Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004289

Physical Location & Seq

Genomic Coordinates Forward (+)

2759312 .. 2765665

Gene Structure 6354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGAGCAGAAGCACATTCTGTTGTCTGCTTTGAGTGTCGGGGTTGGAGTTGGAGTGGGTTTGGGGTTGAGTTCCGGCCACGCAGTGAGTAAATGGGTGAACGGAAACTGCTCGTCCGATGAAGTGACGGTGGAGCAAATTGAGCAGGAGCTGATGAGGCAGGTTGTGGATATGAGAGACAGTAAGGTTACATTTGAGGAGTTTCCTTATTATCTAAGGGAAAGAACTCGGATGTTATTAACAAGTGCTGCATATGTACATCTGAAACACTCTGACTTATCTAAACACACCCGGAACCTTTCACCTGCAAGCAGAGCTATTTTGCTATCAGGACCTGCAGAACTTTATCATCAAATGCTCGCCAAGGCTTTAGCTCATTTCTTTGAATCGAAGTTGCTGTTGTTGGATGTTACTGACTTTTCAATGAAGATGCAGAGTAAATATGGGTGTACCAAAAAAGAATCATTTAAGAGGCCCATCTCAGAGGTAACATTGGAGCGGATGTCTGGATTGTTTGGATCCTTCTCAATCCTCCCTTCAAGTGGAGAGACTAAAGGCACCTTATTACGGCCAAGCAGTGCTGCAGATCTCATATCAAGGAGTTCTGAAGGATCAACTAACCGTAGGACACTTAAAAGAAATGCCTCTTCTGTATCTGATATCAGTAGCATCAGTTCCAAAAGTGCTTCCACAAATTCAGCTCCTCTCAAGCGAATGAGTAGCTGGTGTTTTGACGAGAGACTTTTTCTACAATCACTTTACAAGGTCTTATCCTCCATATCAGAAAGTGGTTCGATCATTTTATACCTCAGGGATGTGGAGAAGCTTTTTCTCCAATCAGGACGGTTATACAATTTGTTCAGTAAAATGTTGAAGAAACTATCAGGATCCGTGTTAATACTTGGTTCCCGAATGTTAGATGCTGAAGATGATTGCAAAGAAGTAGATGAGAGGCTTGCTGCTTTGTTCACTTACAATATTGAGATCACCCCACCTGACGATGAGACTCATCTCGTCAGCTGGAAAGCCCAACTGGAAGAGGACATGAAGAGGATCCAGTTTCAAGATAATAAAAACCACATAGCTGAGGTACTTGCGGCAAATGATCTTGAATGTGATGATCTTGGTTCAATCTGCCATGCAGACACAATGGTTCTCAGCAATTACATAGAAGAAATCGTAGTTTCAGCGATATCTTATCATTTGATGCAAAACAAAGATCCAGAGTATCGTAATGGAAAGCTTGTTATATCATCAACGAGTTTGTCCCATGGGCTGAGTATATTCCAGGAGGGAAAATGTGGCGACAAAGATTCTCTGAAACTGGAGGCGTCCAACAAGGAAACTGAGGGGGAAGAGGCTGTCAGTGCAAAGACTGAATCGAAGTCTGAAACAGCGGAGAAATCCGACACCAAAAATGAAGCAGAGAAATCTGGTTCTGCAGCAAAGAAGGAAAGCGAGAATCCACCTCCACCAAAAGTTGAAGTTCCTCCAGACAATGAATTTGAGAAGCGGATAAGGCCAGAGGTTATCCCTGCAAATGAGATTGGAGTGTCCTTTGCAGATATTGGTGCATTGGATGAGATTAAAGAATCACTTCAGGAGTTAGTCATGCTCCCTCTTCGAAGACCAGACCTTTTCAAAGGAGGGCTCCTTAAGCCTTGTAGAGGCATACTGCTTTTTGGCCCTCCTGGTACTGGAAAAACAATGCTGGCAAAGGCCATCGCAAGTGAAGCGGGAGCAAGTTTCATCAATGTTTCCATGTCAACAATCACTTCAAAATGGTTTGGAGAAGACGAGAAGAATGTTCGAGCTCTCTTCACACTAGCAGCAAAGGTCTCGCCAACTATTATCTTTGTCGATGAGGTTGACAGCATGCTTGGGCAGAGAACTAGAGTTGGGGAGCATGAGGCGATGAGGAAGATTAAAAATGAGTTTATGACCCACTGGGATGGACTCTTGACAAAGTCTGGAGAACGTATACTTGTTCTTGCTGCAACCAACAGGCCATTTGATCTTGATGAAGCAATCATTAGGCGTTTTGAGCGCAGAGTCATGGTTGGCCTTCCCTCTGTTGAGAACAGGGAAATGATCTTGAAAACTCTTCTTGCAAAAGAAAAGGTCGAAGATTTAGACTTTAAGGAGCTCGCAACCATGACAGAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

