Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014849

Physical Location & Seq

Genomic Coordinates Forward (+)

39351587 .. 39363015

Gene Structure 11429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG346700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGATGAATTCCAGGGGTTTGTTTGTTGCTCTTATTCATCACCATCGTAAGCTTTCGACGTCCAATTTCTTTGCCGCCCCAAACCATCATTATCATTTTCTGCAACACCGCCTTCTCCACTCATCACCATCCCCAAACCTACTCGTTAAAGCCTTCACGATAAAGGAAGATTATGATTTGGAAGTTAAAAGAGTTCAAGATCAATCGTTGCCAGCAATTTTCTGCGTCACTACATACTCTGAGCCCTTGTGTTTTGATGTAGCTAGACACCTTAGGAACATGAATCACCGATTCCCAAATGTAGCAATATCTGAATTCGTTCTTGATGCTAAGGCCGACAACTATAAAAGCACACTGAAATCTCTTGGTATTTCCTATACGCCAAGCTTCCATTTTTTTAAGAATGGAAAAAAGGTAAATAAGGTAGGTCTTAAGAGGCTCAGAACAGATGCTGAGGCTTATGTCGAATGCTTGAAAAGGATTGTTGAACAACTCTATAACTTTCAACCTACAAAGAGTTCATCTAGCAGGGAGAACAAGAGAACTACTGAAGGAAGTGATGTAGAACGTCCTAAAAAAGGTTTTGCAAGCTGTGAGCTCATTCTATCAAAGGAGGAATATAATTTGGCTGTTAACAGAATTCAAGATGAATCTGTGCCAGCAGTTTTGTACTTCGCTACCTATTCTGAGTTCACCAGTACCATTGTATATGAGTTTCTTCACGAGGATTTGAGTGAGCGATTCCCACATGTAGCAATCTACGAGTTCCTCCTTGATCCTAAGGAAGAGGACTACGAAACAACACTGAAAAGTCTAAATATTTCCTCTATTGTCAATGCGCCGATATTCCATTTCTTTAAAAATGGGCAAAAGGTGGATGAGCTAGCCTGTGAGATATTTGAATTTTATCAGTATGGCAGAGACTTGGAAAAGATTCTTGAGAAACTATACAACACTCAACCTGCAATAAGTTCATCTGGAACTGGGAGAAAAACTACTCAAGAATTACAACCTGTGAAAGATAAGGATAGCAAAGGAGTTAGAGGGCAGCGAGGGAGGAAAGTGAGGGATGCCGCAATGATTTCCAAACAGACACAGAGTGGGGGCAATCATCAGTTTGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

375

Amino Acids

43.16

Weight (kDa)

