Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004289

Physical Location & Seq

Genomic Coordinates Reverse (-)

67092770 .. 67099040

Gene Structure 6271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG405400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGTTATTAACAAGTGCTGCATATGTACATCTGAAACACTCTGACTTATCTAAACACACCCGGAACCTTTCACCTGCAAGCAGAGCTATTTTGCTATCAGGACCTGCAGAACTTTATCATCAAATGCTCGCCAAGGCTTTAGCTCATTTCTTTGAATCGAAGTTGCTGTTGTTGGATGTTACTGACTTTTCAATGAAGATGCAGAGTAAATATGGGTGTACCAAAAAAGAATCATTTAAGAGGCCCATCTCAGAGGTAACATTGGAGCGGATGTCTGGATTGTTTGGATCCTTCTCAATCCTCCCTTCAAGTGGAGAGACTAAAGGCACCTTATTACGGCCAAGCAGTGCTGCAGATCTCATATCAAGGAGTTCTGAAGGATCAACTAACCGTAGGACACTTAAAAGAAATGCCTCTTCTGTATCTGATATCAGTAGCATCAGTTCCAAAAGTGCTTCCACAAATTCAGCTCCTCTCAAGCGAATGAGTAGCTGGTGTTTTGACGAGAGACTTTTTCTACAATCACTTTACAAGGTCTTATCTTCCCTATCAGAAAGTGGCTCGATCATTTTATACCTCAGGGATGTGGAGAAGCTTTTTCTCCAATCAGGACGGTTATACAATTTGTTCAGTAAAATGTTGAAGAAACTATCAGGATCCGTGTTAATACTTGGTTCCCGAATGTTAGATGCTGAAGATGATTGCAAAGAAGTAGATGAGAGGCTTGCTGCTTTGTTCACATACAATATTGAGATCACCCCCCCAGACGATGAGACTCATCTCGTCAGCTGGAAAGCCCAACTGGAAGAGGACATGAAGAGGATCCAGTTTCAAGATAATAAAAACCACATAGCTGAGGTACTTGCGGCAAATGATCTTGAATGTGATGATCTTGGTTCAATCTGCCATGCAGACACAATGGTTCTCAGCAATTACATAGAAGAAATCGTAGTTTCAGCGATATCTTATCATTTGATGCAGAACAAAGATCCAGAGTATCGTAATGGAAAGCTTGTTATATCATCAACGAGTTTGTCCCATGGGCTGAGTATATTCCAGGAGGGAAAATGTGGCGACAAAGATTCTCTGAAACTGGAGACGTCCAACAAGAAAACTGAGGGGGAAGAGGCTGTCAGTGCAAAGACTGAATCGAAGTCTGAAACAGCGGAGAAATCTGACACCAAAAATGAAGCAGAGAAATCTGGCTCTGCAGCAAAGAAGGAAAGCGAGAATCCACCTCCACCAAAAGTTGAAGTTCCTCCAGACAATGAATTTGAGAAGCGGATAAGGCCAGAGGTTATCCCTCCAAATGAGATTGGAGTGTCCTTTGCAGATATTGGTGCATTGGATGAGATTAAAGAATCACTTCAGGAGTTAGTCATGCTCCCTCTTCGAAGACCAGACCTTTTCAAAGGAGGGCTCCTTAAGCCTTGTAGAGGCATACTGCTTTTTGGCCCTCCTGGTACTGGAAAAACAATGCTCGCGAAGGCCATCGCAAGTGAAGCGGGAGCAAGTTTCATCAACGTCTCCATGTCAACAATCACTTCAAAATGGTTTGGAGAAGACGAAAAGAATGTTCGAGCTCTCTTCACACTAGCAGCAAAGGTCTCGCCAACTATTATCTTTGTCGACGAGGTTGACAGCATGCTTGGGCAGAGAACTAGAGTTGGGGAGCATGAGGCGATGAGGAAGATTAAAAATGAGTTTATGGCCCACTGGGATGGACTCTTGACAAAGTCCGGAGAGCGTATACTTGTTCTCGCTGCAACCAACAGGCCATTTGATCTTGATGAAGCAATCATTAGGCGTTTTGAGCGCAGAGTCATGGTTGGCCTTCCCTCTGTTGAGAACAGGGAAATGATCTTGAAAACTCTTCTTGCAAAAGAAAAGGTCGACGATTTAGACTTCAAGGAGCTCGCAACCATGACAGAAGGATATAGTGGAAGTGATCTTAAGAACTTATGTGTGACAGCAGCTTATCGACCTGTAAGGGAGCTTATACAACAGGAAAGATTGAAGGATAAGAAAAAAAAGAAGAAAGCCGAAGAAGGCAAAAGCACAGAAGATGCTTCAGACTCGAAAGAAGAAGAAGAGAAAGAGGAGCACGTAATTACTCTAAGGTCATTAAGCATGGAAGATATGAGGCAAGCAAAGAATCAGGTTGCTGCAAGTTTCGCTGCAGAGGGATCAGTAATGAGTGAGCTGAAACAGTGGAATGACTTGTATGGAGAAGGCGGCTCAAGGAAGAAGGAACAATTGACTTATTTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