722

Amino Acids

80.21

Weight (kDa)

5.79

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	370 - 430	2.4e-36	Domain of unknown function (DUF7751)
AAA	PF00004	558 - 688	3.4e-39	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28000 AT4G28000 AT4G28000 AT5G52882
fragaria_vesca	FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620
malus_domestica	MD01G1211300.v1.1 MD07G1282000.v1.1
prunus_persica	Prupe.2G303900_v2.0.a1 Prupe.2G303900_v2.0.a1
pyrus_communis	pycom01g22180 pycom07g25590
rosa_chinensis	RchiOBHm_Chr1g0379521
rosa_laevigata	RLG00000026395
rosa_multiflora	Rmu_sc0006761.1_g000024
rosa_roxburghii	Rroxscaffold_4G00280110
rosa_rugosa	Rorug01G0412600 Rorug01G0412700 Rorug01G0412800.1 Rorug01G0412900
rosa_samantha	Rh1AG435400 Rh1BG392800 Rh1CG405400 Rh1DG423600
rosa_wichuraiana	Rw1G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
Acc36I	ACCTGC	3 cut(s)	151, 313, 343
AccB1I	GGYRCC	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	1981
AciI	CCGC	5 cut(s)	499, 1097, 1397, 1513, 1736
AclWI	GGATC	8 cut(s)	513, 526, 619, 882, 895, 1048, 1061, 1214
AcoI	YGGCCR	2 cut(s)	76, 569
AcsI	RAATTY	2 cut(s)	694, 1502
AcuI	CTGAAG	3 cut(s)	627, 945, 1583
AcyI	GRCGYC	1 cut(s)	1331
AdeI	CACNNNGTG	1 cut(s)	85
AfaI	GTAC	4 cut(s)	258, 451, 1092, 1696
AfiI	CCNNNNNNNGG	4 cut(s)	542, 567, 1667, 1697
AflII	CTTAAG	1 cut(s)	1655
AjnI	CCWGG	2 cut(s)	1287, 1690
Alw21I	GWGCWC	2 cut(s)	1816, 2148
Alw26I	GTCTC	5 cut(s)	171, 542, 733, 998, 1843
AlwI	GGATC	8 cut(s)	513, 526, 619, 882, 895, 1048, 1061, 1214
AlwNI	CAGNNNCTG	2 cut(s)	151, 335
AoxI	GGCC	8 cut(s)	76, 473, 569, 1520, 1684, 1719, 2006, 2062
ApeKI	GCWGC	6 cut(s)	248, 581, 959, 1442, 1829, 1994
ApoI	RAATTY	2 cut(s)	694, 1502
ArsI	GACNNNNNNTTYG	2 cut(s)	1487, 1519
Asp700I	GAANNNNTTC	1 cut(s)	1596
AspLEI	GCGC	1 cut(s)	2049
AspS9I	GGNCC	3 cut(s)	332, 474, 1685
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	109, 294, 979
AsuII	TTCGAA	1 cut(s)	1624
AvaII	GGWCC	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	809
BamHI	GGATCC	3 cut(s)	518, 887, 1053