8.84

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492811
rosa_laevigata	RLG00000022744 RLG00000022745 RLG00000022746 RLG00000022748
rosa_multiflora	Rmu_sc0002343.1_g000012
rosa_roxburghii	Rroxscaffold_6G00392030
rosa_rugosa	Rorug03G0257500 Rorug03G0257600 Rorug03G0257600 Rorug03G0257900 Rorug03G0258100
rosa_samantha	Rh3AG306600 Rh3DG346700 Rh3DG347200
rosa_wichuraiana	Rw3G026990 Rw3G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	970
AciI	CCGC	3 cut(s)	75, 109, 1074
AclWI	GGATC	1 cut(s)	770
AcsI	RAATTY	4 cut(s)	7, 314, 639, 902
AcuI	CTGAAG	1 cut(s)	570
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	1100
AfaI	GTAC	2 cut(s)	671, 700
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	6 cut(s)	197, 475, 488, 506, 644, 902
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	6 cut(s)	52, 263, 387, 591, 598, 883
AluI	AGCT	6 cut(s)	52, 263, 387, 591, 598, 883
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	915
AlwI	GGATC	1 cut(s)	770
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	1048
ApoI	RAATTY	4 cut(s)	7, 314, 639, 902
Asp700I	GAANNNNTTC	2 cut(s)	318, 933
AspLEI	GCGC	1 cut(s)	841
AsuHPI	GGTGA	4 cut(s)	32, 117, 278, 685
AsuNHI	GCTAGC	1 cut(s)	883
AxyI	CCTNAGG	2 cut(s)	272, 780
BanII	GRGCYC	2 cut(s)	246, 600
BauI	CACGAG	1 cut(s)	722
Bbv12I	GWGCWC	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	1060
BccI	CCATC	3 cut(s)	51, 93, 136
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	915
BfaI	CTAG	3 cut(s)	264, 525, 884
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	970
BisI	GCNGC	3 cut(s)	75, 1049, 1074
BlsI	GCNGC	3 cut(s)	76, 1050, 1075
Bme1390I	CCNGG	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	993
BmsI	GCATC	3 cut(s)	316, 439, 1060
BmtI	GCTAGC	1 cut(s)	887
BmuI	ACTGGG	1 cut(s)	993
Bpu10I	CCTNAGC	2 cut(s)	330, 453
BpuEI	CTTGAG	2 cut(s)	959, 984
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	696, 988
Bse21I	CCTNAGG	2 cut(s)	272, 780
Bse3DI	GCAATG	1 cut(s)	1083
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	128, 883, 1075
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	1083
BseMII	CTCAG	4 cut(s)	231, 444, 454, 678
BseNI	ACTGG	2 cut(s)	696, 988
BseXI	GCAGC	1 cut(s)	1060
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	915
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	246, 600
Bsp143I	GATC	2 cut(s)	199, 775
BspACI	CCGC	3 cut(s)	75, 109, 1074
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	232, 445, 453, 679
BspMI	ACCTGC	1 cut(s)	970
BspOI	GCTAGC	1 cut(s)	887
BspPI	GGATC	1 cut(s)	770
BspTI	CTTAAG	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	1083
BsrI	ACTGG	2 cut(s)	696, 988
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	199, 775
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	722
Bst2BI	CACGAG	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	780
BstACI	GRCGYC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	213, 589, 660, 885
BstDEI	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 687, 780
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	128, 883, 1075
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	2 cut(s)	202, 778
BstMAI	GTCTC	1 cut(s)	915
BstMBI	GATC	2 cut(s)	199, 775
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	1060
Bsu36I	CCTNAGG	2 cut(s)	272, 780
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	128, 883, 1075
BtsIMutI	CAGTG	2 cut(s)	353, 803
BveI	ACCTGC	1 cut(s)	970
Cac8I	GCNNGC	4 cut(s)	213, 589, 660, 885
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	841
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	670, 699
CviAII	CATG	2 cut(s)	280, 749
CviQI	GTAC	2 cut(s)	670, 699
DdeI	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 687, 780
DpnI	GATC	2 cut(s)	201, 777
DpnII	GATC	2 cut(s)	199, 775
DraI	TTTAAA	1 cut(s)	859
