Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014849

Physical Location & Seq

Genomic Coordinates Reverse (-)

11092107 .. 11107158

Gene Structure 15052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAATTCCAGGGGTTTGTTTGTTGCTCTTATTCATCACCATAGTAAGCTTTCGACGTCCAATTTCTTTGCCGCCGCAAGCCATTATTATCATTTTCTGCAACACCGCCTTCTCCACTCATCGCCATCCCCAAACCTTCTCGTTAAAGCCTTCGCGACAAAGGAAGATTATGATTTGGAAGTTAAAAGACTTCAAGATCAATCGTTGCCAGCAATTTTCTGCTTCACTACATACTCTGAGCCCTTGTGTTTTTATGTAGCTAGACAACTTAGGAATATGAATCAGCGATTCCCACATGTAGCAGTATCTGAATTCGTTCTTGATGCTAAGGCCGACAACTATAAAAGCACACTGAAATCTCTTGGTATTTCCTATATGCCAAGCTTCCATTTTTTTAAGAATGGAAAAAAGGTAAATAAGGTAGGTCTTAAGAGGCTCAGAACGGATGCTGAGGCTTATGTCGAATGCTTGAAAAGGATTGTTGAACAACTCTATAACTTTCAACCTACAAAGAGTTCATCTAGCAGGAAGAACAAGAGAACAACTGAAGGAAGTGATGTAGAACATCCTAAAAAAGTTTCAGGTTTTGCAAGCTGTGAGCTCATTCTATCAAGGGAGGAATATAATTTGGCTGTTAACAGAATTCAAGATTCTCGATTTATTCTTGGAGTACTCTTCTTCTGCAGCCAGTACCTTGGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

234

Amino Acids

26.95

Weight (kDa)