757

Amino Acids

84.4

Weight (kDa)

6.06

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	293 - 353	2.5e-36	Domain of unknown function (DUF7751)
AAA	PF00004	481 - 611	7.6e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	633 - 674	1.2e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28000 AT4G28000 AT4G28000 AT5G52882
fragaria_vesca	FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620 FvH4_7g30620
malus_domestica	MD01G1211300.v1.1 MD07G1282000.v1.1
prunus_persica	Prupe.2G303900_v2.0.a1 Prupe.2G303900_v2.0.a1
pyrus_communis	pycom01g22180 pycom07g25590
rosa_chinensis	RchiOBHm_Chr1g0379521
rosa_laevigata	RLG00000026395
rosa_multiflora	Rmu_sc0006761.1_g000024
rosa_roxburghii	Rroxscaffold_4G00280110
rosa_rugosa	Rorug01G0412600 Rorug01G0412700 Rorug01G0412800.1 Rorug01G0412900
rosa_samantha	Rh1AG435400 Rh1BG392800 Rh1CG405400 Rh1DG423600
rosa_wichuraiana	Rw1G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
AatII	GACGTC	1 cut(s)	1103
Acc36I	ACCTGC	2 cut(s)	82, 112
AccB1I	GGYRCC	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	268
AccI	GTMKAC	3 cut(s)	1629, 1750, 1893
AccII	CGCG	1 cut(s)	1484
AccIII	TCCGGA	1 cut(s)	1739
AciI	CCGC	6 cut(s)	268, 866, 1166, 1282, 1505, 2235
AclWI	GGATC	9 cut(s)	282, 295, 388, 651, 664, 817, 830, 983, 2194
AcoI	YGGCCR	1 cut(s)	338
AcsI	RAATTY	2 cut(s)	463, 1271
AcuI	CTGAAG	4 cut(s)	396, 714, 1352, 2055
AcyI	GRCGYC	1 cut(s)	1100
AfaI	GTAC	4 cut(s)	27, 220, 861, 1465
AfiI	CCNNNNNNNGG	4 cut(s)	311, 336, 1436, 1466
AflII	CTTAAG	2 cut(s)	1424, 1952
AjnI	CCWGG	2 cut(s)	1056, 1459
Alw21I	GWGCWC	3 cut(s)	1585, 1917, 2106
Alw26I	GTCTC	6 cut(s)	311, 502, 767, 1091, 1531, 1612
AlwI	GGATC	9 cut(s)	282, 295, 388, 651, 664, 817, 830, 983, 2194
AlwNI	CAGNNNCTG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	1739
AoxI	GGCC	8 cut(s)	242, 338, 1289, 1453, 1488, 1710, 1775, 1831
ApeKI	GCWGC	9 cut(s)	17, 350, 728, 1211, 1598, 1763, 1973, 2165, 2177
ApoI	RAATTY	2 cut(s)	463, 1271
ArsI	GACNNNNNNTTYG	2 cut(s)	1256, 1288
