RLG00000026395

ATPase family associated with various cellular activities (AAA)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
2760863 .. 2766540
5678 bp
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UTR
Exon/CDS
Intron
RLM00000026395

Sequence Viewer

Length: 1728 bp
ATGGAGCAGAAGCACATTCTGTTGTCTGCTTTGAGTGTCGGGGTTGGAGTTGGAGTGGGTTTGGGGTTGAGTTCCGGCCAGGCAGTAAGTAAATGGGTGAACGGAAACTGCTCGTCCGATGAGGTGACGGCGGAGCAAATTGAGCAGGAGCTGATGAGGCAGGTTGTGGATATGAGAGACTGTAAGGTTACATTTGAGGAGTTTCCTTATTATCTAAGGCCCATCTCAGAGGTAACATTGGAGCGGATGTCTGGATTGTTTGGATCCTTCTCAATACTCCCTTCAAGTGGAGAGACTAAAGGCACCTTATTACGGCCAAGCAGTGCTGCAGATCTCATATCAAGGAGTTCTGAAGGATCAACTAACCGTAGGACACTTAAAAGAAATGCCTCTTCTGTATCTGATATCAGTAGCATCAGTTCCAAAAGTGCTTCCACAAATTCAGCTCCTCTCAAGCGAATGAGTAGCTGGTGTTTTGACGAGAGACTTTTTCTACAATCACTTTACAAGGTCTTATCATCCCAATCAGAAAGTGGCTCGATCATTTTATACCTCAGGGATGTGGAGAAGCTTTTTCTCCAATCAGGACGGTTATACAATTTGTTCAGTAAAATGTTGAAGAAACTATCAGGATCCGTGTTAATACTTGGTTCCCGAATGTTAGATGCTGAAGATGATTGCAAAGAAGTAGATGAGAGGCTTGCTGCTTTGTTCACATACAATATTGAGATCACCCCCCCTGACGATGAGACTCATCTCGTCAGCTGGAAAACCCAACTGGAAAAGGACATGAAGAGGATCCAGATTCAAGATAATAAAAACCACATTGCAGAGGTACTTGCGGCAAATGATCTTGAATGTGATGATCTTGGTTCAATCTGCCATGCAGACACAATGATTAAAGAATCACTTCAGGAGTTAGTCATGCTCCCTCTTCGAAGACCAGACCTTTTCAAAGGAGGGCTCCTTAAGCCTTGTAGAGGCATACTGCTTTTTGGCCCTCCTGGTACTGGAAAAACAATGCTGGCAAAGGCCATCGCAAGTGAAGCAGGAGCAAGTTTCATCAACGTCTCCATGTCAACAATCACTTCAAAATGGTTTGGAGAAGACGAGAAGAATGTTCGAGCTCTCTTCACACTAGCAGCAAAGGTCTCGCCAACTATTATCTTTGTCGATGAGGTTGACAGCATGCTTGGGCAGAGAACTAGAGTTGGGGAGCATGAGGCGATGAGGAAGATTAAAAATGAGTTTATGGCCCACTGGGATGGACTCTTGACAAAGTCCGGAGAGCGTATACTTGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATTAGGCGTTTTGAGCGCAGAGTCATGGTTGGCCTTCCCTCTGTTGAGAACAGGGAAATGATCTTGAAAACTCTTCTTGCAAAAGAAAAGGTCGAAGATTTAGACTTCAAGGAGCTCGCAACCATGACAGAAGGATATAGTGGAAGTGATCTTAAGAACTTATGTGTGACAGCAGCTTATCGACCTGTAAGGGAGCTTATACAACAGGAAAGATTGAAGGATAAGGAAAAAAAGAAGAAAGCCGAAGAAGGCAAAAGCACAGAAGATGCTTCAGACTCGAAAGAAGAAGAAGAGAAAGAGGAGCACGTAATTACTCTAAGTCGAGCATTTTATCACTGTGCAAAAACACCGGAAAATATAGACACCAAATGCCCAAACTCATGA

Protein Analysis

576

Amino Acids

64.2

Weight (kDa)

