Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014849

Physical Location & Seq

Genomic Coordinates Forward (+)

37571294 .. 37579565

Gene Structure 8272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACCTTCCTTGGGTTGTTGACCCTGAACTGTCTCGATTATTCGGTGCGCCTTCATCGTCTCTGTCGGGTTCGGGTGCGGCCACGGCTGGATTCGGATATCATACCGGCCAACCACGATGCGACTGCTGGAGCTCCGGTTGAGCTGGAAACCCATCAAAAACCAACCAGTAAGGCTCACCATCAGAAGAAAGCAACCCATCAAGGACCAAGATTCAGATACACCCACATAAAGACAACCTACGGTAAGAGCCCAGCCAAGAGGCCAACGAAACAAGAGATGATGAATTCCAGGGGTTTGTTTGTTGCTCTTATTCATCACCATCGTAAGCTTTCGACGTCCAATTTCTTTGCCGCCCCAAACCATCATTATCATTTTCTGCAACACCGCCTTCTCCACTCATCACCATCCCCAAACCTACTCGTTAAAGCCTTCGCGACAAAGGAAGACTATGATTTGGAAGTTAAAAGAGTTCAAGATCAATCGTTGCCAGCAATTTTCTGCGTCACTACATACTCTGAGCCCTTGTGTTTTGATGTAGCTAGACACCTTAGGAACATGAATCACCGATTCCCAAATGTAGCAATATCTGAATTCGTTCTTGATGCTAAGGCCGACAACTATAAAAGCACACTGAAATCTCTTGGTATTTCCTATACGCCAAGCTTCCATTTTTTTAAGAATGGAAAAAAGGTAAATAAGGTAGGTCTTAAGAGGCTCAGAACGGATGCTGAGGCTTATGTCGAATGCTTGAAAAGGATTGTTGAACAACTCTATAACTTTCAACCTACAAAGAGTTCATCTAGCAGGGAGAACAAGAGAACTACTGAAGGAAGTGATGTAGAACGTCCTAAAAAAGGTGAAAATAGTAATATAGTTGTTGGAGGGTGGGAAGAGGAGCCAGTGCATAAAAGGAAGTGGAGAAGGTTTGGAAGTAGAAGCAATTGTTGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

318

Amino Acids

36.8

Weight (kDa)