Asp700I	GAANNNNTTC	1 cut(s)	1365
AspLEI	GCGC	1 cut(s)	1818
AspS9I	GGNCC	4 cut(s)	101, 243, 1454, 1711
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	63, 748
AsuII	TTCGAA	1 cut(s)	1393
AvaII	GGWCC	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	578
BamHI	GGATCC	3 cut(s)	287, 656, 822
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	3 cut(s)	1422, 1585, 1917
BbsI	GAAGAC	2 cut(s)	1402, 1569
Bbv12I	GWGCWC	3 cut(s)	1585, 1917, 2106
BbvCI	CCTCAGC	1 cut(s)	855
BbvI	GCAGC	9 cut(s)	4, 337, 715, 1223, 1610, 1750, 1985, 2152, 2164
BccI	CCATC	3 cut(s)	254, 1499, 1715
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	1590, 1624
BciT130I	CCWGG	2 cut(s)	1058, 1461
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	6 cut(s)	311, 502, 767, 1091, 1531, 1612
BfaI	CTAG	2 cut(s)	1595, 1662
BfmI	CTRYAG	4 cut(s)	105, 351, 1209, 2178
BfrI	CTTAAG	2 cut(s)	1424, 1952
BfuAI	ACCTGC	2 cut(s)	82, 112
BglII	AGATCT	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	61, 1058, 1461
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	4 cut(s)	101, 243, 1454, 1711
BmiI	GGNNCC	7 cut(s)	65, 289, 328, 658, 676, 824, 1421
BmrFI	CCNGG	3 cut(s)	61, 1058, 1461
BmrI	ACTGGG	1 cut(s)	1726
BmsI	GCATC	5 cut(s)	189, 447, 679, 966, 2056
BmuI	ACTGGG	1 cut(s)	1726
BpiI	GAAGAC	2 cut(s)	1402, 1569
BpmI	CTGGAG	2 cut(s)	1115, 1245
Bpu10I	CCTNAGC	1 cut(s)	855
Bpu14I	TTCGAA	1 cut(s)	1393
BpuEI	CTTGAG	2 cut(s)	461, 2224
BpuMI	CCSGG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	2107
BsaHI	GRCGYC	1 cut(s)	1100
BsaI	GGTCTC	1 cut(s)	1612
BsaJI	CCNNGG	2 cut(s)	132, 1039
BsaWI	WCCGGW	1 cut(s)	1739
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 336, 1436, 1466
Bse1I	ACTGG	5 cut(s)	807, 826, 1098, 1471, 1721
Bse21I	CCTNAGG	1 cut(s)	578
BseAI	TCCGGA	1 cut(s)	1739
BseBI	CCWGG	2 cut(s)	1058, 1461
BseDI	CCNNGG	2 cut(s)	132, 1039
BseGI	GGATG	5 cut(s)	181, 276, 589, 1354, 1726
BseLI	CCNNNNNNNGG	4 cut(s)	311, 336, 1436, 1466
BseMII	CTCAG	6 cut(s)	264, 592, 846, 940, 1037, 1107
BseNI	ACTGG	5 cut(s)	807, 826, 1098, 1471, 1721
BseRI	GAGGAG	2 cut(s)	462, 2114
BseXI	GCAGC	9 cut(s)	4, 337, 715, 1223, 1610, 1750, 1985, 2152, 2164
Bsh1236I	CGCG	1 cut(s)	1484
BshFI	GGCC	8 cut(s)	244, 340, 1291, 1455, 1490, 1712, 1777, 1833
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	3 cut(s)	1585, 1917, 2106