5.76

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 329 - 459 4.8e-39 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 481 - 522 6.6e-14 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 1294
AccIII TCCGGA 1 cut(s) 1283
AciI CCGC 3 cut(s) 131, 244, 842
AclWI GGATC 7 cut(s) 258, 271, 364, 627, 640, 793, 806
AcoI YGGCCR 2 cut(s) 76, 314
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 4 cut(s) 372, 690, 896, 1599
AfaI GTAC 2 cut(s) 837, 1009
AfiI CCNNNNNNNGG 4 cut(s) 287, 312, 980, 1010
AflII CTTAAG 2 cut(s) 968, 1496
AjnI CCWGG 2 cut(s) 78, 1003
AluBI AGCT 9 cut(s) 151, 446, 468, 571, 765, 1127, 1459, 1520, 1540
AluI AGCT 9 cut(s) 151, 446, 468, 571, 765, 1127, 1459, 1520, 1540
Alw21I GWGCWC 3 cut(s) 1129, 1461, 1650
Alw26I GTCTC 6 cut(s) 171, 287, 478, 743, 1075, 1156
AlwI GGATC 7 cut(s) 258, 271, 364, 627, 640, 793, 806
AlwNI CAGNNNCTG 1 cut(s) 151
Aor13HI TCCGGA 1 cut(s) 1283
AoxI GGCC 8 cut(s) 76, 218, 314, 997, 1032, 1254, 1319, 1375
ApeKI GCWGC 5 cut(s) 326, 704, 1142, 1307, 1517
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 909
AspLEI GCGC 1 cut(s) 1362
AspS9I GGNCC 3 cut(s) 219, 998, 1255
AsuHPI GGTGA 3 cut(s) 109, 136, 724
AsuII TTCGAA 1 cut(s) 937
AxyI CCTNAGG 1 cut(s) 554
BamHI GGATCC 3 cut(s) 263, 632, 798
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 3 cut(s) 966, 1129, 1461
BbsI GAAGAC 2 cut(s) 946, 1113
Bbv12I GWGCWC 3 cut(s) 1129, 1461, 1650
BbvI GCAGC 5 cut(s) 313, 691, 1154, 1294, 1529
BccI CCATC 3 cut(s) 230, 1043, 1259
BceAI ACGGC 2 cut(s) 144, 329
BcgI CGANNNNNNTGC 2 cut(s) 1134, 1168
BciT130I CCWGG 2 cut(s) 80, 1005
BcoDI GTCTC 6 cut(s) 171, 287, 478, 743, 1075, 1156
BfaI CTAG 2 cut(s) 1139, 1206
BfmI CTRYAG 1 cut(s) 327
BfrI CTTAAG 2 cut(s) 968, 1496
BfuAI ACCTGC 1 cut(s) 151
BglII AGATCT 1 cut(s) 331
BisI GCNGC 6 cut(s) 327, 705, 843, 1143, 1308, 1518
BlsI GCNGC 6 cut(s) 328, 706, 844, 1144, 1309, 1519
Bme1390I CCNGG 2 cut(s) 80, 1005
BmgT120I GGNCC 3 cut(s) 219, 998, 1255
BmiI GGNNCC 6 cut(s) 265, 304, 634, 652, 800, 965
BmrFI CCNGG 2 cut(s) 80, 1005
BmrI ACTGGG 1 cut(s) 1270
BmsI GCATC 3 cut(s) 423, 655, 1600
BmuI ACTGGG 1 cut(s) 1270
BpiI GAAGAC 2 cut(s) 946, 1113
Bpu14I TTCGAA 1 cut(s) 937
BpuEI CTTGAG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 1651
BsaI GGTCTC 1 cut(s) 1156
BsaWI WCCGGW 2 cut(s) 1283, 1693
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 233, 263
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 312, 980, 1010
Bse1I ACTGG 3 cut(s) 783, 1015, 1265
Bse21I CCTNAGG 1 cut(s) 554
Bse3DI GCAATG 1 cut(s) 825
BseAI TCCGGA 1 cut(s) 1283
BseBI CCWGG 2 cut(s) 80, 1005
BseGI GGATG 4 cut(s) 252, 518, 565, 1270
BseLI CCNNNNNNNGG 4 cut(s) 287, 312, 980, 1010
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 2 cut(s) 240, 568
