RLG00000023558

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017431
Physical Location & Seq
Forward (+)
25202214 .. 25204449
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023558

Sequence Viewer

Length: 1170 bp
ATGGCGTTGCGAGGCAAAATTAGGGAATCGACAAAAGTTAAAAGGTACTGGCCTGGAAAAGCTCCAGAGTGGGCAAATGATCATGACACTTGCTCCTCCGACGAAGAAGGGATAACCATCTTGTACAAATCCTTCTCAACTCGTGATGATGATCCTAGACTACGTCGTTTGGCCGAGAGGAGGAGTGTAAAGAGGCTCATCCGTCGTGCCGAGATTGTTGACACAACTGAAGAGGAGGAGGAGGAGGAAGAAGAAGAGGATGCAGAGACTTTGGAGGAAAGAAAAAGAAGGATTAAGGAGAGGTTGCTTCGTCAGAGGGAGCAGAAACAACAACAAGAGGAGTTTGAGACTGATGACTACTGCTCGGAAGAAGAATCCGATGAGGACTACTCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGAGATTGTTGGTGAAGTAGTTACGGTGAAGCCTGTATTTTTGTCCAAGTCCACAAGAGACACGGTAGTTGAACGCAAGAGACTTGAGGAGGCCGAAGAGCAGGCCCTGGAAGCGAGGAGAAGGGAGCTGGAGGAGAGGAAGAAAGAGACAAGGAGAATGGTGCTCGAAGAGATTCGGAAAGACAAAGAGATTCACAAGGGTTTGATGAATCAAGATTCGGCAAATGATGATGTTGACACTGAAAATGATCCTAAGGAGGATACTAAAGCAGCTTGGAAGGCAATAGAGAGGGCTAGGCTCAAGAAGGAGAGGGCAGCAAGGGAAGCAGTCATTTTGAAGGAGATAGAGAAGATGAATGATCAAGAGAGGAGGGAGTACTGGGAGAGGAAGAATCCTCCCTCACCTCCTGTCAAGAATTTCGGGCGTAGAGGAAGGGCTAAATGGACTCATGTTGTCAATGAGGATACTACTGATTGGAACAGCCCGTGGATGTGGAATGATCGTCAAAGGTCAAGGTATAATGTGAAAATGGCAGCCATGAATGCACCAATAGCAAGACCAAAAGGAAACAAGAGATTGAGGTCTCCGGCCGGTTCTCTTTTTACTGATGCACAGTTGAGGACAGTTGTGGAGGGGTTGCATTCATCCTGGAAACTGGAAATAGTAGATAGACAGGAAGCAGAGAGCTGTGAAACTGGAGAGCAGGACAATGAGAAAAAGCAAGAGAAAATCCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFAP1

Protein Analysis

390

Amino Acids

46.35

Weight (kDa)

5.04

Isoelectric Point (pI)