9.51

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492811
rosa_laevigata	RLG00000022744 RLG00000022745 RLG00000022746 RLG00000022748
rosa_multiflora	Rmu_sc0002343.1_g000012
rosa_roxburghii	Rroxscaffold_6G00392030
rosa_rugosa	Rorug03G0257500 Rorug03G0257600 Rorug03G0257600 Rorug03G0257900 Rorug03G0258100
rosa_samantha	Rh3AG306600 Rh3DG346700 Rh3DG347200
rosa_wichuraiana	Rw3G026990 Rw3G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccII	CGCG	1 cut(s)	155
AciI	CCGC	3 cut(s)	72, 75, 106
AcsI	RAATTY	3 cut(s)	4, 311, 642
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	672, 692
AflII	CTTAAG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	5 cut(s)	194, 472, 485, 503, 647
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	5 cut(s)	49, 260, 384, 594, 601
AluI	AGCT	5 cut(s)	49, 260, 384, 594, 601
Alw21I	GWGCWC	1 cut(s)	603
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	684
ApoI	RAATTY	3 cut(s)	4, 311, 642
Asp700I	GAANNNNTTC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	29
BanII	GRGCYC	2 cut(s)	243, 603
Bbv12I	GWGCWC	1 cut(s)	603
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	696
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	10
BfaI	CTAG	2 cut(s)	261, 522
BfmI	CTRYAG	1 cut(s)	682
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	3 cut(s)	72, 75, 685
BlsI	GCNGC	3 cut(s)	73, 76, 686
BmcAI	AGTACT	1 cut(s)	672
Bme1390I	CCNGG	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	313, 436
Bpu10I	CCTNAGC	2 cut(s)	327, 450
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	9, 694
Bse1I	ACTGG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	9, 694
BseGI	GGATG	3 cut(s)	125, 451, 565
BseMII	CTCAG	3 cut(s)	228, 441, 451
BseNI	ACTGG	1 cut(s)	688
BseXI	GCAGC	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	603
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	243, 603
Bsp143I	GATC	1 cut(s)	196
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	3 cut(s)	72, 75, 106
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	3 cut(s)	229, 442, 450
BspFNI	CGCG	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	9, 694
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	1 cut(s)	56
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	79, 210, 592
BstDEI	CTNAG	5 cut(s)	237, 269, 327, 437, 450
BstF5I	GGATG	3 cut(s)	125, 451, 565
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	682
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	696
BstXI	CCANNNNNNTGG	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	332
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	125, 451, 565
BtsIMutI	CAGTG	1 cut(s)	350
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	3 cut(s)	79, 210, 592
CaiI	CAGNNNCTG	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	671, 691
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	2 cut(s)	671, 691
DdeI	CTNAG	5 cut(s)	237, 269, 327, 437, 450
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	694
Eco24I	GRGCYC	2 cut(s)	243, 603
Eco53kI	GAGCTC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	601
EcoRI	GAATTC	3 cut(s)	4, 311, 642
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	694
EcoT38I	GRGCYC	2 cut(s)	243, 603
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	1 cut(s)	299
FatI	CATG	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	72, 75, 685
FokI	GGATG	3 cut(s)	112, 458, 552
FriOI	GRGCYC	2 cut(s)	243, 603
Fsp4HI	GCNGC	3 cut(s)	72, 75, 685
FspBI	CTAG	2 cut(s)	261, 522
GluI	GCNGC	3 cut(s)	72, 75, 685
HaeIII	GGCC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	2 cut(s)	47, 382
HinfI	GANTC	3 cut(s)	280, 288, 650
HpaI	GTTAAC	1 cut(s)	637
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	3 cut(s)	238, 310, 440
Hpy188III	TCNNGA	5 cut(s)	154, 194, 320, 647, 654
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	119, 146, 160, 542
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	100, 590, 684
HpyF3I	CTNAG	5 cut(s)	237, 269, 327, 437, 450
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	299
KspAI	GTTAAC	1 cut(s)	637
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	5 cut(s)	22, 222, 511, 567, 701
Lsp1109I	GCAGC	1 cut(s)	696
LweI	GCATC	2 cut(s)	313, 436
MaeI	CTAG	2 cut(s)	261, 522
MaeII	ACGT	1 cut(s)	56
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	176, 541, 667, 670
MhlI	GDGCHC	2 cut(s)	243, 603
MluCI	AATT	6 cut(s)	4, 61, 213, 311, 625, 642
MnlI	CCTC	3 cut(s)	426, 445, 610
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	5 cut(s)	144, 183, 396, 429, 636
MspCI	CTTAAG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	155
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	299
NruI	TCGCGA	1 cut(s)	155
NspI	RCATGY	1 cut(s)	299
PciI	ACATGT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	280, 288, 650
PkrI	GCNGC	3 cut(s)	73, 76, 686
PscI	ACATGT	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	308
RruI	TCGCGA	1 cut(s)	155
RsaI	GTAC	2 cut(s)	672, 692
RsaNI	GTAC	2 cut(s)	671, 691
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	5 cut(s)	144, 183, 396, 429, 636
SatI	GCNGC	3 cut(s)	72, 75, 685
Sau3AI	GATC	1 cut(s)	196
ScaI	AGTACT	1 cut(s)	672
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	243, 603
SfaNI	GCATC	2 cut(s)	313, 436
SfcI	CTRYAG	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	6 cut(s)	4, 61, 213, 311, 625, 642
SsiI	CCGC	3 cut(s)	72, 75, 106
SspMI	CTAG	2 cut(s)	261, 522
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	694
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	53, 462, 655
TasI	AATT	6 cut(s)	4, 61, 213, 311, 625, 642
TatI	WGTACW	1 cut(s)	670
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	3 cut(s)	280, 288, 650
Tru1I	TTAA	5 cut(s)	144, 183, 396, 429, 636
Tru9I	TTAA	5 cut(s)	144, 183, 396, 429, 636
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	1 cut(s)	684
TspDTI	ATGAA	4 cut(s)	17, 23, 293, 507
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	357
Vha464I	CTTAAG	1 cut(s)	428
XapI	RAATTY	3 cut(s)	4, 311, 642
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	2 cut(s)	261, 522
ZraI	GACGTC	1 cut(s)	57
ZrmI	AGTACT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.