Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004289

Physical Location & Seq

Genomic Coordinates Forward (+)

51739443 .. 51739934

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0412600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATGGATGTGCTACAAACTGAGCAGCGTGACTTTTTGTTTTATGGGCTTTGGGCCATATGGACGGAGCGGAATAACTTAGTCTGGAAGAAGAGAGGCTTTCAACCAATCCATATGATACAATGGACTGTGAGACAAATGGAGGACCATAATTTTCATCCGAAGGTGGGTATGCAGAAGAAGAGGGTTCGAATAAAATGGCAGAACCCCCCATCAGGTCGACTCAAAATAAATATAGATGGGGCTTATAAAGCAGATAATGGTTGTGGGGGAATCGGTGTAGTAGCCAGGGATGATTTGGGTAGTTGTATTGCCGCTATTGCTAGACCTTTTGTACATGCGCACTCGACCCTTAATATGGAAGCGGAAACATGTAGAGCTGGTTTTCTTCTTGGTATCCACCAAGATTGGTTGGAAATTGACATTGAGAGCGACTCTTCCCCCTTTTGGTTGCTGCACTTTAGAGTAAGGAGAAGAATTTCTCGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

163

Amino Acids

19.1

Weight (kDa)

9.71

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	78 - 147	6.3e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28000 AT4G28000 AT4G28000 AT5G52882
fragaria_vesca	FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620
malus_domestica	MD01G1211300.v1.1 MD07G1282000.v1.1
prunus_persica	Prupe.2G303900_v2.0.a1 Prupe.2G303900_v2.0.a1
pyrus_communis	pycom01g22180 pycom07g25590
rosa_chinensis	RchiOBHm_Chr1g0379521
rosa_laevigata	RLG00000026395
rosa_multiflora	Rmu_sc0006761.1_g000024
rosa_roxburghii	Rroxscaffold_4G00280110
rosa_rugosa	Rorug01G0412600 Rorug01G0412700 Rorug01G0412800.1 Rorug01G0412900
rosa_samantha	Rh1AG435400 Rh1BG392800 Rh1CG405400 Rh1DG423600
rosa_wichuraiana	Rw1G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
Acc16I	TGCGCA	1 cut(s)	342
AccBSI	CCGCTC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	3 cut(s)	70, 315, 365
AcsI	RAATTY	1 cut(s)	477
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	4 cut(s)	167, 215, 358, 447
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	25, 454
ApoI	RAATTY	1 cut(s)	477
Asp700I	GAANNNNTTC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	54, 145
AsuII	TTCGAA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	145
BbvI	GCAGC	2 cut(s)	37, 441
BccI	CCATC	2 cut(s)	220, 233
BciT130I	CCWGG	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	3 cut(s)	26, 315, 455
BlsI	GCNGC	3 cut(s)	27, 316, 456
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	54, 145
BmrFI	CCNGG	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
Bpu14I	TTCGAA	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 215, 358, 447
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	13, 157, 298
BseLI	CCNNNNNNNGG	4 cut(s)	167, 215, 358, 447
BseMII	CTCAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	37, 441
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	56
BslI	CCNNNNNNNGG	4 cut(s)	167, 215, 358, 447
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	334
BspACI	CCGC	3 cut(s)	70, 315, 365
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	86, 176, 442
BstAUI	TGTACA	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	21, 79
BstF5I	GGATG	3 cut(s)	13, 157, 298
BstHHI	GCGC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 320
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	2 cut(s)	341, 375
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	37, 441
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	13, 157, 298
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	54, 145
Csp6I	GTAC	1 cut(s)	335
CspCI	CAANNNNNGTGG	2 cut(s)	389, 424
CviAII	CATG	2 cut(s)	338, 372
CviJI	RGCY	6 cut(s)	49, 56, 99, 245, 287, 380
CviKI_1	RGCY	6 cut(s)	49, 56, 99, 245, 287, 380
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	2 cut(s)	21, 79
Eam1104I	CTCTTC	3 cut(s)	86, 176, 442
EarI	CTCTTC	3 cut(s)	86, 176, 442
Eco47I	GGWCC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	287
FaeI	CATG	2 cut(s)	341, 375
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	2 cut(s)	337, 371
FauNDI	CATATG	2 cut(s)	59, 114
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	26, 315, 455
FokI	GGATG	3 cut(s)	20, 144, 305
Fsp4HI	GCNGC	3 cut(s)	26, 315, 455
FspAI	RTGCGCAY	1 cut(s)	342
FspBI	CTAG	1 cut(s)	324
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	3 cut(s)	26, 315, 455
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	341, 375
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HinfI	GANTC	3 cut(s)	222, 273, 434
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	162, 486
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	175, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 320
HpyF3I	CTNAG	2 cut(s)	21, 79
Hsp92II	CATG	2 cut(s)	341, 375
HspAI	GCGC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	70, 201, 274, 301, 366
Lsp1109I	GCAGC	2 cut(s)	37, 441
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	29
MbiI	CCGCTC	1 cut(s)	70
MboII	GAAGA	7 cut(s)	100, 103, 190, 193, 380, 429, 486
MluCI	AATT	3 cut(s)	151, 417, 477
MlyI	GAGTC	2 cut(s)	216, 428
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	89, 136, 177, 480
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	251, 320
NdeI	CATATG	2 cut(s)	59, 114
NlaIII	CATG	2 cut(s)	341, 375
NmuCI	GTSAC	1 cut(s)	29
NsbI	TGCGCA	1 cut(s)	342
NspI	RCATGY	2 cut(s)	341, 375
NspV	TTCGAA	1 cut(s)	190
PciI	ACATGT	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	27, 316, 456
PleI	GAGTC	2 cut(s)	216, 428
PpsI	GAGTC	2 cut(s)	216, 428
PscI	ACATGT	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspPI	GGNCC	2 cut(s)	54, 145
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SalI	GTCGAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	26, 315, 455
Sau96I	GGNCC	2 cut(s)	54, 145
SchI	GAGTC	2 cut(s)	216, 428
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	5 cut(s)	168, 220, 331, 382, 491
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	151, 417, 477
SsiI	CCGC	3 cut(s)	70, 315, 365
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	190, 220, 347
TasI	AATT	3 cut(s)	151, 417, 477
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	25, 454
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	2 cut(s)	341, 375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.