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	3 cut(s)	1653, 1816, 2148
BbsI	GAAGAC	2 cut(s)	1633, 1800
Bbv12I	GWGCWC	2 cut(s)	1816, 2148
BbvCI	CCTCAGC	1 cut(s)	1086
BbvI	GCAGC	6 cut(s)	235, 568, 946, 1454, 1841, 1981
BccI	CCATC	3 cut(s)	485, 1730, 1946
BceAI	ACGGC	1 cut(s)	584
BcgI	CGANNNNNNTGC	2 cut(s)	1821, 1855
BciT130I	CCWGG	2 cut(s)	1289, 1692
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	5 cut(s)	171, 542, 733, 998, 1843
BfaI	CTAG	2 cut(s)	1826, 1893
BfmI	CTRYAG	3 cut(s)	336, 582, 1440
BfrI	CTTAAG	1 cut(s)	1655
BfuAI	ACCTGC	3 cut(s)	151, 313, 343
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	7 cut(s)	249, 582, 960, 1098, 1443, 1830, 1995
BlsI	GCNGC	7 cut(s)	250, 583, 961, 1099, 1444, 1831, 1996
Bme1390I	CCNGG	3 cut(s)	292, 1289, 1692
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	332, 474, 1685
BmiI	GGNNCC	7 cut(s)	296, 520, 559, 889, 907, 1055, 1652
BmrFI	CCNGG	3 cut(s)	292, 1289, 1692
BmrI	ACTGGG	1 cut(s)	1957
BmsI	GCATC	4 cut(s)	420, 678, 910, 1197
BmuI	ACTGGG	1 cut(s)	1957
BpiI	GAAGAC	2 cut(s)	1633, 1800
BpmI	CTGGAG	3 cut(s)	1346, 1476, 1992
Bpu10I	CCTNAGC	1 cut(s)	1086
Bpu14I	TTCGAA	1 cut(s)	1624
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	1331
BsaI	GGTCTC	1 cut(s)	1843
BsaJI	CCNNGG	2 cut(s)	363, 1270
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 488, 518
Bsc4I	CCNNNNNNNGG	4 cut(s)	542, 567, 1667, 1697
Bse1I	ACTGG	5 cut(s)	1038, 1057, 1329, 1702, 1952
Bse21I	CCTNAGG	1 cut(s)	809
BseBI	CCWGG	2 cut(s)	1289, 1692
BseDI	CCNNGG	2 cut(s)	363, 1270
BseGI	GGATG	6 cut(s)	237, 412, 507, 820, 1585, 1957
BseLI	CCNNNNNNNGG	4 cut(s)	542, 567, 1667, 1697
BseMII	CTCAG	6 cut(s)	495, 823, 1077, 1171, 1268, 1338
BseNI	ACTGG	5 cut(s)	1038, 1057, 1329, 1702, 1952
BseRI	GAGGAG	2 cut(s)	212, 693
BseXI	GCAGC	6 cut(s)	235, 568, 946, 1454, 1841, 1981
BshFI	GGCC	8 cut(s)	78, 475, 571, 1522, 1686, 1721, 2008, 2064
BshNI	GGYRCC	1 cut(s)	557
BsiHKAI	GWGCWC	2 cut(s)	1816, 2148
BsiSI	CCGG	2 cut(s)	75, 292
BslFI	GGGAC	1 cut(s)	1252
BslI	CCNNNNNNNGG	4 cut(s)	542, 567, 1667, 1697
BsmAI	GTCTC	5 cut(s)	171, 542, 733, 998, 1843
BsmFI	GGGAC	1 cut(s)	1252
BsnI	GGCC	8 cut(s)	78, 475, 571, 1522, 1686, 1721, 2008, 2064
Bso31I	GGTCTC	1 cut(s)	1843
Bsp119I	TTCGAA	1 cut(s)	1624
