Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004289

Physical Location & Seq

Genomic Coordinates Reverse (-)

51750405 .. 51767335

Gene Structure 16931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0412900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCCGGAAGAAAGAAATGGATGGGCATCCATGCAGCTCTCATGATGATCACGACGATTCTCCTTGCTGCTACTGTTTCCATGGCGGATGGTGATGCAGTCGTACCAGCCGAAAAATCCGAACTGCACAAGTGGTTCAACAACAATGTGAAGCCGTTCAAAGAACAAAAGTCGCTTGACGCTGCCCTTGTCACGGCGGAGGAGGGTGCGAAAGTTGTGAAGGTCATGCAAGATGGGGGAGACTACAAGAAAATCATGGAGGCGATTGATAACATTCCGGCCGGAAACACTAAACGTGTAATTGTATACATTGGAGGGGGTACCTACAATGAGAAAATAACAATTCCAAAAAACAAACCATTTGTCACATTAGTTGGGGATTCAAAAAACATTCCGAATTTGACATATTCCGGCGATGCCGCCAAATATGGGACGGTGAATAGTGCTACATTGGCAGTGGAATCCGACTACTTCACTGCTGCTAACTTAAATATCATAAATTCCTCGCCAAAACCAGATGGAAAAAGAGAAGGGGCACAAGCAGTTGCCTTGAGGGTGTCCGGGACCAAGGCCGCATTGTACAATTGCAAAATGTTTGGATTTCAGGACACCCTTTGTGATGATCAAGGCTATCATTTCTTCAAGGATTGCTACGTTGAAGGAACTGTAGATTTCATCTTCGGAAGAGGAAAATCTCTCTATCTGAACACACATTTACATGTGCTAGGGGACAACGGAATGACGGTGATAACGGCACAGGCAAGGGAAGGTGAAGAGGACAACGGATACTCATTTGTTCACTGCAACATAACCGGGACCGGCAATGGCACATATTTGGGCAGGGCTTGGAGAGCTGCTCCCAAGGTGTTGTTTGCCTACACCAACATGGGAGAAGTTGTCAAGCCAGAAGGATGGACTGACAATTTCCACCCCGAATACGACAACAAAGTTCAATTTGGAGAGTACAAGAATACTGGTCCAGGTTCAAGCATGAGTAAGAGAGTGAAATTCACAAAAGAGCTGAGCGATGAAGATGCCAAACCTTTCATCAGCCTAGGCTTTATTGAGGGTTCCAAATGGTTGCTTCCTCCTCCTAATCCAAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

369

Amino Acids

40.37

Weight (kDa)