81.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFAP1 PF06991 141 - 268 9e-13 Microfibril-associated/Pre-mRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017431)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0479581
rosa_laevigata RLG00000023558 RLG00000029558 RLG00000029584
rosa_multiflora Rmu_sc0002232.1_g000002 Rmu_sc0007129.1_g000020
rosa_roxburghii Rroxscaffold_6G00402140
rosa_rugosa Rorug03G0176600
rosa_samantha Rh3BG260500 Rh3CG257300 Rh3CG257900
rosa_wichuraiana Rw3G020310 Rw3G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 146, 671
AcoI YGGCCR 2 cut(s) 171, 1017
AcsI RAATTY 1 cut(s) 844
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 3 cut(s) 47, 125, 806
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 500, 766
AjnI CCWGG 3 cut(s) 52, 534, 1076
AluBI AGCT 4 cut(s) 62, 556, 701, 1116
AluI AGCT 4 cut(s) 62, 556, 701, 1116
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 6 cut(s) 260, 341, 480, 502, 569, 1017
AlwI GGATC 2 cut(s) 146, 671
AlwNI CAGNNNCTG 1 cut(s) 535
AoxI GGCC 5 cut(s) 50, 171, 519, 531, 1017
ApeKI GCWGC 3 cut(s) 698, 743, 962
ApoI RAATTY 1 cut(s) 844
Asp700I GAANNNNTTC 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 3 cut(s) 452, 466, 822
AxyI CCTNAGG 1 cut(s) 681
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BauI CACGAG 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 3 cut(s) 710, 755, 974
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 3 cut(s) 54, 536, 1078
BciVI GTATCC 2 cut(s) 682, 886
BclI TGATCA 2 cut(s) 79, 787
BcoDI GTCTC 6 cut(s) 260, 341, 480, 502, 569, 1017
BfaI CTAG 2 cut(s) 156, 723
BfuI GTATCC 2 cut(s) 682, 886
BisI GCNGC 3 cut(s) 699, 744, 963
BlsI GCNGC 3 cut(s) 700, 745, 964
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 3 cut(s) 54, 536, 1078
BmgT120I GGNCC 1 cut(s) 532
BmrFI CCNGG 3 cut(s) 54, 536, 1078
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 2 cut(s) 250, 1027
BmuI ACTGGG 1 cut(s) 817
BplI GAGNNNNNCTC 2 cut(s) 374, 406
BpmI CTGGAG 3 cut(s) 48, 578, 1146
BpuEI CTTGAG 2 cut(s) 533, 713
BsaBI GATNNNNATC 2 cut(s) 116, 150
BsaI GGTCTC 1 cut(s) 1017
BsaJI CCNNGG 2 cut(s) 534, 914
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 1019
Bse1I ACTGG 4 cut(s) 53, 812, 1089, 1129
Bse21I CCTNAGG 1 cut(s) 681
Bse8I GATNNNNATC 2 cut(s) 116, 150
BseBI CCWGG 3 cut(s) 54, 536, 1078
BseDI CCNNGG 2 cut(s) 534, 914
BseGI GGATG 5 cut(s) 198, 265, 433, 924, 1073
BseJI GATNNNNATC 2 cut(s) 116, 150
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 4 cut(s) 53, 812, 1089, 1129
BseX3I CGGCCG 1 cut(s) 1017
BseXI GCAGC 3 cut(s) 710, 755, 974
Bsh1285I CGRYCG 1 cut(s) 1020
BshFI GGCC 5 cut(s) 52, 173, 521, 533, 1019
BsiEI CGRYCG 1 cut(s) 1020
BsiHKAI GWGCWC 1 cut(s) 594
BsiSI CCGG 2 cut(s) 1016, 1020
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 6 cut(s) 260, 341, 480, 502, 569, 1017
BsmI GAATGC 2 cut(s) 976, 1069
BsnI GGCC 5 cut(s) 52, 173, 521, 533, 1019
Bso31I GGTCTC 1 cut(s) 1017