Bsp1286I	GDGCHC	3 cut(s)	1653, 1816, 2148
Bsp1407I	TGTACA	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	1270
BspACI	CCGC	5 cut(s)	499, 1097, 1397, 1513, 1736
BspANI	GGCC	8 cut(s)	78, 475, 571, 1522, 1686, 1721, 2008, 2064
BspCNI	CTCAG	6 cut(s)	494, 822, 1078, 1170, 1269, 1339
BspLI	GGNNCC	7 cut(s)	296, 520, 559, 889, 907, 1055, 1652
BspMAI	CTGCAG	3 cut(s)	340, 586, 1444
BspMI	ACCTGC	3 cut(s)	151, 313, 343
BspPI	GGATC	8 cut(s)	513, 526, 619, 882, 895, 1048, 1061, 1214
BspT104I	TTCGAA	1 cut(s)	1624
BspT107I	GGYRCC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	1655
BspTNI	GGTCTC	1 cut(s)	1843
BsrBI	CCGCTC	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	5 cut(s)	1038, 1057, 1329, 1702, 1952
BssECI	CCNNGG	2 cut(s)	363, 1270
BssNAI	GTATAC	1 cut(s)	1982
BssNI	GRCGYC	1 cut(s)	1331
BssT1I	CCWWGG	2 cut(s)	363, 1270
Bst1107I	GTATAC	1 cut(s)	1982
Bst2UI	CCWGG	2 cut(s)	1289, 1692
Bst4CI	ACNGT	4 cut(s)	130, 182, 623, 846
Bst6I	CTCTTC	7 cut(s)	652, 1032, 1043, 1350, 1626, 1823, 2109
BstACI	GRCGYC	1 cut(s)	1331
BstAFI	CTTAAG	1 cut(s)	1655
BstAUI	TGTACA	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	1624
BstC8I	GCNNGC	6 cut(s)	310, 360, 957, 1713, 1877, 2148
BstDEI	CTNAG	7 cut(s)	215, 481, 809, 1086, 1157, 1277, 1347
BstDSI	CCRYGG	1 cut(s)	1270
BstENI	CCTNNNNNAGG	1 cut(s)	1665
BstF5I	GGATG	6 cut(s)	237, 412, 507, 820, 1585, 1957
BstHHI	GCGC	1 cut(s)	2049
BstMAI	GTCTC	5 cut(s)	171, 542, 733, 998, 1843
BstMWI	GCNNNNNNNGC	8 cut(s)	142, 157, 314, 1367, 1519, 1657, 1733, 2044
BstNI	CCWGG	2 cut(s)	1289, 1692
BstNSI	RCATGY	1 cut(s)	1879
BstSCI	CCNGG	3 cut(s)	290, 1287, 1690
BstSFI	CTRYAG	3 cut(s)	336, 582, 1440
BstV1I	GCAGC	6 cut(s)	235, 568, 946, 1454, 1841, 1981
BstV2I	GAAGAC	2 cut(s)	1633, 1800
BstX2I	RGATCY	5 cut(s)	518, 586, 887, 1053, 1219
BstXI	CCANNNNNNTGG	1 cut(s)	1952
BstYI	RGATCY	5 cut(s)	518, 586, 887, 1053, 1219
BstZ17I	GTATAC	1 cut(s)	1982
Bsu36I	CCTNAGG	1 cut(s)	809
BsuRI	GGCC	8 cut(s)	78, 475, 571, 1522, 1686, 1721, 2008, 2064
BtgI	CCRYGG	1 cut(s)	1270
BtgZI	GCGATG	2 cut(s)	1708, 1928
BtsCI	GGATG	6 cut(s)	237, 412, 507, 820, 1585, 1957
BtsI	GCAGTG	2 cut(s)	90, 583
BtsIMutI	CAGTG	4 cut(s)	90, 583, 1372, 1945
BveI	ACCTGC	3 cut(s)	151, 313, 343
Cac8I	GCNNGC	6 cut(s)	310, 360, 957, 1713, 1877, 2148