7.63

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	75 - 357	2.5e-60	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28000 AT4G28000 AT4G28000 AT5G52882
fragaria_vesca	FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620
malus_domestica	MD01G1211300.v1.1 MD07G1282000.v1.1
prunus_persica	Prupe.2G303900_v2.0.a1 Prupe.2G303900_v2.0.a1
pyrus_communis	pycom01g22180 pycom07g25590
rosa_chinensis	RchiOBHm_Chr1g0379521
rosa_laevigata	RLG00000026395
rosa_multiflora	Rmu_sc0006761.1_g000024
rosa_roxburghii	Rroxscaffold_4G00280110
rosa_rugosa	Rorug01G0412600 Rorug01G0412700 Rorug01G0412800.1 Rorug01G0412900
rosa_samantha	Rh1AG435400 Rh1BG392800 Rh1CG405400 Rh1DG423600
rosa_wichuraiana	Rw1G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	4 cut(s)	86, 197, 420, 573
AcoI	YGGCCR	2 cut(s)	3, 279
AcsI	RAATTY	3 cut(s)	397, 499, 1007
AfaI	GTAC	4 cut(s)	105, 322, 581, 965
AfiI	CCNNNNNNNGG	2 cut(s)	193, 429
AflIII	ACRYGT	2 cut(s)	295, 718
AgsI	TTSAA	7 cut(s)	139, 160, 384, 643, 659, 953, 987
AjnI	CCWGG	1 cut(s)	979
AluBI	AGCT	3 cut(s)	38, 854, 1021
AluI	AGCT	3 cut(s)	38, 854, 1021
Alw26I	GTCTC	1 cut(s)	234
AoxI	GGCC	3 cut(s)	3, 279, 570
ApeKI	GCWGC	5 cut(s)	35, 68, 182, 479, 854
ApoI	RAATTY	3 cut(s)	397, 499, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp700I	GAANNNNTTC	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	320
AspA2I	CCTAGG	1 cut(s)	1054
AspS9I	GGNCC	3 cut(s)	564, 816, 977
AsuC2I	CCSGG	2 cut(s)	562, 814
AsuHPI	GGTGA	4 cut(s)	104, 448, 757, 782
AvaII	GGWCC	3 cut(s)	564, 816, 977
AvrII	CCTAGG	1 cut(s)	1054
BaeGI	GKGCMC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	320
BbvI	GCAGC	5 cut(s)	47, 55, 169, 466, 841
BccI	CCATC	5 cut(s)	16, 83, 227, 512, 906
BceAI	ACGGC	3 cut(s)	139, 210, 768
BcgI	CGANNNNNNTGC	2 cut(s)	1016, 1050
BciT130I	CCWGG	1 cut(s)	981
BciVI	GTATCC	1 cut(s)	779
BclI	TGATCA	2 cut(s)	48, 622
BcnI	CCSGG	2 cut(s)	562, 814
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	2 cut(s)	725, 1055
BfmI	CTRYAG	1 cut(s)	666
BfuI	GTATCC	1 cut(s)	779
BisI	GCNGC	7 cut(s)	36, 69, 183, 420, 480, 573, 855
BlnI	CCTAGG	1 cut(s)	1054
BlpI	GCTNAGC	1 cut(s)	1022
BlsI	GCNGC	7 cut(s)	37, 70, 184, 421, 481, 574, 856
Bme1390I	CCNGG	3 cut(s)	562, 814, 981
Bme18I	GGWCC	3 cut(s)	564, 816, 977
BmgT120I	GGNCC	3 cut(s)	564, 816, 977
BmiI	GGNNCC	4 cut(s)	322, 565, 817, 1072
BmrFI	CCNGG	3 cut(s)	562, 814, 981
BmsI	GCATC	4 cut(s)	36, 85, 406, 1024
BplI	GAGNNNNNCTC	2 cut(s)	841, 873
Bpu1102I	GCTNAGC	1 cut(s)	1022
BpuEI	CTTGAG	1 cut(s)	571
BpuMI	CCSGG	2 cut(s)	562, 814
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	4 cut(s)	81, 567, 861, 1054
BsaXI	ACNNNNNCTCC	2 cut(s)	882, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 429
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	1 cut(s)	979
Bse3DI	GCAATG	1 cut(s)	829
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	4 cut(s)	81, 567, 861, 1054
BseGI	GGATG	4 cut(s)	27, 27, 94, 917
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	193, 429
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	1013
BseNI	ACTGG	1 cut(s)	979
BseRI	GAGGAG	2 cut(s)	215, 1080
BseSI	GKGCMC	1 cut(s)	538
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	5 cut(s)	47, 55, 169, 466, 841
BsgI	GTGCAG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	5, 281, 572
BshNI	GGYRCC	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	7 cut(s)	6, 278, 282, 411, 561, 813, 819