BseNI ACTGG 3 cut(s) 783, 1015, 1265
BseRI GAGGAG 3 cut(s) 212, 438, 1658
BseXI GCAGC 5 cut(s) 313, 691, 1154, 1294, 1529
BshFI GGCC 8 cut(s) 78, 220, 316, 999, 1034, 1256, 1321, 1377
BshNI GGYRCC 1 cut(s) 302
BsiHKAI GWGCWC 3 cut(s) 1129, 1461, 1650
BsiSI CCGG 3 cut(s) 75, 1284, 1694
BslI CCNNNNNNNGG 4 cut(s) 287, 312, 980, 1010
BsmAI GTCTC 6 cut(s) 171, 287, 478, 743, 1075, 1156
BsmBI CGTCTC 1 cut(s) 1075
BsnI GGCC 8 cut(s) 78, 220, 316, 999, 1034, 1256, 1321, 1377
Bso31I GGTCTC 1 cut(s) 1156
Bsp119I TTCGAA 1 cut(s) 937
Bsp1286I GDGCHC 4 cut(s) 966, 1129, 1461, 1650
Bsp13I TCCGGA 1 cut(s) 1283
BspACI CCGC 3 cut(s) 131, 244, 842
BspANI GGCC 8 cut(s) 78, 220, 316, 999, 1034, 1256, 1321, 1377
BspCNI CTCAG 2 cut(s) 239, 567
BspEI TCCGGA 1 cut(s) 1283
BspHI TCATGA 1 cut(s) 1724
BspLI GGNNCC 6 cut(s) 265, 304, 634, 652, 800, 965
BspMAI CTGCAG 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 7 cut(s) 258, 271, 364, 627, 640, 793, 806
BspT104I TTCGAA 1 cut(s) 937
BspT107I GGYRCC 1 cut(s) 302
BspTI CTTAAG 2 cut(s) 968, 1496
BspTNI GGTCTC 1 cut(s) 1156
BsrBI CCGCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 825
BsrI ACTGG 3 cut(s) 783, 1015, 1265
BssNAI GTATAC 1 cut(s) 1295
Bst1107I GTATAC 1 cut(s) 1295
Bst2UI CCWGG 2 cut(s) 80, 1005
Bst4CI ACNGT 4 cut(s) 182, 368, 591, 1682
Bst6I CTCTTC 6 cut(s) 397, 788, 939, 1136, 1422, 1629
BstAFI CTTAAG 2 cut(s) 968, 1496
BstBAI YACGTR 1 cut(s) 1651
BstBI TTCGAA 1 cut(s) 937
BstC8I GCNNGC 4 cut(s) 702, 1026, 1190, 1461
BstDEI CTNAG 4 cut(s) 215, 226, 554, 1661
BstENI CCTNNNNNAGG 1 cut(s) 978
BstF5I GGATG 4 cut(s) 252, 518, 565, 1270
BstHHI GCGC 1 cut(s) 1362
BstMAI GTCTC 6 cut(s) 171, 287, 478, 743, 1075, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 142, 157, 970, 1046, 1357
BstNI CCWGG 2 cut(s) 80, 1005
BstNSI RCATGY 1 cut(s) 1192
BstSCI CCNGG 2 cut(s) 78, 1003
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 5 cut(s) 313, 691, 1154, 1294, 1529
BstV2I GAAGAC 2 cut(s) 946, 1113
BstX2I RGATCY 4 cut(s) 263, 331, 632, 798
BstXI CCANNNNNNTGG 1 cut(s) 1265
BstYI RGATCY 4 cut(s) 263, 331, 632, 798
BstZ17I GTATAC 1 cut(s) 1295
Bsu36I CCTNAGG 1 cut(s) 554
BsuRI GGCC 8 cut(s) 78, 220, 316, 999, 1034, 1256, 1321, 1377
BtgZI GCGATG 2 cut(s) 1021, 1241
BtsCI GGATG 4 cut(s) 252, 518, 565, 1270
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 328, 1258, 1678
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 4 cut(s) 702, 1026, 1190, 1461
CaiI CAGNNNCTG 1 cut(s) 151
CciI TCATGA 1 cut(s) 1724
CfoI GCGC 1 cut(s) 1362
Cfr13I GGNCC 3 cut(s) 219, 998, 1255
Csp6I GTAC 2 cut(s) 836, 1008
CviAII CATG 9 cut(s) 790, 884, 925, 1075, 1189, 1220, 1369, 1468, 1725
CviQI GTAC 2 cut(s) 836, 1008
DdeI CTNAG 4 cut(s) 215, 226, 554, 1661
EaeI YGGCCR 2 cut(s) 76, 314
