATC 4 cut(s) 43, 210, 252, 295
BciT130I CCWGG 1 cut(s) 172
BfaI CTAG 2 cut(s) 423, 636
BfrI CTTAAG 1 cut(s) 542
BisI GCNGC 1 cut(s) 234
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 2 cut(s) 475, 550
BpiI GAAGAC 2 cut(s) 909, 972
BpmI CTGGAG 1 cut(s) 796
Bpu10I CCTNAGC 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 489
BsaHI GRCGYC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 171, 819, 970
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 813
Bse21I CCTNAGG 2 cut(s) 431, 897
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 3 cut(s) 171, 819, 970
BseGI GGATG 4 cut(s) 54, 287, 565, 679
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 6 cut(s) 152, 390, 555, 565, 795, 980
BseNI ACTGG 1 cut(s) 813
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 717
BslI CCNNNNNNNGG 1 cut(s) 44
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 405, 717
Bsp143I GATC 2 cut(s) 358, 892
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 2 cut(s) 268, 956
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 6 cut(s) 151, 391, 556, 564, 796, 981
BspPI GGATC 1 cut(s) 887
BspTI CTTAAG 1 cut(s) 542
BsrI ACTGG 1 cut(s) 813
BssECI CCNNGG 3 cut(s) 171, 819, 970
BssMI GATC 2 cut(s) 358, 892
BssNI GRCGYC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 839
BssT1I CCWWGG 2 cut(s) 819, 970
Bst2BI CACGAG 1 cut(s) 839
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 3 cut(s) 61, 319, 949
BstACI GRCGYC 1 cut(s) 218
BstAFI CTTAAG 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 372, 706, 777
BstDEI CTNAG 9 cut(s) 138, 399, 431, 489, 551, 564, 804, 897, 989
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 4 cut(s) 54, 287, 565, 679
BstKTI GATC 2 cut(s) 361, 895
BstMBI GATC 2 cut(s) 358, 892
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 2 cut(s) 909, 972
BstXI CCANNNNNNTGG 1 cut(s) 820
Bsu36I CCTNAGG 2 cut(s) 431, 897
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 4 cut(s) 54, 287, 565, 679
BtsIMutI CAGTG 2 cut(s) 30, 920
Cac8I GCNNGC 3 cut(s) 372, 706, 777
CseI GACGC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 816
CviAII CATG 2 cut(s) 439, 866
CviQI GTAC 1 cut(s) 816
DdeI CTNAG 9 cut(s) 138, 399, 431, 489, 551, 564, 804, 897, 989
DpnI GATC 2 cut(s) 360, 894
DpnII GATC 2 cut(s) 358, 892
Ecl136II GAGCTC 1 cut(s) 715
Eco130I CCWWGG 2 cut(s) 819, 970
Eco24I GRGCYC 2 cut(s) 405, 717
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 681
Eco81I CCTNAGG 2 cut(s) 431, 897
EcoICRI GAGCTC 1 cut(s) 715
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoRI GAATTC 3 cut(s) 166, 473, 756
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 819, 970
EcoT38I GRGCYC 2 cut(s) 405, 717
ErhI CCWWGG 2 cut(s) 819, 970
FaeI CATG 2 cut(s) 442, 869
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 2 cut(s) 438, 865
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 4 cut(s) 61, 274, 572, 666
FriOI GRGCYC 2 cut(s) 405, 717
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 2 cut(s) 423, 636
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 796
HaeIII GGCC 1 cut(s) 145
HgaI GACGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 2 cut(s) 442, 869
HincII GTYRAC 2 cut(s) 751, 983
HindII GTYRAC 2 cut(s) 751, 983
HindIII AAGCTT 2 cut(s) 209, 496
HinfI GANTC 8 cut(s) 6, 25, 77, 86, 442, 450, 767, 858
HpaI GTTAAC 1 cut(s) 751
HphI GGTGA 4 cut(s) 191, 276, 437, 970
Hpy166II GTNNAC 2 cut(s) 751, 983
Hpy188I TCNGA 6 cut(s) 14, 141, 400, 472, 554, 805
Hpy188III TCNNGA 6 cut(s) 64, 83, 356, 482, 761, 839
Hpy8I GTNNAC 2 cut(s) 751, 983
Hpy99I CGWCG 2 cut(s) 151, 220
HpyAV CCTTC 4 cut(s) 61, 281, 322, 656
HpyCH4III ACNGT 3 cut(s) 61, 319, 949
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 262, 704
HpyF3I CTNAG 9 cut(s) 138, 399, 431, 489, 551, 564, 804, 897, 989
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 442, 869
KspAI GTTAAC 1 cut(s) 751
Kzo9I GATC 2 cut(s) 358, 892
LpnPI CCDG 9 cut(s) 68, 141, 157, 184, 384, 625, 681, 789, 826
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 475, 550
MaeI CTAG 2 cut(s) 423, 636
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 385
MalI GATC 2 cut(s) 360, 894
MboI GATC 2 cut(s) 358, 892
MboII GAAGA 5 cut(s) 338, 655, 827, 914, 977
MhlI GDGCHC 2 cut(s) 405, 717
MluCI AATT 7 cut(s) 116, 166, 223, 375, 473, 739, 756
MlyI GAGTC 2 cut(s) 15, 71
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 9 cut(s) 47, 119, 135, 540, 559, 724, 835, 896, 952
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 6 cut(s) 306, 345, 510, 543, 750, 994
MspCI CTTAAG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 1 cut(s) 172
NdeII GATC 2 cut(s) 358, 892
NlaIII CATG 2 cut(s) 442, 869
NmuCI GTSAC 1 cut(s) 385
NspI RCATGY 1 cut(s) 869
PciI ACATGT 1 cut(s) 865
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 6 cut(s) 25, 86, 442, 450, 767, 858
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 14, 71
PpsI GAGTC 2 cut(s) 14, 71
PscI ACATGT 1 cut(s) 865
Psp124BI GAGCTC 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
RsaI GTAC 1 cut(s) 817
RsaNI GTAC 1 cut(s) 816
SacI GAGCTC 1 cut(s) 717
SaqAI TTAA 6 cut(s) 306, 345, 510, 543, 750, 994
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 358, 892
SchI GAGTC 2 cut(s) 15, 71
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 2 cut(s) 405, 717
SfaNI GCATC 2 cut(s) 475, 550
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 7 cut(s) 116, 166, 223, 375, 473, 739, 756
SsiI CCGC 2 cut(s) 268, 956
SspI AATATT 1 cut(s) 937
SspMI CTAG 2 cut(s) 423, 636
SstI GAGCTC 1 cut(s) 717
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 2 cut(s) 819, 970
TaaI ACNGT 3 cut(s) 61, 319, 949
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 215, 576
TasI AATT 7 cut(s) 116, 166, 223, 375, 473, 739, 756
TfiI GAWTC 6 cut(s) 25, 86, 442, 450, 767, 858
Tru1I TTAA 6 cut(s) 306, 345, 510, 543, 750, 994
Tru9I TTAA 6 cut(s) 306, 345, 510, 543, 750, 994
TscAI CASTG 2 cut(s) 37, 927
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 5 cut(s) 179, 185, 455, 621, 780
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 2 cut(s) 37, 927
Vha464I CTTAAG 1 cut(s) 542
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 3 cut(s) 166, 473, 756
XceI RCATGY 1 cut(s) 869
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 2 cut(s) 423, 636
ZraI GACGTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.