CaiI	CAGNNNCTG	2 cut(s)	151, 335
CfoI	GCGC	1 cut(s)	2049
Cfr13I	GGNCC	3 cut(s)	332, 474, 1685
CseI	GACGC	1 cut(s)	1320
Csp6I	GTAC	4 cut(s)	257, 450, 1091, 1695
CviAII	CATG	9 cut(s)	1045, 1139, 1271, 1612, 1762, 1876, 1907, 2056, 2155
CviQI	GTAC	4 cut(s)	257, 450, 1091, 1695
DdeI	CTNAG	7 cut(s)	215, 481, 809, 1086, 1157, 1277, 1347
DraIII	CACNNNGTG	1 cut(s)	85
EaeI	YGGCCR	2 cut(s)	76, 569
Eam1104I	CTCTTC	7 cut(s)	652, 1032, 1043, 1350, 1626, 1823, 2109
EarI	CTCTTC	7 cut(s)	652, 1032, 1043, 1350, 1626, 1823, 2109
Ecl136II	GAGCTC	2 cut(s)	1814, 2146
Eco130I	CCWWGG	2 cut(s)	363, 1270
Eco24I	GRGCYC	3 cut(s)	1653, 1816, 2148
Eco31I	GGTCTC	1 cut(s)	1843
Eco32I	GATATC	2 cut(s)	661, 1194
Eco47I	GGWCC	1 cut(s)	332
Eco53kI	GAGCTC	2 cut(s)	1814, 2146
Eco57I	CTGAAG	3 cut(s)	627, 945, 1583
Eco81I	CCTNAGG	1 cut(s)	809
EcoICRI	GAGCTC	2 cut(s)	1814, 2146
EcoNI	CCTNNNNNAGG	1 cut(s)	1665
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	1287, 1690
EcoRV	GATATC	2 cut(s)	661, 1194
EcoT14I	CCWWGG	2 cut(s)	363, 1270
EcoT38I	GRGCYC	3 cut(s)	1653, 1816, 2148
ErhI	CCWWGG	2 cut(s)	363, 1270
FaeI	CATG	9 cut(s)	1048, 1142, 1274, 1615, 1765, 1879, 1910, 2059, 2158
FalI	AAGNNNNNCTT	2 cut(s)	1581, 1613
FaqI	GGGAC	1 cut(s)	1252
FatI	CATG	9 cut(s)	1044, 1138, 1270, 1611, 1761, 1875, 1906, 2055, 2154
FauI	CCCGC	1 cut(s)	1729
FauNDI	CATATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	1981
Fnu4HI	GCNGC	7 cut(s)	249, 582, 960, 1098, 1443, 1830, 1995
FokI	GGATG	6 cut(s)	244, 419, 514, 827, 1592, 1964
FriOI	GRGCYC	3 cut(s)	1653, 1816, 2148
Fsp4HI	GCNGC	7 cut(s)	249, 582, 960, 1098, 1443, 1830, 1995
FspBI	CTAG	2 cut(s)	1826, 1893
GlaI	GCGC	1 cut(s)	2048
GluI	GCNGC	7 cut(s)	249, 582, 960, 1098, 1443, 1830, 1995
GsuI	CTGGAG	3 cut(s)	1346, 1476, 1992
HaeIII	GGCC	8 cut(s)	78, 475, 571, 1522, 1686, 1721, 2008, 2064
HapII	CCGG	2 cut(s)	75, 292
HgaI	GACGC	1 cut(s)	1320
HhaI	GCGC	1 cut(s)	2049
Hin1I	GRCGYC	1 cut(s)	1331
Hin1II	CATG	9 cut(s)	1048, 1142, 1274, 1615, 1765, 1879, 1910, 2059, 2158
Hin6I	GCGC	1 cut(s)	2047
HinP1I	GCGC	1 cut(s)	2047
HincII	GTYRAC	2 cut(s)	1767, 1870
HindII	GTYRAC	2 cut(s)	1767, 1870
HindIII	AAGCTT	2 cut(s)	824, 1241
HinfI	GANTC	9 cut(s)	386, 461, 1006, 1313, 1379, 1462, 1592, 1956, 2052