9.95

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492811
rosa_laevigata	RLG00000022744 RLG00000022745 RLG00000022746 RLG00000022748
rosa_multiflora	Rmu_sc0002343.1_g000012
rosa_roxburghii	Rroxscaffold_6G00392030
rosa_rugosa	Rorug03G0257500 Rorug03G0257600 Rorug03G0257600 Rorug03G0257900 Rorug03G0258100
rosa_samantha	Rh3AG306600 Rh3DG346700 Rh3DG347200
rosa_wichuraiana	Rw3G026990 Rw3G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	341
AccII	CGCG	1 cut(s)	437
AciI	CCGC	3 cut(s)	79, 354, 388
AcoI	YGGCCR	2 cut(s)	80, 108
AcsI	RAATTY	2 cut(s)	286, 593
AcuI	CTGAAG	1 cut(s)	849
AcyI	GRCGYC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	12, 857
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	4 cut(s)	476, 754, 767, 785
AjnI	CCWGG	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	1 cut(s)	931
AluBI	AGCT	5 cut(s)	134, 145, 331, 542, 666
AluI	AGCT	5 cut(s)	134, 145, 331, 542, 666
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	38, 65
AoxI	GGCC	4 cut(s)	80, 108, 263, 612
ApoI	RAATTY	2 cut(s)	286, 593
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	5 cut(s)	170, 311, 396, 557, 872
AvaII	GGWCC	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	551
BanII	GRGCYC	3 cut(s)	136, 254, 525
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	136
BbvCI	CCTCAGC	1 cut(s)	732
BccI	CCATC	6 cut(s)	162, 189, 207, 330, 372, 415
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	38, 65
BfaI	CTAG	2 cut(s)	543, 804
BfrI	CTTAAG	1 cut(s)	710
BisI	GCNGC	2 cut(s)	80, 354
BlsI	GCNGC	2 cut(s)	81, 355
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	900
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	3 cut(s)	109, 595, 718
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	2 cut(s)	609, 732
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	3 cut(s)	10, 83, 291
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 857
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	168, 902
Bse21I	CCTNAGG	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	3 cut(s)	10, 83, 291
BseGI	GGATG	2 cut(s)	407, 733
BseLI	CCNNNNNNNGG	2 cut(s)	12, 857
BseMII	CTCAG	3 cut(s)	510, 723, 733
BseNI	ACTGG	2 cut(s)	168, 902
BseRI	GAGGAG	1 cut(s)	911
BseYI	CCCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	4 cut(s)	82, 110, 265, 614
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	107, 137
BslI	CCNNNNNNNGG	2 cut(s)	12, 857
BsmAI	GTCTC	2 cut(s)	38, 65
BsmBI	CGTCTC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	752
BsnI	GGCC	4 cut(s)	82, 110, 265, 614
Bsp1286I	GDGCHC	3 cut(s)	136, 254, 525
Bsp143I	GATC	1 cut(s)	478
Bsp68I	TCGCGA	1 cut(s)	437
BspACI	CCGC	3 cut(s)	79, 354, 388
BspANI	GGCC	4 cut(s)	82, 110, 265, 614
BspCNI	CTCAG	3 cut(s)	511, 724, 732
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	900
BspTI	CTTAAG	1 cut(s)	710
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	168, 902
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	10, 83, 291
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	32, 245
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	1 cut(s)	338
BstAFI	CTTAAG	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	5 cut(s)	519, 551, 609, 719, 732
BstDSI	CCRYGG	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	855
BstF5I	GGATG	2 cut(s)	407, 733
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	38, 65
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	290
BstUI	CGCG	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	453
Bsu36I	CCTNAGG	1 cut(s)	551
BsuRI	GGCC	4 cut(s)	82, 110, 265, 614
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	407, 733
BtsIMutI	CAGTG	2 cut(s)	632, 909
BtuMI	TCGCGA	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	1 cut(s)	493
CviAII	CATG	1 cut(s)	559
DdeI	CTNAG	5 cut(s)	519, 551, 609, 719, 732
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
EaeI	YGGCCR	2 cut(s)	80, 108
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	3 cut(s)	136, 254, 525
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	849
Eco81I	CCTNAGG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	855
EcoRI	GAATTC	2 cut(s)	286, 593
EcoRII	CCWGG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	3 cut(s)	136, 254, 525
ErhI	CCWWGG	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	1 cut(s)	562
FatI	CATG	1 cut(s)	558
Fnu4HI	GCNGC	2 cut(s)	80, 354
FokI	GGATG	2 cut(s)	394, 740
FriOI	GRGCYC	3 cut(s)	136, 254, 525
Fsp4HI	GCNGC	2 cut(s)	80, 354
FspBI	CTAG	2 cut(s)	543, 804
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	80, 354
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	82, 110, 265, 614
HapII	CCGG	2 cut(s)	107, 137
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	2 cut(s)	329, 664
HinfI	GANTC	4 cut(s)	92, 213, 562, 570
HpaII	CCGG	2 cut(s)	107, 137
HphI	GGTGA	5 cut(s)	170, 311, 396, 557, 872
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	6 cut(s)	97, 186, 218, 520, 592, 722
Hpy188III	TCNNGA	4 cut(s)	35, 436, 476, 602
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	6 cut(s)	16, 62, 401, 442, 824, 918
HpyCH4III	ACNGT	2 cut(s)	32, 245
HpyCH4IV	ACGT	2 cut(s)	338, 847
HpyCH4V	TGCA	2 cut(s)	382, 907
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	5 cut(s)	519, 551, 609, 719, 732
HpySE526I	ACGT	2 cut(s)	338, 847
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	3 cut(s)	131, 139, 898
LweI	GCATC	3 cut(s)	109, 595, 718
MaeI	CTAG	2 cut(s)	543, 804
MaeII	ACGT	2 cut(s)	338, 847
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	3 cut(s)	199, 458, 905
MfeI	CAATTG	1 cut(s)	943
MhlI	GDGCHC	3 cut(s)	136, 254, 525
MluCI	AATT	5 cut(s)	286, 343, 495, 593, 943
MmeI	TCCRAC	1 cut(s)	862
MnlI	CCTC	5 cut(s)	255, 708, 727, 878, 889
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	4 cut(s)	426, 465, 678, 711
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	2 cut(s)	107, 137
MspR9I	CCNGG	1 cut(s)	292
MunI	CAATTG	1 cut(s)	943
Mva1269I	GAATGC	1 cut(s)	752
MvaI	CCWGG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	1 cut(s)	900
NmuCI	GTSAC	1 cut(s)	505
NruI	TCGCGA	1 cut(s)	437
PctI	GAATGC	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	92, 213, 562, 570
PkrI	GCNGC	2 cut(s)	81, 355
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	900
PspPI	GGNCC	1 cut(s)	206
RruI	TCGCGA	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	4 cut(s)	426, 465, 678, 711
SatI	GCNGC	2 cut(s)	80, 354
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	3 cut(s)	136, 254, 525
SfaNI	GCATC	3 cut(s)	109, 595, 718
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	5 cut(s)	286, 343, 495, 593, 943
SsiI	CCGC	3 cut(s)	79, 354, 388
SspMI	CTAG	2 cut(s)	543, 804
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	32, 245
TaiI	ACGT	2 cut(s)	341, 850
TaqI	TCGA	3 cut(s)	36, 335, 744
TasI	AATT	5 cut(s)	286, 343, 495, 593, 943
TauI	GCSGC	2 cut(s)	82, 356
TfiI	GAWTC	4 cut(s)	92, 213, 562, 570
Tru1I	TTAA	4 cut(s)	426, 465, 678, 711
Tru9I	TTAA	4 cut(s)	426, 465, 678, 711
TscAI	CASTG	2 cut(s)	639, 909
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	5 cut(s)	44, 299, 305, 575, 789
TspGWI	ACGGA	1 cut(s)	740
TspRI	CASTG	2 cut(s)	639, 909
Vha464I	CTTAAG	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	855
XapI	RAATTY	2 cut(s)	286, 593
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	2 cut(s)	543, 804
ZraI	GACGTC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.