Eam1104I CTCTTC 6 cut(s) 397, 788, 939, 1136, 1422, 1629
EarI CTCTTC 6 cut(s) 397, 788, 939, 1136, 1422, 1629
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 2 cut(s) 1127, 1459
Eco24I GRGCYC 3 cut(s) 966, 1129, 1461
Eco31I GGTCTC 1 cut(s) 1156
Eco32I GATATC 1 cut(s) 406
Eco53kI GAGCTC 2 cut(s) 1127, 1459
Eco57I CTGAAG 4 cut(s) 372, 690, 896, 1599
Eco81I CCTNAGG 1 cut(s) 554
EcoICRI GAGCTC 2 cut(s) 1127, 1459
EcoNI CCTNNNNNAGG 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 78, 1003
EcoRV GATATC 1 cut(s) 406
EcoT38I GRGCYC 3 cut(s) 966, 1129, 1461
Esp3I CGTCTC 1 cut(s) 1075
FaeI CATG 9 cut(s) 793, 887, 928, 1078, 1192, 1223, 1372, 1471, 1728
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FatI CATG 9 cut(s) 789, 883, 924, 1074, 1188, 1219, 1368, 1467, 1724
FblI GTMKAC 1 cut(s) 1294
Fnu4HI GCNGC 6 cut(s) 327, 705, 843, 1143, 1308, 1518
FokI GGATG 4 cut(s) 259, 505, 572, 1277
FriOI GRGCYC 3 cut(s) 966, 1129, 1461
Fsp4HI GCNGC 6 cut(s) 327, 705, 843, 1143, 1308, 1518
FspBI CTAG 2 cut(s) 1139, 1206
GlaI GCGC 1 cut(s) 1361
GluI GCNGC 6 cut(s) 327, 705, 843, 1143, 1308, 1518
HaeIII GGCC 8 cut(s) 78, 220, 316, 999, 1034, 1256, 1321, 1377
HapII CCGG 3 cut(s) 75, 1284, 1694
HhaI GCGC 1 cut(s) 1362
Hin1II CATG 9 cut(s) 793, 887, 928, 1078, 1192, 1223, 1372, 1471, 1728
Hin6I GCGC 1 cut(s) 1360
HinP1I GCGC 1 cut(s) 1360
HincII GTYRAC 2 cut(s) 1080, 1183
HindII GTYRAC 2 cut(s) 1080, 1183
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 6 cut(s) 751, 805, 905, 1269, 1365, 1619
HpaII CCGG 3 cut(s) 75, 1284, 1694
HphI GGTGA 3 cut(s) 109, 136, 724
Hpy166II GTNNAC 5 cut(s) 100, 714, 1080, 1183, 1295
Hpy188I TCNGA 6 cut(s) 118, 229, 352, 403, 529, 1618
Hpy8I GTNNAC 5 cut(s) 100, 714, 1080, 1183, 1295
HpyAV CCTTC 7 cut(s) 277, 291, 347, 1388, 1469, 1555, 1586
HpyCH4III ACNGT 4 cut(s) 182, 368, 591, 1682
HpyCH4IV ACGT 2 cut(s) 1068, 1650
HpyCH4V TGCA 7 cut(s) 329, 681, 830, 887, 1310, 1424, 1685
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 157, 970, 1046, 1357
HpyF3I CTNAG 4 cut(s) 215, 226, 554, 1661
HpySE526I ACGT 2 cut(s) 1068, 1650
Hsp92II CATG 9 cut(s) 793, 887, 928, 1078, 1192, 1223, 1372, 1471, 1728
HspAI GCGC 1 cut(s) 1360
Kpn2I TCCGGA 1 cut(s) 1283
Lsp1109I GCAGC 5 cut(s) 313, 691, 1154, 1294, 1529
LweI GCATC 3 cut(s) 423, 655, 1600
MaeI CTAG 2 cut(s) 1139, 1206
MaeII ACGT 2 cut(s) 1068, 1650
MaeIII GTNAC 4 cut(s) 124, 187, 232, 1510
MbiI CCGCTC 1 cut(s) 244
MflI RGATCY 4 cut(s) 263, 331, 632, 798
MhlI GDGCHC 4 cut(s) 966, 1129, 1461, 1650
MluCI AATT 4 cut(s) 138, 439, 598, 1653
MlyI GAGTC 4 cut(s) 745, 1263, 1374, 1613
MmeI TCCRAC 2 cut(s) 25, 31
MroI TCCGGA 1 cut(s) 1283
MroXI GAANNNNTTC 1 cut(s) 909
MseI TTAA 6 cut(s) 378, 641, 900, 969, 1239, 1497
MslI CAYNNNNRTG 1 cut(s) 1263
MspA1I CMGCKG 1 cut(s) 765
