Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014849

Physical Location & Seq

Genomic Coordinates Forward (+)

37633135 .. 37652093

Gene Structure 18959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGGTGGACACCCATCAAAAACCAACCAGTAAGGCTACCATCAGAAGAAAGCAACCCATCAAGGACCAAGATTCAGATACACCCAAAAGACAACCTACGGCCGACAACTATAAAAGCACACTGAAATCTCTTGGTATTTCCTATACGCCAAGCTTCCATTTTTTTAAGAATGGAAAAAAGGTAAATAAGGTAGGTCTTAAGAGGCTCAGAACAGATGCTGAGGCTTATGTCGAATGCTTGAAAAGGATTGTTGAACAACTCTATAACTTTCAACCTACAAAGAGTTCATCTAGCAGGGAGAACAAGAGAACTACTGAAGGAAGTGATGTAGAACGTCCTAAAAAAGTTTCAGGTTTTGCAAGCTGTGAGCTCATTCTATCAAAGGAGGAATATAATTTGGCTGTTAACAGAATTCAAGATGAATCTGTGCCAGCAGTTTTGTACTTCGCTACCTATTCTGAGTTCACCAGTACCATTGTATATGAGTTTCTTCACGAGGATTTGAGTGAGCGATTCCCACATGTAGCAATCTACGAGTTCCTCCTTGATCCTAAGGAAGAGGACTACGAAACAACACTGAAAAGTCTAAATATTTCCTCTATTGTCAATGCGGCGGCGGACAACGCTGAAGAGAAAGGCGGCGGCGTCGAGACCAATCATGGCGGTGGACGTAGTTGCGATTGTAGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

231

Amino Acids

26.05

Weight (kDa)

6.97

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492811
rosa_laevigata	RLG00000022744 RLG00000022745 RLG00000022746 RLG00000022748
rosa_multiflora	Rmu_sc0002343.1_g000012
rosa_roxburghii	Rroxscaffold_6G00392030
rosa_rugosa	Rorug03G0257500 Rorug03G0257600 Rorug03G0257600 Rorug03G0257900 Rorug03G0258100
rosa_samantha	Rh3AG306600 Rh3DG346700 Rh3DG347200
rosa_wichuraiana	Rw3G026990 Rw3G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	5, 614, 617, 620, 642, 645, 666
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	339, 651
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	2 cut(s)	446, 475
AflII	CTTAAG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	4 cut(s)	244, 257, 275, 419
AluBI	AGCT	3 cut(s)	156, 366, 373
AluI	AGCT	3 cut(s)	156, 366, 373
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	1 cut(s)	545
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	375
BauI	CACGAG	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	222
BccI	CCATC	3 cut(s)	24, 50, 68
BceAI	ACGGC	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	1 cut(s)	294
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	4 cut(s)	615, 618, 643, 646
BlsI	GCNGC	4 cut(s)	616, 619, 644, 647
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	30, 471
Bse21I	CCTNAGG	1 cut(s)	555
BseMII	CTCAG	3 cut(s)	213, 223, 453
BseNI	ACTGG	2 cut(s)	30, 471
BseX3I	CGGCCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	104
Bso31I	GGTCTC	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	7 cut(s)	5, 614, 617, 620, 642, 645, 666
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	3 cut(s)	214, 222, 454
BspPI	GGATC	1 cut(s)	545
BspTI	CTTAAG	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	647
BsrI	ACTGG	2 cut(s)	30, 471
BssMI	GATC	1 cut(s)	550
BssNI	GRCGYC	1 cut(s)	648
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst6I	CTCTTC	2 cut(s)	555, 627
BstACI	GRCGYC	1 cut(s)	648
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	364, 435
BstDEI	CTNAG	4 cut(s)	209, 222, 462, 555
BstKTI	GATC	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	1 cut(s)	550
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	527
BstZI	CGGCCG	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	122, 578
Cac8I	GCNNGC	2 cut(s)	364, 435
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	2 cut(s)	445, 474
CviAII	CATG	2 cut(s)	524, 662
CviJI	RGCY	9 cut(s)	38, 104, 156, 208, 227, 366, 373, 404, 693
CviKI_1	RGCY	9 cut(s)	38, 104, 156, 208, 227, 366, 373, 404, 693
CviQI	GTAC	2 cut(s)	445, 474
DdeI	CTNAG	4 cut(s)	209, 222, 462, 555
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	555, 627
EarI	CTCTTC	2 cut(s)	555, 627
EciI	GGCGGA	1 cut(s)	635
Ecl136II	GAGCTC	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	67
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	339, 651
Eco81I	CCTNAGG	1 cut(s)	555
EcoICRI	GAGCTC	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	2 cut(s)	527, 665
FaiI	YATR	9 cut(s)	114, 147, 231, 267, 396, 484, 486, 525, 663
FatI	CATG	2 cut(s)	523, 661
Fnu4HI	GCNGC	4 cut(s)	615, 618, 643, 646
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	615, 618, 643, 646
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	4 cut(s)	615, 618, 643, 646
HaeIII	GGCC	1 cut(s)	104
HgaI	GACGC	1 cut(s)	637
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	2 cut(s)	527, 665
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	3 cut(s)	74, 425, 516
HpaI	GTTAAC	1 cut(s)	409
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	4 cut(s)	10, 409, 468, 671
Hpy188I	TCNGA	4 cut(s)	47, 79, 212, 463
Hpy188III	TCNNGA	3 cut(s)	419, 497, 652
Hpy8I	GTNNAC	4 cut(s)	10, 409, 468, 671
Hpy99I	CGWCG	1 cut(s)	653
HpyAV	CCTTC	1 cut(s)	314
HpyCH4IV	ACGT	2 cut(s)	337, 673
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	4 cut(s)	209, 222, 462, 555
HpySE526I	ACGT	2 cut(s)	337, 673
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	2 cut(s)	527, 665
KspAI	GTTAAC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	550
LpnPI	CCDG	5 cut(s)	43, 283, 339, 447, 484
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	337, 673
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	4 cut(s)	60, 485, 572, 644
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	397, 414
MnlI	CCTC	8 cut(s)	198, 217, 382, 493, 554, 556, 610, 683
MseI	TTAA	3 cut(s)	168, 201, 408
MslI	CAYNNNNRTG	1 cut(s)	666
MspCI	CTTAAG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	626
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	2 cut(s)	527, 665
NspI	RCATGY	1 cut(s)	527
PciI	ACATGT	1 cut(s)	523
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	74, 425, 516
PkrI	GCNGC	4 cut(s)	616, 619, 644, 647
PscI	ACATGT	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	446, 475
RsaNI	GTAC	2 cut(s)	445, 474
RseI	CAYNNNNRTG	1 cut(s)	666
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	168, 201, 408
SatI	GCNGC	4 cut(s)	615, 618, 643, 646
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	397, 414
SsiI	CCGC	7 cut(s)	5, 614, 617, 620, 642, 645, 666
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	375
TaiI	ACGT	2 cut(s)	340, 676
TaqI	TCGA	2 cut(s)	234, 651
TasI	AATT	2 cut(s)	397, 414
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	4 cut(s)	617, 620, 645, 648
TfiI	GAWTC	3 cut(s)	74, 425, 516
Tru1I	TTAA	3 cut(s)	168, 201, 408
Tru9I	TTAA	3 cut(s)	168, 201, 408
TscAI	CASTG	2 cut(s)	129, 585
TspDTI	ATGAA	2 cut(s)	279, 438
TspRI	CASTG	2 cut(s)	129, 585
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	1 cut(s)	527
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.