BslFI	GGGAC	4 cut(s)	445, 577, 743, 829
BslI	CCNNNNNNNGG	2 cut(s)	193, 429
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	4 cut(s)	445, 577, 743, 829
BsnI	GGCC	3 cut(s)	5, 281, 572
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	2 cut(s)	48, 622
Bsp1720I	GCTNAGC	1 cut(s)	1022
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	4 cut(s)	86, 197, 420, 573
BspANI	GGCC	3 cut(s)	5, 281, 572
BspCNI	CTCAG	1 cut(s)	1014
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	4 cut(s)	322, 565, 817, 1072
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	829
BsrFI	RCCGGY	1 cut(s)	818
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	979
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	4 cut(s)	81, 567, 861, 1054
BssMI	GATC	2 cut(s)	48, 622
BssNAI	GTATAC	1 cut(s)	307
BssT1I	CCWWGG	4 cut(s)	81, 567, 861, 1054
Bst1107I	GTATAC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	4 cut(s)	76, 436, 667, 745
Bst6I	CTCTTC	2 cut(s)	679, 768
BstAUI	TGTACA	1 cut(s)	579
BstDEI	CTNAG	1 cut(s)	1022
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	4 cut(s)	27, 27, 94, 917
BstKTI	GATC	2 cut(s)	51, 625
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	2 cut(s)	48, 622
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 851
BstNI	CCWGG	1 cut(s)	981
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	560, 812, 979
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	5 cut(s)	47, 55, 169, 466, 841
BstXI	CCANNNNNNTGG	1 cut(s)	912
BstZ17I	GTATAC	1 cut(s)	307
BstZI	CGGCCG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	779
BsuRI	GGCC	3 cut(s)	5, 281, 572
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	2 cut(s)	429, 1041
BtsCI	GGATG	4 cut(s)	27, 27, 94, 917
BtsI	GCAGTG	3 cut(s)	462, 474, 799
BtsIMutI	CAGTG	3 cut(s)	462, 474, 799
CciI	TCATGA	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	818
Cfr13I	GGNCC	3 cut(s)	564, 816, 977
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	4 cut(s)	104, 321, 580, 964
CviAII	CATG	8 cut(s)	32, 43, 82, 226, 256, 719, 886, 991
CviQI	GTAC	4 cut(s)	104, 321, 580, 964
DdeI	CTNAG	1 cut(s)	1022
DpnI	GATC	2 cut(s)	50, 624
DpnII	GATC	2 cut(s)	48, 622
EaeI	YGGCCR	2 cut(s)	3, 279
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	679, 768
EarI	CTCTTC	2 cut(s)	679, 768
EciI	GGCGGA	2 cut(s)	101, 212
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	4 cut(s)	81, 567, 861, 1054
Eco47I	GGWCC	3 cut(s)	564, 816, 977
Eco52I	CGGCCG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	979
EcoT14I	CCWWGG	4 cut(s)	81, 567, 861, 1054
ErhI	CCWWGG	4 cut(s)	81, 567, 861, 1054
FaeI	CATG	8 cut(s)	35, 46, 85, 229, 259, 722, 889, 994
FaqI	GGGAC	4 cut(s)	445, 577, 743, 829
FatI	CATG	8 cut(s)	31, 42, 81, 225, 255, 718, 885, 990
FbaI	TGATCA	2 cut(s)	48, 622
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	7 cut(s)	36, 69, 183, 420, 480, 573, 855
FokI	GGATG	4 cut(s)	14, 34, 101, 924
Fsp4HI	GCNGC	7 cut(s)	36, 69, 183, 420, 480, 573, 855
FspBI	CTAG	2 cut(s)	725, 1055
GluI	GCNGC	7 cut(s)	36, 69, 183, 420, 480, 573, 855
HaeIII	GGCC	3 cut(s)	5, 281, 572
HapII	CCGG	7 cut(s)	6, 278, 282, 411, 561, 813, 819
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	8 cut(s)	35, 46, 85, 229, 259, 722, 889, 994
HinfI	GANTC	3 cut(s)	58, 380, 461
HpaII	CCGG	7 cut(s)	6, 278, 282, 411, 561, 813, 819
HphI	GGTGA	4 cut(s)	104, 448, 757, 782