Bsp1286I GDGCHC 1 cut(s) 594
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 5 cut(s) 79, 151, 676, 787, 928
BspANI GGCC 5 cut(s) 52, 173, 521, 533, 1019
BspCNI CTCAG 1 cut(s) 404
BspHI TCATGA 1 cut(s) 82
BspPI GGATC 2 cut(s) 146, 671
BspQI GCTCTTC 1 cut(s) 519
BspTNI GGTCTC 1 cut(s) 1017
BsrFI RCCGGY 1 cut(s) 1019
BsrGI TGTACA 1 cut(s) 123
BsrI ACTGG 4 cut(s) 53, 812, 1089, 1129
BssAI RCCGGY 1 cut(s) 1019
BssECI CCNNGG 2 cut(s) 534, 914
BssMI GATC 5 cut(s) 79, 151, 676, 787, 928
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 3 cut(s) 54, 536, 1078
Bst4CI ACNGT 4 cut(s) 454, 493, 1044, 1054
Bst6I CTCTTC 5 cut(s) 225, 249, 417, 519, 591
BstAUI TGTACA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 391, 681
BstDSI CCRYGG 1 cut(s) 914
BstF5I GGATG 5 cut(s) 198, 265, 433, 924, 1073
BstKTI GATC 5 cut(s) 82, 154, 679, 790, 931
BstMAI GTCTC 6 cut(s) 260, 341, 480, 502, 569, 1017
BstMBI GATC 5 cut(s) 79, 151, 676, 787, 928
BstMCI CGRYCG 1 cut(s) 1020
BstMWI GCNNNNNNNGC 5 cut(s) 539, 707, 752, 971, 980
BstNI CCWGG 3 cut(s) 54, 536, 1078
BstSCI CCNGG 3 cut(s) 52, 534, 1076
BstV1I GCAGC 3 cut(s) 710, 755, 974
BstZI CGGCCG 1 cut(s) 1017
Bsu36I CCTNAGG 1 cut(s) 681
BsuI GTATCC 2 cut(s) 682, 886
BsuRI GGCC 5 cut(s) 52, 173, 521, 533, 1019
BtgI CCRYGG 1 cut(s) 914
BtsCI GGATG 5 cut(s) 198, 265, 433, 924, 1073
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 531
CaiI CAGNNNCTG 1 cut(s) 535
CciI TCATGA 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 1019
Cfr13I GGNCC 1 cut(s) 532
Csp6I GTAC 3 cut(s) 46, 124, 805
CviAII CATG 3 cut(s) 83, 878, 967
CviQI GTAC 3 cut(s) 46, 124, 805
DdeI CTNAG 2 cut(s) 391, 681
DpnI GATC 5 cut(s) 81, 153, 678, 789, 930
DpnII GATC 5 cut(s) 79, 151, 676, 787, 928
EaeI YGGCCR 2 cut(s) 171, 1017
EagI CGGCCG 1 cut(s) 1017
Eam1104I CTCTTC 5 cut(s) 225, 249, 417, 519, 591
EarI CTCTTC 5 cut(s) 225, 249, 417, 519, 591
EclXI CGGCCG 1 cut(s) 1017
Eco31I GGTCTC 1 cut(s) 1017
Eco52I CGGCCG 1 cut(s) 1017
Eco57I CTGAAG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 3 cut(s) 52, 534, 1076
FaeI CATG 3 cut(s) 86, 881, 970
FaiI YATR 4 cut(s) 84, 879, 948, 968
FatI CATG 3 cut(s) 82, 877, 966
FbaI TGATCA 2 cut(s) 79, 787
Fnu4HI GCNGC 3 cut(s) 699, 744, 963
FokI GGATG 5 cut(s) 185, 272, 440, 931, 1060
Fsp4HI GCNGC 3 cut(s) 699, 744, 963
FspBI CTAG 2 cut(s) 156, 723
GluI GCNGC 3 cut(s) 699, 744, 963
GsuI CTGGAG 3 cut(s) 48, 578, 1146
HaeIII GGCC 5 cut(s) 52, 173, 521, 533, 1019
HapII CCGG 2 cut(s) 1016, 1020
Hin1II CATG 3 cut(s) 86, 881, 970
HincII GTYRAC 2 cut(s) 220, 664
HindII GTYRAC 2 cut(s) 220, 664
HinfI GANTC 8 cut(s) 26, 374, 601, 619, 637, 644, 820, 874
HpaII CCGG 2 cut(s) 1016, 1020
HphI GGTGA 3 cut(s) 452, 466, 822
Hpy166II GTNNAC 3 cut(s) 220, 480, 664
Hpy188I TCNGA 6 cut(s) 100, 315, 367, 379, 394, 606
Hpy188III TCNNGA 7 cut(s) 65, 83, 143, 641, 730, 791, 841
Hpy8I GTNNAC 3 cut(s) 220, 480, 664
Hpy99I CGWCG 3 cut(s) 104, 168, 207