MspCI CTTAAG 2 cut(s) 968, 1496
MspI CCGG 3 cut(s) 75, 1284, 1694
MspR9I CCNGG 2 cut(s) 80, 1005
MvaI CCWGG 2 cut(s) 80, 1005
MwoI GCNNNNNNNGC 5 cut(s) 142, 157, 970, 1046, 1357
NlaIII CATG 9 cut(s) 793, 887, 928, 1078, 1192, 1223, 1372, 1471, 1728
NlaIV GGNNCC 6 cut(s) 265, 304, 634, 652, 800, 965
NmuCI GTSAC 2 cut(s) 124, 1510
NspI RCATGY 1 cut(s) 1192
NspV TTCGAA 1 cut(s) 937
PaeI GCATGC 1 cut(s) 1192
PagI TCATGA 1 cut(s) 1724
PdmI GAANNNNTTC 1 cut(s) 909
PfeI GAWTC 2 cut(s) 805, 905
PflFI GACNNNGTC 1 cut(s) 1279
PkrI GCNGC 6 cut(s) 328, 706, 844, 1144, 1309, 1519
PleI GAGTC 4 cut(s) 745, 1263, 1373, 1613
PpsI GAGTC 4 cut(s) 745, 1263, 1373, 1613
Ppu21I YACGTR 1 cut(s) 1651
Psp124BI GAGCTC 2 cut(s) 1129, 1461
Psp6I CCWGG 2 cut(s) 78, 1003
PspGI CCWGG 2 cut(s) 78, 1003
PspN4I GGNNCC 6 cut(s) 265, 304, 634, 652, 800, 965
PspPI GGNCC 3 cut(s) 219, 998, 1255
PsrI GAACNNNNNNTAC 2 cut(s) 403, 435
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 4 cut(s) 263, 331, 632, 798
PsyI GACNNNGTC 1 cut(s) 1279
PvuII CAGCTG 1 cut(s) 765
RsaI GTAC 2 cut(s) 837, 1009
RsaNI GTAC 2 cut(s) 836, 1008
RseI CAYNNNNRTG 1 cut(s) 1263
SacI GAGCTC 2 cut(s) 1129, 1461
SaqAI TTAA 6 cut(s) 378, 641, 900, 969, 1239, 1497
SatI GCNGC 6 cut(s) 327, 705, 843, 1143, 1308, 1518
Sau96I GGNCC 3 cut(s) 219, 998, 1255
SchI GAGTC 4 cut(s) 745, 1263, 1374, 1613
ScrFI CCNGG 2 cut(s) 80, 1005
SduI GDGCHC 4 cut(s) 966, 1129, 1461, 1650
SfaNI GCATC 3 cut(s) 423, 655, 1600
SfcI CTRYAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 937
SmiMI CAYNNNNRTG 1 cut(s) 1263
SmlI CTYRAG 3 cut(s) 452, 968, 1496
SmoI CTYRAG 3 cut(s) 452, 968, 1496
SphI GCATGC 1 cut(s) 1192
Sse9I AATT 4 cut(s) 138, 439, 598, 1653
SsiI CCGC 3 cut(s) 131, 244, 842
SspI AATATT 1 cut(s) 724
SspMI CTAG 2 cut(s) 1139, 1206
SstI GAGCTC 2 cut(s) 1129, 1461
StyD4I CCNGG 2 cut(s) 78, 1003
TaaI ACNGT 4 cut(s) 182, 368, 591, 1682
TaiI ACGT 2 cut(s) 1071, 1653
TaqI TCGA 8 cut(s) 539, 937, 1123, 1173, 1437, 1525, 1622, 1666
TasI AATT 4 cut(s) 138, 439, 598, 1653
TauI GCSGC 1 cut(s) 845
TfiI GAWTC 2 cut(s) 805, 905
Tru1I TTAA 6 cut(s) 378, 641, 900, 969, 1239, 1497
Tru9I TTAA 6 cut(s) 378, 641, 900, 969, 1239, 1497
TscAI CASTG 3 cut(s) 328, 1265, 1685
TseFI GTSAC 2 cut(s) 124, 1510
TseI GCWGC 5 cut(s) 326, 704, 1142, 1307, 1517
Tsp45I GTSAC 2 cut(s) 124, 1510
TspDTI ATGAA 3 cut(s) 806, 1051, 1350
TspGWI ACGGA 2 cut(s) 117, 625
TspRI CASTG 3 cut(s) 328, 1265, 1685
Tth111I GACNNNGTC 1 cut(s) 1279
Vha464I CTTAAG 2 cut(s) 968, 1496
XagI CCTNNNNNAGG 1 cut(s) 978
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 1192
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 1294
XmnI GAANNNNTTC 1 cut(s) 909
XspI CTAG 2 cut(s) 1139, 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.