BsiSI	CCGG	2 cut(s)	61, 1740
BslFI	GGGAC	1 cut(s)	1021
BslI	CCNNNNNNNGG	4 cut(s)	311, 336, 1436, 1466
BsmAI	GTCTC	6 cut(s)	311, 502, 767, 1091, 1531, 1612
BsmBI	CGTCTC	2 cut(s)	1091, 1531
BsmFI	GGGAC	1 cut(s)	1021
BsnI	GGCC	8 cut(s)	244, 340, 1291, 1455, 1490, 1712, 1777, 1833
Bso31I	GGTCTC	1 cut(s)	1612
Bsp119I	TTCGAA	1 cut(s)	1393
Bsp1286I	GDGCHC	4 cut(s)	1422, 1585, 1917, 2106
Bsp13I	TCCGGA	1 cut(s)	1739
Bsp1407I	TGTACA	1 cut(s)	25
Bsp19I	CCATGG	1 cut(s)	1039
Bsp68I	TCGCGA	1 cut(s)	1484
BspACI	CCGC	6 cut(s)	268, 866, 1166, 1282, 1505, 2235
BspANI	GGCC	8 cut(s)	244, 340, 1291, 1455, 1490, 1712, 1777, 1833
BspCNI	CTCAG	6 cut(s)	263, 591, 847, 939, 1038, 1108
BspEI	TCCGGA	1 cut(s)	1739
BspFNI	CGCG	1 cut(s)	1484
BspLI	GGNNCC	7 cut(s)	65, 289, 328, 658, 676, 824, 1421
BspMAI	CTGCAG	4 cut(s)	109, 355, 1213, 2182
BspMI	ACCTGC	2 cut(s)	82, 112
BspPI	GGATC	9 cut(s)	282, 295, 388, 651, 664, 817, 830, 983, 2194
BspT104I	TTCGAA	1 cut(s)	1393
BspT107I	GGYRCC	1 cut(s)	326
BspTI	CTTAAG	2 cut(s)	1424, 1952
BspTNI	GGTCTC	1 cut(s)	1612
BsrBI	CCGCTC	1 cut(s)	268
BsrGI	TGTACA	1 cut(s)	25
BsrI	ACTGG	5 cut(s)	807, 826, 1098, 1471, 1721
BssECI	CCNNGG	2 cut(s)	132, 1039
BssNAI	GTATAC	1 cut(s)	1751
BssNI	GRCGYC	1 cut(s)	1100
BssT1I	CCWWGG	2 cut(s)	132, 1039
Bst1107I	GTATAC	1 cut(s)	1751
Bst2UI	CCWGG	2 cut(s)	1058, 1461
Bst4CI	ACNGT	3 cut(s)	392, 615, 2211
Bst6I	CTCTTC	8 cut(s)	421, 801, 812, 1119, 1395, 1592, 1878, 2085
BstACI	GRCGYC	1 cut(s)	1100
BstAFI	CTTAAG	2 cut(s)	1424, 1952
BstAUI	TGTACA	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	2107
BstBI	TTCGAA	1 cut(s)	1393
BstC8I	GCNNGC	7 cut(s)	79, 129, 726, 1482, 1646, 1917, 2148
BstDEI	CTNAG	7 cut(s)	250, 578, 855, 926, 1046, 1116, 2117
BstDSI	CCRYGG	1 cut(s)	1039
BstENI	CCTNNNNNAGG	1 cut(s)	1434
BstF5I	GGATG	5 cut(s)	181, 276, 589, 1354, 1726
BstFNI	CGCG	1 cut(s)	1484
BstHHI	GCGC	1 cut(s)	1818
BstMAI	GTCTC	6 cut(s)	311, 502, 767, 1091, 1531, 1612
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 1136, 1288, 1426, 1502, 1813, 2174
BstNI	CCWGG	2 cut(s)	1058, 1461
BstNSI	RCATGY	1 cut(s)	1648
BstSCI	CCNGG	3 cut(s)	59, 1056, 1459
BstSFI	CTRYAG	4 cut(s)	105, 351, 1209, 2178
BstUI	CGCG	1 cut(s)	1484
BstV1I	GCAGC	9 cut(s)	4, 337, 715, 1223, 1610, 1750, 1985, 2152, 2164
BstV2I	GAAGAC	2 cut(s)	1402, 1569
BstX2I	RGATCY	5 cut(s)	287, 355, 656, 822, 988