DraIII	CACNNNGTG	1 cut(s)	1100
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	246, 600
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	570
Eco81I	CCTNAGG	2 cut(s)	272, 780
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRI	GAATTC	3 cut(s)	7, 314, 639
EcoRII	CCWGG	1 cut(s)	11
EcoT38I	GRGCYC	2 cut(s)	246, 600
FaeI	CATG	2 cut(s)	283, 752
FatI	CATG	2 cut(s)	279, 748
Fnu4HI	GCNGC	3 cut(s)	75, 1049, 1074
FokI	GGATG	3 cut(s)	115, 890, 1082
FriOI	GRGCYC	2 cut(s)	246, 600
Fsp4HI	GCNGC	3 cut(s)	75, 1049, 1074
FspBI	CTAG	3 cut(s)	264, 525, 884
GlaI	GCGC	1 cut(s)	840
GluI	GCNGC	3 cut(s)	75, 1049, 1074
HaeIII	GGCC	1 cut(s)	335
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	841
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	283, 752
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	2 cut(s)	50, 385
HinfI	GANTC	5 cut(s)	283, 291, 650, 741, 934
HpaI	GTTAAC	1 cut(s)	634
HphI	GGTGA	4 cut(s)	32, 117, 278, 685
Hpy166II	GTNNAC	2 cut(s)	634, 693
Hpy188I	TCNGA	4 cut(s)	241, 313, 443, 688
Hpy188III	TCNNGA	8 cut(s)	157, 197, 323, 644, 722, 938, 978, 1001
Hpy8I	GTNNAC	2 cut(s)	634, 693
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	122, 163, 545
HpyCH4IV	ACGT	2 cut(s)	59, 568
HpyCH4V	TGCA	3 cut(s)	103, 587, 965
HpyF3I	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 687, 780
HpySE526I	ACGT	2 cut(s)	59, 568
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	283, 752
HspAI	GCGC	1 cut(s)	839
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	199, 775
Lsp1109I	GCAGC	1 cut(s)	1060
LweI	GCATC	3 cut(s)	316, 439, 1060
MaeI	CTAG	3 cut(s)	264, 525, 884
MaeII	ACGT	2 cut(s)	59, 568
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	201, 777
MboI	GATC	2 cut(s)	199, 775
MboII	GAAGA	3 cut(s)	179, 710, 797
MhlI	GDGCHC	2 cut(s)	246, 600
MluCI	AATT	9 cut(s)	7, 64, 216, 314, 622, 639, 902, 1004, 1123
MroXI	GAANNNNTTC	2 cut(s)	318, 933
MseI	TTAA	7 cut(s)	147, 186, 399, 432, 633, 858, 1126
MspCI	CTTAAG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	199, 775
NheI	GCTAGC	1 cut(s)	883
NlaIII	CATG	2 cut(s)	283, 752
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	752
PciI	ACATGT	1 cut(s)	748
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	2 cut(s)	318, 933
PfeI	GAWTC	5 cut(s)	283, 291, 650, 741, 934
PkrI	GCNGC	3 cut(s)	76, 1050, 1075
PscI	ACATGT	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	671, 700
RsaNI	GTAC	2 cut(s)	670, 699
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	7 cut(s)	147, 186, 399, 432, 633, 858, 1126
SatI	GCNGC	3 cut(s)	75, 1049, 1074
Sau3AI	GATC	2 cut(s)	199, 775
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	246, 600
SfaNI	GCATC	3 cut(s)	316, 439, 1060
SmlI	CTYRAG	3 cut(s)	431, 938, 999
SmoI	CTYRAG	3 cut(s)	431, 938, 999
Sse9I	AATT	9 cut(s)	7, 64, 216, 314, 622, 639, 902, 1004, 1123
SsiI	CCGC	3 cut(s)	75, 109, 1074
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	3 cut(s)	264, 525, 884
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	11
TaiI	ACGT	2 cut(s)	62, 571
TaqI	TCGA	2 cut(s)	56, 465
TasI	AATT	9 cut(s)	7, 64, 216, 314, 622, 639, 902, 1004, 1123
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	2 cut(s)	77, 1076
TfiI	GAWTC	5 cut(s)	283, 291, 650, 741, 934
Tru1I	TTAA	7 cut(s)	147, 186, 399, 432, 633, 858, 1126
Tru9I	TTAA	7 cut(s)	147, 186, 399, 432, 633, 858, 1126
TscAI	CASTG	2 cut(s)	360, 810
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	1048
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	6 cut(s)	20, 26, 296, 510, 663, 963
TspRI	CASTG	2 cut(s)	360, 810
Vha464I	CTTAAG	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	4 cut(s)	7, 314, 639, 902
XceI	RCATGY	1 cut(s)	752
XmnI	GAANNNNTTC	2 cut(s)	318, 933
XspI	CTAG	3 cut(s)	264, 525, 884
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.