HpaII	CCGG	2 cut(s)	75, 292
HphI	GGTGA	3 cut(s)	109, 294, 979
Hpy166II	GTNNAC	6 cut(s)	100, 450, 969, 1767, 1870, 1982
Hpy8I	GTNNAC	6 cut(s)	100, 450, 969, 1767, 1870, 1982
HpyAV	CCTTC	5 cut(s)	532, 546, 602, 1444, 2075
HpyCH4III	ACNGT	4 cut(s)	130, 182, 623, 846
HpyCH4IV	ACGT	1 cut(s)	1978
HpyF10VI	GCNNNNNNNGC	8 cut(s)	142, 157, 314, 1367, 1519, 1657, 1733, 2044
HpyF3I	CTNAG	7 cut(s)	215, 481, 809, 1086, 1157, 1277, 1347
HpySE526I	ACGT	1 cut(s)	1978
Hsp92I	GRCGYC	1 cut(s)	1331
Hsp92II	CATG	9 cut(s)	1048, 1142, 1274, 1615, 1765, 1879, 1910, 2059, 2158
HspAI	GCGC	1 cut(s)	2047
Lsp1109I	GCAGC	6 cut(s)	235, 568, 946, 1454, 1841, 1981
LweI	GCATC	4 cut(s)	420, 678, 910, 1197
MaeI	CTAG	2 cut(s)	1826, 1893
MaeII	ACGT	1 cut(s)	1978
MaeIII	GTNAC	4 cut(s)	124, 187, 409, 487
MbiI	CCGCTC	1 cut(s)	499
MflI	RGATCY	5 cut(s)	518, 586, 887, 1053, 1219
MhlI	GDGCHC	3 cut(s)	1653, 1816, 2148
MluCI	AATT	5 cut(s)	138, 694, 853, 1162, 1502
MlyI	GAGTC	3 cut(s)	1000, 1950, 2061
MmeI	TCCRAC	5 cut(s)	25, 31, 384, 1359, 1431
MroXI	GAANNNNTTC	1 cut(s)	1596
MseI	TTAA	8 cut(s)	239, 468, 633, 896, 1587, 1656, 1926, 2139
MslI	CAYNNNNRTG	1 cut(s)	1950
MspA1I	CMGCKG	2 cut(s)	1020, 1397
MspCI	CTTAAG	1 cut(s)	1655
MspI	CCGG	2 cut(s)	75, 292
MspR9I	CCNGG	3 cut(s)	292, 1289, 1692
MvaI	CCWGG	2 cut(s)	1289, 1692
MwoI	GCNNNNNNNGC	8 cut(s)	142, 157, 314, 1367, 1519, 1657, 1733, 2044
NciI	CCSGG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	1270
NdeI	CATATG	1 cut(s)	253
NlaIII	CATG	9 cut(s)	1048, 1142, 1274, 1615, 1765, 1879, 1910, 2059, 2158
NlaIV	GGNNCC	7 cut(s)	296, 520, 559, 889, 907, 1055, 1652
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	1879
NspV	TTCGAA	1 cut(s)	1624
PaeI	GCATGC	1 cut(s)	1879
PaqCI	CACCTGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	1596
PfeI	GAWTC	6 cut(s)	386, 461, 1313, 1379, 1462, 1592
PflFI	GACNNNGTC	1 cut(s)	1966
PfoI	TCCNGGA	1 cut(s)	1287
PkrI	GCNGC	7 cut(s)	250, 583, 961, 1099, 1444, 1831, 1996
PleI	GAGTC	3 cut(s)	1000, 1950, 2060
PpsI	GAGTC	3 cut(s)	1000, 1950, 2060
PpuMI	RGGWCCY	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	1816, 2148
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	1287, 1690
PspGI	CCWGG	2 cut(s)	1287, 1690
PspN4I	GGNNCC	7 cut(s)	296, 520, 559, 889, 907, 1055, 1652