Hpy166II	GTNNAC	2 cut(s)	307, 799
Hpy188I	TCNGA	5 cut(s)	121, 396, 466, 683, 705
Hpy188III	TCNNGA	3 cut(s)	43, 52, 605
Hpy8I	GTNNAC	2 cut(s)	307, 799
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	5 cut(s)	214, 524, 653, 761, 902
HpyCH4III	ACNGT	4 cut(s)	76, 436, 667, 745
HpyCH4IV	ACGT	2 cut(s)	295, 654
HpyCH4V	TGCA	6 cut(s)	35, 98, 127, 229, 588, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 851
HpyF3I	CTNAG	1 cut(s)	1022
HpySE526I	ACGT	2 cut(s)	295, 654
Hsp92II	CATG	8 cut(s)	35, 46, 85, 229, 259, 722, 889, 994
KpnI	GGTACC	1 cut(s)	324
Ksp22I	TGATCA	2 cut(s)	48, 622
Kzo9I	GATC	2 cut(s)	48, 622
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	5 cut(s)	47, 55, 169, 466, 841
LweI	GCATC	4 cut(s)	36, 85, 406, 1024
MaeI	CTAG	2 cut(s)	725, 1055
MaeII	ACGT	2 cut(s)	295, 654
MaeIII	GTNAC	2 cut(s)	190, 364
MalI	GATC	2 cut(s)	50, 624
MboI	GATC	2 cut(s)	48, 622
MboII	GAAGA	6 cut(s)	21, 631, 670, 696, 785, 1043
MfeI	CAATTG	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	8 cut(s)	300, 342, 397, 499, 583, 922, 953, 1007
MmeI	TCCRAC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	2 cut(s)	717, 884
MspI	CCGG	7 cut(s)	6, 278, 282, 411, 561, 813, 819
MspR9I	CCNGG	3 cut(s)	562, 814, 981
MunI	CAATTG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	981
MwoI	GCNNNNNNNGC	2 cut(s)	452, 851
NciI	CCSGG	2 cut(s)	562, 814
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	48, 622
NlaIII	CATG	8 cut(s)	35, 46, 85, 229, 259, 722, 889, 994
NlaIV	GGNNCC	4 cut(s)	322, 565, 817, 1072
NmuCI	GTSAC	2 cut(s)	190, 364
NspI	RCATGY	1 cut(s)	722
PagI	TCATGA	1 cut(s)	42
PciI	ACATGT	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	58, 380, 461
PfoI	TCCNGGA	1 cut(s)	560
PkrI	GCNGC	7 cut(s)	37, 70, 184, 421, 481, 574, 856
PscI	ACATGT	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	4 cut(s)	322, 565, 817, 1072
PspPI	GGNCC	3 cut(s)	564, 816, 977
RsaI	GTAC	4 cut(s)	105, 322, 581, 965
RsaNI	GTAC	4 cut(s)	104, 321, 580, 964
RseI	CAYNNNNRTG	2 cut(s)	717, 884
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	7 cut(s)	36, 69, 183, 420, 480, 573, 855
Sau3AI	GATC	2 cut(s)	48, 622
Sau96I	GGNCC	3 cut(s)	564, 816, 977
ScrFI	CCNGG	3 cut(s)	562, 814, 981
SduI	GDGCHC	1 cut(s)	538
SfaNI	GCATC	4 cut(s)	36, 85, 406, 1024
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	3 cut(s)	564, 816, 977
SmiMI	CAYNNNNRTG	2 cut(s)	717, 884
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	8 cut(s)	300, 342, 397, 499, 583, 922, 953, 1007
SsiI	CCGC	4 cut(s)	86, 197, 420, 573
SspMI	CTAG	2 cut(s)	725, 1055
StyD4I	CCNGG	3 cut(s)	560, 812, 979
StyI	CCWWGG	4 cut(s)	81, 567, 861, 1054
TaaI	ACNGT	4 cut(s)	76, 436, 667, 745
TaiI	ACGT	2 cut(s)	298, 657
TasI	AATT	8 cut(s)	300, 342, 397, 499, 583, 922, 953, 1007
TatI	WGTACW	2 cut(s)	579, 963
TauI	GCSGC	2 cut(s)	422, 575
TfiI	GAWTC	3 cut(s)	58, 380, 461
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	3 cut(s)	462, 481, 806
TseFI	GTSAC	2 cut(s)	190, 364
TseI	GCWGC	5 cut(s)	35, 68, 182, 479, 854
Tsp45I	GTSAC	2 cut(s)	190, 364
TspDTI	ATGAA	3 cut(s)	664, 1036, 1044
TspGWI	ACGGA	2 cut(s)	750, 798
TspRI	CASTG	3 cut(s)	462, 481, 806
VpaK11BI	GGWCC	3 cut(s)	564, 816, 977
XapI	RAATTY	3 cut(s)	397, 499, 1007
XceI	RCATGY	1 cut(s)	722
XmaJI	CCTAGG	1 cut(s)	1054
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	725, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.