BstXI	CCANNNNNNTGG	1 cut(s)	1721
BstYI	RGATCY	5 cut(s)	287, 355, 656, 822, 988
BstZ17I	GTATAC	1 cut(s)	1751
Bsu36I	CCTNAGG	1 cut(s)	578
BsuRI	GGCC	8 cut(s)	244, 340, 1291, 1455, 1490, 1712, 1777, 1833
BtgI	CCRYGG	1 cut(s)	1039
BtgZI	GCGATG	2 cut(s)	1477, 1697
BtsCI	GGATG	5 cut(s)	181, 276, 589, 1354, 1726
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	4 cut(s)	352, 1141, 1714, 2216
BtuMI	TCGCGA	1 cut(s)	1484
BveI	ACCTGC	2 cut(s)	82, 112
Cac8I	GCNNGC	7 cut(s)	79, 129, 726, 1482, 1646, 1917, 2148
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	1818
Cfr13I	GGNCC	4 cut(s)	101, 243, 1454, 1711
Csp6I	GTAC	4 cut(s)	26, 219, 860, 1464
CviQI	GTAC	4 cut(s)	26, 219, 860, 1464
DdeI	CTNAG	7 cut(s)	250, 578, 855, 926, 1046, 1116, 2117
EaeI	YGGCCR	1 cut(s)	338
Eam1104I	CTCTTC	8 cut(s)	421, 801, 812, 1119, 1395, 1592, 1878, 2085
EarI	CTCTTC	8 cut(s)	421, 801, 812, 1119, 1395, 1592, 1878, 2085
Ecl136II	GAGCTC	2 cut(s)	1583, 1915
Eco130I	CCWWGG	2 cut(s)	132, 1039
Eco24I	GRGCYC	3 cut(s)	1422, 1585, 1917
Eco31I	GGTCTC	1 cut(s)	1612
Eco32I	GATATC	2 cut(s)	430, 963
Eco47I	GGWCC	1 cut(s)	101
Eco53kI	GAGCTC	2 cut(s)	1583, 1915
Eco57I	CTGAAG	4 cut(s)	396, 714, 1352, 2055
Eco81I	CCTNAGG	1 cut(s)	578
EcoICRI	GAGCTC	2 cut(s)	1583, 1915
EcoNI	CCTNNNNNAGG	1 cut(s)	1434
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	1056, 1459
EcoRV	GATATC	2 cut(s)	430, 963
EcoT14I	CCWWGG	2 cut(s)	132, 1039
EcoT38I	GRGCYC	3 cut(s)	1422, 1585, 1917
ErhI	CCWWGG	2 cut(s)	132, 1039
Esp3I	CGTCTC	2 cut(s)	1091, 1531
FalI	AAGNNNNNCTT	2 cut(s)	1350, 1382
FaqI	GGGAC	1 cut(s)	1021
FauI	CCCGC	1 cut(s)	1498
FauNDI	CATATG	1 cut(s)	22
FblI	GTMKAC	3 cut(s)	1629, 1750, 1893
FokI	GGATG	5 cut(s)	188, 283, 596, 1361, 1733
FriOI	GRGCYC	3 cut(s)	1422, 1585, 1917
FspBI	CTAG	2 cut(s)	1595, 1662
GlaI	GCGC	1 cut(s)	1817
GsuI	CTGGAG	2 cut(s)	1115, 1245
HaeIII	GGCC	8 cut(s)	244, 340, 1291, 1455, 1490, 1712, 1777, 1833
HapII	CCGG	2 cut(s)	61, 1740
HhaI	GCGC	1 cut(s)	1818
Hin1I	GRCGYC	1 cut(s)	1100
Hin6I	GCGC	1 cut(s)	1816
HinP1I	GCGC	1 cut(s)	1816
HincII	GTYRAC	4 cut(s)	1536, 1630, 1639, 1894
HindII	GTYRAC	4 cut(s)	1536, 1630, 1639, 1894
HindIII	AAGCTT	2 cut(s)	593, 1010
HpaII	CCGG	2 cut(s)	61, 1740
HphI	GGTGA	2 cut(s)	63, 748
Hpy166II	GTNNAC	7 cut(s)	219, 738, 1536, 1630, 1639, 1751, 1894
