Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007129.1

Orthogroup ID

OG0017431

Physical Location & Seq

Genomic Coordinates Forward (+)

87724 .. 88340

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007129.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggtgctcgaagagattcggaaagacgaagagattcacaagggtttgatgaatcaggattcggcaaatgatgatgttgacactgacaatgatcctgaggaggatactaaagcagcttggaaggcaagagagagggccaggctcaagaaggagagggcagcaagggaagcaccccgaaaggggaagcttaagttcatgcagagagatcaccacaggggagctttcttccgttcggactctgatgatgaatatggcgttttaggaagagattattctgccccaactggagaggataaaatggataaaacaagactgcccaaggtgatgcaggtcaagaatttcgggcgtaggggaagggctaaatggactcatcttgtcaatgaggatactactgattggaacagcccgtggatgtggaatgatcgtcaaaggtcaaggtataatgtgaaaatggcagccatgaatgcaccaatagcaagaccaaaaggaaacaagagattgaggttctctgtggaggaagatgaactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFAP1

Protein Analysis

176

Amino Acids

20.74

Weight (kDa)

9.24

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017431)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0479581
rosa_laevigata	RLG00000023558 RLG00000029558 RLG00000029584
rosa_multiflora	Rmu_sc0002232.1_g000002 Rmu_sc0007129.1_g000020
rosa_roxburghii	Rroxscaffold_6G00402140
rosa_rugosa	Rorug03G0176600
rosa_samantha	Rh3BG260500 Rh3CG257300 Rh3CG257900
rosa_wichuraiana	Rw3G020310 Rw3G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	337
AfiI	CCNNNNNNNGG	2 cut(s)	179, 180
AflII	CTTAAG	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	3 cut(s)	116, 187, 221
AluI	AGCT	3 cut(s)	116, 187, 221
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	3 cut(s)	113, 158, 455
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	2 cut(s)	15, 33
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	200, 334
AxyI	CCTNAGG	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	125, 170, 467
BciT130I	CCWGG	1 cut(s)	139
BciVI	GTATCC	2 cut(s)	97, 379
BfrI	CTTAAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	2 cut(s)	97, 379
BisI	GCNGC	3 cut(s)	114, 159, 456
BlsI	GCNGC	3 cut(s)	115, 160, 457
Bme1390I	CCNGG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	318, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 180
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	318, 407
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	179, 180
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	125, 170, 467
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	179, 180
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	91, 205, 421
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	318, 407
BssMI	GATC	3 cut(s)	91, 205, 421
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	3 cut(s)	6, 24, 259
BstAFI	CTTAAG	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	3 cut(s)	94, 208, 424
BstMBI	GATC	3 cut(s)	91, 205, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 167, 464, 473
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	125, 170, 467
Bsu36I	CCTNAGG	1 cut(s)	96
BsuI	GTATCC	2 cut(s)	97, 379
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	135
CviAII	CATG	2 cut(s)	196, 460
CviJI	RGCY	8 cut(s)	116, 137, 142, 187, 221, 359, 405, 458
CviKI_1	RGCY	8 cut(s)	116, 137, 142, 187, 221, 359, 405, 458
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	93, 207, 423
DpnII	GATC	3 cut(s)	91, 205, 421
Eam1104I	CTCTTC	3 cut(s)	6, 24, 259
EarI	CTCTTC	3 cut(s)	6, 24, 259
Eco130I	CCWWGG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	199, 463
FaiI	YATR	4 cut(s)	197, 252, 441, 461
FalI	AAGNNNNNCTT	1 cut(s)	510
FatI	CATG	2 cut(s)	195, 459
Fnu4HI	GCNGC	3 cut(s)	114, 159, 456
FokI	GGATG	1 cut(s)	424
Fsp4HI	GCNGC	3 cut(s)	114, 159, 456
GluI	GCNGC	3 cut(s)	114, 159, 456
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	199, 463
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	6 cut(s)	16, 34, 52, 59, 236, 367
HphI	GGTGA	2 cut(s)	200, 334
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	21, 235, 241
Hpy188III	TCNNGA	4 cut(s)	56, 95, 145, 334
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	115, 142, 348
HpyCH4V	TGCA	3 cut(s)	199, 328, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 167, 464, 473
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	199, 463
Kzo9I	GATC	3 cut(s)	91, 205, 421
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	7 cut(s)	41, 108, 124, 151, 199, 270, 314
Lsp1109I	GCAGC	3 cut(s)	125, 170, 467
LweI	GCATC	1 cut(s)	315
MalI	GATC	3 cut(s)	93, 207, 423
MboI	GATC	3 cut(s)	91, 205, 421
MboII	GAAGA	5 cut(s)	23, 41, 217, 276, 530
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	337
MlyI	GAGTC	2 cut(s)	230, 361
MnlI	CCTC	8 cut(s)	91, 94, 126, 147, 283, 376, 495, 508
MroXI	GAANNNNTTC	2 cut(s)	15, 33
MseI	TTAA	2 cut(s)	189, 529
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	122, 167, 464, 473
NdeII	GATC	3 cut(s)	91, 205, 421
NlaIII	CATG	2 cut(s)	199, 463
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	2 cut(s)	15, 33
PfeI	GAWTC	4 cut(s)	16, 34, 52, 59
PkrI	GCNGC	3 cut(s)	115, 160, 457
PleI	GAGTC	2 cut(s)	230, 361
PpsI	GAGTC	2 cut(s)	230, 361
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	189, 529
SatI	GCNGC	3 cut(s)	114, 159, 456
Sau3AI	GATC	3 cut(s)	91, 205, 421
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	2 cut(s)	230, 361
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	8 cut(s)	118, 189, 223, 324, 333, 434, 440, 506
SfaNI	GCATC	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	143, 188
SmoI	CTYRAG	2 cut(s)	143, 188
Sse9I	AATT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	1 cut(s)	9
TasI	AATT	1 cut(s)	337
TfiI	GAWTC	4 cut(s)	16, 34, 52, 59
Tru1I	TTAA	2 cut(s)	189, 529
Tru9I	TTAA	2 cut(s)	189, 529
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	3 cut(s)	113, 158, 455
TspDTI	ATGAA	4 cut(s)	65, 184, 261, 476
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	337
XmnI	GAANNNNTTC	2 cut(s)	15, 33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.