PspPI	GGNCC	3 cut(s)	332, 474, 1685
PspPPI	RGGWCCY	1 cut(s)	332
PsrI	GAACNNNNNNTAC	2 cut(s)	658, 690
PstI	CTGCAG	3 cut(s)	340, 586, 1444
PstNI	CAGNNNCTG	2 cut(s)	151, 335
PsuI	RGATCY	5 cut(s)	518, 586, 887, 1053, 1219
PsyI	GACNNNGTC	1 cut(s)	1966
PvuII	CAGCTG	1 cut(s)	1020
RsaI	GTAC	4 cut(s)	258, 451, 1092, 1696
RsaNI	GTAC	4 cut(s)	257, 450, 1091, 1695
RseI	CAYNNNNRTG	1 cut(s)	1950
SacI	GAGCTC	2 cut(s)	1816, 2148
SaqAI	TTAA	8 cut(s)	239, 468, 633, 896, 1587, 1656, 1926, 2139
SatI	GCNGC	7 cut(s)	249, 582, 960, 1098, 1443, 1830, 1995
Sau96I	GGNCC	3 cut(s)	332, 474, 1685
SchI	GAGTC	3 cut(s)	1000, 1950, 2061
ScrFI	CCNGG	3 cut(s)	292, 1289, 1692
SduI	GDGCHC	3 cut(s)	1653, 1816, 2148
SfaNI	GCATC	4 cut(s)	420, 678, 910, 1197
SfcI	CTRYAG	3 cut(s)	336, 582, 1440
SfuI	TTCGAA	1 cut(s)	1624
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	1950
SmlI	CTYRAG	2 cut(s)	707, 1655
SmoI	CTYRAG	2 cut(s)	707, 1655
SphI	GCATGC	1 cut(s)	1879
Sse9I	AATT	5 cut(s)	138, 694, 853, 1162, 1502
SsiI	CCGC	5 cut(s)	499, 1097, 1397, 1513, 1736
SspI	AATATT	1 cut(s)	979
SspMI	CTAG	2 cut(s)	1826, 1893
SstI	GAGCTC	2 cut(s)	1816, 2148
StyD4I	CCNGG	3 cut(s)	290, 1287, 1690
StyI	CCWWGG	2 cut(s)	363, 1270
TaaI	ACNGT	4 cut(s)	130, 182, 623, 846
TaiI	ACGT	1 cut(s)	1981
TaqI	TCGA	7 cut(s)	389, 794, 1382, 1624, 1810, 1860, 2124
TasI	AATT	5 cut(s)	138, 694, 853, 1162, 1502
TatI	WGTACW	1 cut(s)	256
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	6 cut(s)	386, 461, 1313, 1379, 1462, 1592
Tru1I	TTAA	8 cut(s)	239, 468, 633, 896, 1587, 1656, 1926, 2139
Tru9I	TTAA	8 cut(s)	239, 468, 633, 896, 1587, 1656, 1926, 2139
TscAI	CASTG	4 cut(s)	90, 583, 1372, 1952
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	6 cut(s)	248, 581, 959, 1442, 1829, 1994
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	7 cut(s)	135, 440, 1061, 1434, 1515, 1738, 2037
TspGWI	ACGGA	2 cut(s)	117, 880
TspRI	CASTG	4 cut(s)	90, 583, 1372, 1952
Tth111I	GACNNNGTC	1 cut(s)	1966
Vha464I	CTTAAG	1 cut(s)	1655
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	1665
XapI	RAATTY	2 cut(s)	694, 1502
XceI	RCATGY	1 cut(s)	1879
XmiI	GTMKAC	1 cut(s)	1981
XmnI	GAANNNNTTC	1 cut(s)	1596
XspI	CTAG	2 cut(s)	1826, 1893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.