HpyAV CCTTC 8 cut(s) 101, 142, 282, 543, 700, 727, 760, 855
HpyCH4III ACNGT 4 cut(s) 454, 493, 1044, 1054
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 263, 974, 1040, 1069
HpyF10VI GCNNNNNNNGC 5 cut(s) 539, 707, 752, 971, 980
HpyF3I CTNAG 2 cut(s) 391, 681
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 3 cut(s) 86, 881, 970
Ksp22I TGATCA 2 cut(s) 79, 787
Kzo9I GATC 5 cut(s) 79, 151, 676, 787, 928
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 4 cut(s) 67, 98, 319, 553
Lsp1109I GCAGC 3 cut(s) 710, 755, 974
LweI GCATC 2 cut(s) 250, 1027
MaeI CTAG 2 cut(s) 156, 723
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 448
MalI GATC 5 cut(s) 81, 153, 678, 789, 930
MboI GATC 5 cut(s) 79, 151, 676, 787, 928
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 3 cut(s) 18, 844, 1165
MlyI GAGTC 1 cut(s) 868
MmeI TCCRAC 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 4 cut(s) 39, 294, 1164, 1168
MspI CCGG 2 cut(s) 1016, 1020
MspR9I CCNGG 3 cut(s) 54, 536, 1078
Mva1269I GAATGC 2 cut(s) 976, 1069
MvaI CCWGG 3 cut(s) 54, 536, 1078
MwoI GCNNNNNNNGC 5 cut(s) 539, 707, 752, 971, 980
NdeII GATC 5 cut(s) 79, 151, 676, 787, 928
NlaIII CATG 3 cut(s) 86, 881, 970
NmeAIII GCCGAG 2 cut(s) 199, 235
PacI TTAATTAA 1 cut(s) 1168
PagI TCATGA 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 2 cut(s) 976, 1069
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 7 cut(s) 26, 374, 601, 619, 637, 644, 820
PflFI GACNNNGTC 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 1076
PkrI GCNGC 3 cut(s) 700, 745, 964
PleI GAGTC 1 cut(s) 868
PpsI GAGTC 1 cut(s) 868
Psp6I CCWGG 3 cut(s) 52, 534, 1076
PspGI CCWGG 3 cut(s) 52, 534, 1076
PspPI GGNCC 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 535
PsyI GACNNNGTC 1 cut(s) 162
RsaI GTAC 3 cut(s) 47, 125, 806
RsaNI GTAC 3 cut(s) 46, 124, 805
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 4 cut(s) 39, 294, 1164, 1168
SatI GCNGC 3 cut(s) 699, 744, 963
Sau3AI GATC 5 cut(s) 79, 151, 676, 787, 928
Sau96I GGNCC 1 cut(s) 532
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 1 cut(s) 868
ScrFI CCNGG 3 cut(s) 54, 536, 1078
SduI GDGCHC 1 cut(s) 594
SfaNI GCATC 2 cut(s) 250, 1027
SmlI CTYRAG 2 cut(s) 512, 728
SmoI CTYRAG 2 cut(s) 512, 728
Sse9I AATT 3 cut(s) 18, 844, 1165
SspMI CTAG 2 cut(s) 156, 723
StyD4I CCNGG 3 cut(s) 52, 534, 1076
TaaI ACNGT 4 cut(s) 454, 493, 1044, 1054
TaiI ACGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 29, 594
TasI AATT 3 cut(s) 18, 844, 1165
TatI WGTACW 2 cut(s) 123, 804
TfiI GAWTC 7 cut(s) 26, 374, 601, 619, 637, 644, 820
Tru1I TTAA 4 cut(s) 39, 294, 1164, 1168
Tru9I TTAA 4 cut(s) 39, 294, 1164, 1168
TscAI CASTG 1 cut(s) 673
TseI GCWGC 3 cut(s) 698, 743, 962
TspDTI ATGAA 4 cut(s) 650, 797, 983, 1062
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 673
Tth111I GACNNNGTC 1 cut(s) 162
XapI RAATTY 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 2 cut(s) 156, 723
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.