Hpy8I	GTNNAC	7 cut(s)	219, 738, 1536, 1630, 1639, 1751, 1894
Hpy99I	CGWCG	2 cut(s)	1634, 1898
HpyCH4III	ACNGT	3 cut(s)	392, 615, 2211
HpyCH4IV	ACGT	3 cut(s)	1100, 1524, 2106
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 1136, 1288, 1426, 1502, 1813, 2174
HpyF3I	CTNAG	7 cut(s)	250, 578, 855, 926, 1046, 1116, 2117
HpySE526I	ACGT	3 cut(s)	1100, 1524, 2106
Hsp92I	GRCGYC	1 cut(s)	1100
HspAI	GCGC	1 cut(s)	1816
Kpn2I	TCCGGA	1 cut(s)	1739
LmnI	GCTCC	9 cut(s)	265, 475, 1389, 1425, 1508, 1672, 1912, 1993, 2101
Lsp1109I	GCAGC	9 cut(s)	4, 337, 715, 1223, 1610, 1750, 1985, 2152, 2164
LweI	GCATC	5 cut(s)	189, 447, 679, 966, 2056
MaeI	CTAG	2 cut(s)	1595, 1662
MaeII	ACGT	3 cut(s)	1100, 1524, 2106
MaeIII	GTNAC	3 cut(s)	178, 256, 1966
MbiI	CCGCTC	1 cut(s)	268
MfeI	CAATTG	1 cut(s)	2255
MflI	RGATCY	5 cut(s)	287, 355, 656, 822, 988
MhlI	GDGCHC	4 cut(s)	1422, 1585, 1917, 2106
MluCI	AATT	6 cut(s)	463, 622, 931, 1271, 2109, 2255
MlyI	GAGTC	4 cut(s)	769, 1719, 1830, 2069
MmeI	TCCRAC	2 cut(s)	153, 1128
MroI	TCCGGA	1 cut(s)	1739
MroXI	GAANNNNTTC	1 cut(s)	1365
MseI	TTAA	9 cut(s)	8, 237, 402, 665, 1356, 1425, 1695, 1953, 2126
MslI	CAYNNNNRTG	1 cut(s)	1719
MspA1I	CMGCKG	2 cut(s)	789, 1166
MspCI	CTTAAG	2 cut(s)	1424, 1952
MspI	CCGG	2 cut(s)	61, 1740
MspR9I	CCNGG	3 cut(s)	61, 1058, 1461
MunI	CAATTG	1 cut(s)	2255
MvaI	CCWGG	2 cut(s)	1058, 1461
MvnI	CGCG	1 cut(s)	1484
MwoI	GCNNNNNNNGC	7 cut(s)	83, 1136, 1288, 1426, 1502, 1813, 2174
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	1039
NdeI	CATATG	1 cut(s)	22
NlaIV	GGNNCC	7 cut(s)	65, 289, 328, 658, 676, 824, 1421
NmuCI	GTSAC	1 cut(s)	1966
NruI	TCGCGA	1 cut(s)	1484
NspI	RCATGY	1 cut(s)	1648
NspV	TTCGAA	1 cut(s)	1393
PaeI	GCATGC	1 cut(s)	1648
PaqCI	CACCTGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	1365
PfeI	GAWTC	7 cut(s)	155, 230, 1082, 1148, 1231, 1361, 2155
PflFI	GACNNNGTC	1 cut(s)	1735
PfoI	TCCNGGA	1 cut(s)	1056
PleI	GAGTC	4 cut(s)	769, 1719, 1829, 2069
PpsI	GAGTC	4 cut(s)	769, 1719, 1829, 2069
Ppu21I	YACGTR	1 cut(s)	2107
PpuMI	RGGWCCY	1 cut(s)	101
Psp124BI	GAGCTC	2 cut(s)	1585, 1917
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	1056, 1459
PspGI	CCWGG	2 cut(s)	1056, 1459
PspN4I	GGNNCC	7 cut(s)	65, 289, 328, 658, 676, 824, 1421
PspPI	GGNCC	4 cut(s)	101, 243, 1454, 1711
PspPPI	RGGWCCY	1 cut(s)	101
