Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004289

Physical Location & Seq

Genomic Coordinates Reverse (-)

51748045 .. 51748475

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0412700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGAGGGCAGACTTAGTGGTTATGATGATATGCTTGTTGTGCTTGGTGGGTGTGGTTCCTATGGCAGAGGGGGATACAACTCCAAGTCAGTGCAAGCAGGAGAAGAATCTTCTCGTTGGTGCATGCAAACCAATTATTTTTGGACTTCAACCATCTGCAGCCTGCTGCCAACGAGTTAGGGTTACTCATGCCGAGTGTGTGTGTCCATACCTTAGTCCCAAGGTTGCGAATTTAATCAATGTGAAACGCAGCATCAAGCAAATCCAAGGTTGTGGAAGGACTGTTCCTCACAACTTCAAGTGTGGAAGTGTCACCACTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

108

Amino Acids

11.66

Weight (kDa)

8.9

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	20 - 102	2e-08	Probable lipid transfer

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28000 AT4G28000 AT4G28000 AT5G52882
fragaria_vesca	FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620
malus_domestica	MD01G1211300.v1.1 MD07G1282000.v1.1
prunus_persica	Prupe.2G303900_v2.0.a1 Prupe.2G303900_v2.0.a1
pyrus_communis	pycom01g22180 pycom07g25590
rosa_chinensis	RchiOBHm_Chr1g0379521
rosa_laevigata	RLG00000026395
rosa_multiflora	Rmu_sc0006761.1_g000024
rosa_roxburghii	Rroxscaffold_4G00280110
rosa_rugosa	Rorug01G0412600 Rorug01G0412700 Rorug01G0412800.1 Rorug01G0412900
rosa_samantha	Rh1AG435400 Rh1BG392800 Rh1CG405400 Rh1DG423600
rosa_wichuraiana	Rw1G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	152, 301
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
ApeKI	GCWGC	3 cut(s)	161, 168, 252
ApoI	RAATTY	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	307
BbvI	GCAGC	3 cut(s)	155, 173, 264
BccI	CCATC	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	162, 169, 253
BlsI	GCNGC	3 cut(s)	163, 170, 254
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	222, 268
BseDI	CCNNGG	2 cut(s)	222, 268
BseXI	GCAGC	3 cut(s)	155, 173, 264
BslFI	GGGAC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	222, 268
BssT1I	CCWWGG	2 cut(s)	222, 268
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	98, 127, 166
BstDEI	CTNAG	2 cut(s)	16, 215
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	155, 173, 264
BstXI	CCANNNNNNTGG	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	98, 127, 166
CviAII	CATG	2 cut(s)	126, 191
CviJI	RGCY	1 cut(s)	164
CviKI_1	RGCY	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	16, 215
Eco130I	CCWWGG	2 cut(s)	222, 268
EcoT14I	CCWWGG	2 cut(s)	222, 268
ErhI	CCWWGG	2 cut(s)	222, 268
FaeI	CATG	2 cut(s)	129, 194
FaiI	YATR	7 cut(s)	26, 34, 65, 127, 192, 211, 325
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	2 cut(s)	125, 190
Fnu4HI	GCNGC	3 cut(s)	162, 169, 253
Fsp4HI	GCNGC	3 cut(s)	162, 169, 253
GluI	GCNGC	3 cut(s)	162, 169, 253
Hin1II	CATG	2 cut(s)	129, 194
HinfI	GANTC	1 cut(s)	109
HphI	GGTGA	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	96, 125, 129, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	16, 215
Hsp92II	CATG	2 cut(s)	129, 194
LpnPI	CCDG	2 cut(s)	86, 178
Lsp1109I	GCAGC	3 cut(s)	155, 173, 264
LweI	GCATC	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	184, 313
MboII	GAAGA	2 cut(s)	104, 118
MluCI	AATT	2 cut(s)	135, 232
MnlI	CCTC	2 cut(s)	64, 300
MseI	TTAA	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	129, 194
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	129
PaeI	GCATGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	163, 170, 254
PspN4I	GGNNCC	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	3 cut(s)	162, 169, 253
SetI	ASST	3 cut(s)	216, 228, 274
SfaNI	GCATC	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	159
SphI	GCATGC	1 cut(s)	129
Sse9I	AATT	2 cut(s)	135, 232
StyI	CCWWGG	2 cut(s)	222, 268
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	2 cut(s)	135, 232
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	161, 168, 252
Tsp45I	GTSAC	1 cut(s)	313
TspRI	CASTG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.