PsrI	GAACNNNNNNTAC	2 cut(s)	427, 459
PstI	CTGCAG	4 cut(s)	109, 355, 1213, 2182
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	5 cut(s)	287, 355, 656, 822, 988
PsyI	GACNNNGTC	1 cut(s)	1735
PvuII	CAGCTG	1 cut(s)	789
RruI	TCGCGA	1 cut(s)	1484
RsaI	GTAC	4 cut(s)	27, 220, 861, 1465
RsaNI	GTAC	4 cut(s)	26, 219, 860, 1464
RseI	CAYNNNNRTG	1 cut(s)	1719
SacI	GAGCTC	2 cut(s)	1585, 1917
SalI	GTCGAC	2 cut(s)	1628, 1892
SaqAI	TTAA	9 cut(s)	8, 237, 402, 665, 1356, 1425, 1695, 1953, 2126
Sau96I	GGNCC	4 cut(s)	101, 243, 1454, 1711
SchI	GAGTC	4 cut(s)	769, 1719, 1830, 2069
ScrFI	CCNGG	3 cut(s)	61, 1058, 1461
SduI	GDGCHC	4 cut(s)	1422, 1585, 1917, 2106
SfaNI	GCATC	5 cut(s)	189, 447, 679, 966, 2056
SfcI	CTRYAG	4 cut(s)	105, 351, 1209, 2178
SfuI	TTCGAA	1 cut(s)	1393
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	1719
SmlI	CTYRAG	4 cut(s)	476, 1424, 1952, 2239
SmoI	CTYRAG	4 cut(s)	476, 1424, 1952, 2239
SphI	GCATGC	1 cut(s)	1648
Sse9I	AATT	6 cut(s)	463, 622, 931, 1271, 2109, 2255
SsiI	CCGC	6 cut(s)	268, 866, 1166, 1282, 1505, 2235
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	2 cut(s)	1595, 1662
SstI	GAGCTC	2 cut(s)	1585, 1917
StyD4I	CCNGG	3 cut(s)	59, 1056, 1459
StyI	CCWWGG	2 cut(s)	132, 1039
TaaI	ACNGT	3 cut(s)	392, 615, 2211
TaiI	ACGT	3 cut(s)	1103, 1527, 2109
TaqI	TCGA	9 cut(s)	158, 563, 1151, 1393, 1579, 1629, 1893, 1981, 2078
TasI	AATT	6 cut(s)	463, 622, 931, 1271, 2109, 2255
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	2 cut(s)	869, 2238
TfiI	GAWTC	7 cut(s)	155, 230, 1082, 1148, 1231, 1361, 2155
Tru1I	TTAA	9 cut(s)	8, 237, 402, 665, 1356, 1425, 1695, 1953, 2126
Tru9I	TTAA	9 cut(s)	8, 237, 402, 665, 1356, 1425, 1695, 1953, 2126
TscAI	CASTG	4 cut(s)	352, 1141, 1721, 2216
TseFI	GTSAC	1 cut(s)	1966
TseI	GCWGC	9 cut(s)	17, 350, 728, 1211, 1598, 1763, 1973, 2165, 2177
Tsp45I	GTSAC	1 cut(s)	1966
TspDTI	ATGAA	6 cut(s)	209, 830, 1203, 1284, 1507, 1806
TspGWI	ACGGA	1 cut(s)	649
TspRI	CASTG	4 cut(s)	352, 1141, 1721, 2216
Tth111I	GACNNNGTC	1 cut(s)	1735
Vha464I	CTTAAG	2 cut(s)	1424, 1952
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	1434
XapI	RAATTY	2 cut(s)	463, 1271
XceI	RCATGY	1 cut(s)	1648
XmiI	GTMKAC	3 cut(s)	1629, 1750, 1893
XmnI	GAANNNNTTC	1 cut(s)	1365
XspI	CTAG	2 cut(s)	1595, 1662
ZraI	GACGTC	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.