Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015688

Physical Location & Seq

Genomic Coordinates Forward (+)

21542539 .. 21548293

Gene Structure 5755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTTCAGATCTTTCCTTCCAAAACTCTTAGAACTCCCACCACCTCAGATCGACTTCGGCTTGGACTTCCGTATTATAGAAAGTGTCGGTGGCCGTGTGTACAAGGCAATACATGATTCTGGAAGAATTATTGCTGTTAAAAAGATTCAAATTCCAGAAGATGGTTCAAATGAGAACCAGTATTGCAAATTTAGAAATATATATCTCTTAAACAATCACCATCCCCCCCACCATTTGGCGGGATCTTTGTGTATCCTGATCGAATTCTGGGGCAAATCAGACTGCTCGAAGGAACTAACACTGTTCAACGAGACAAAAACAAGAAGATTCACCATTCAGTTGTTGCAGGGACTACAATATTTACATGAACGTAAAATCGTGCACGGGAATATTAAGGGAAGAAATATTCTAGTTGATGCTTTTGGAGACATTAAGCTTGCTGATTTTGGTCTATCAGCATATTCGAACCTTTTGGGCGCTCAGTCTTCATCTGGATACAGACATGCTGTTGAAATCTTTCAACCCCTGCCTCATCTCGACCCATCTGCTGATATATGGTGTGTTGGGTGCATTATGATTGAGCTGACCACCGGAAAGGATCCATGGCGAAGAGATAGCTGGTCGAATTATATTTTGCCTAAGAAATTTTCTTTTCATGCGAAAAACTTTTTGCAAGAGTGTCTTCAATGGGAACAACAAGATTCGAGGCTACCCACATTTGTCTTGCTTCAGCATCCATTCTTAAATCCTGCATCAATTGAGGTCCGACCTACTCAACTACTTCCGAGGGAAAGCTTAGTTGCTGAAGTGCTATATTGTACCTCACCTTCACCAACTTACGCAGCTGTTGGTGGAGATCATTCTAGATTAATGCTAGATCAGAATAGCATTTCAGGAGAGGAGGGAGCTGCTGAACCTTCTCATACTGCTGAACCTCCTATAATGCAGAGACCTAATCAAGCCTTTGCACTTCAACATGGTGCCGGAGCTCCTGTCAGTTTAACTCTTGGTTCCAATGTTGGATCAACTCCCAGTACCAACTCGGAATCCATTTCCTTCCCTTTCGGTTCCGGTGTCACTTTTGTGTCCGAACCTAGTTCTCATTCCCCTACTACTTCCACCACATCCAGAAGTTCTTGTCCTAATTCTAAGTCCAATACTTCCGACTCCAAATCTATTTCGACACTTGTTCCTATTCTCGATCCAAATAGTACGTGTTTCCAAAAGGAGGCGTACGTACGTACACGTCGATCTGGGTTCCTTAAGTTCTTGTGTTTTTATTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

430

Amino Acids

47.7

Weight (kDa)

7.63

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 248	4.8e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	83 - 204	7.3e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13250 FvH4_7g13250 FvH4_7g13250 FvH4_7g13250
rosa_laevigata	RLG00000028335
rosa_multiflora	Rmu_sc0002244.1_g000032 Rmu_ssc0000172.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302940
rosa_rugosa	Rorug01G0228300
rosa_samantha	Rh1AG006000 Rh1AG241500 Rh1BG212700 Rh1CG225400 Rh1DG238900 Rh3BG284000
rosa_wichuraiana	Rw1G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	980
AccB7I	CCANNNNNTGG	2 cut(s)	161, 235
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	5 cut(s)	250, 593, 606, 1030, 1196
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	4 cut(s)	150, 188, 263, 644
AcuI	CTGAAG	2 cut(s)	713, 825
AfaI	GTAC	7 cut(s)	101, 820, 1036, 1213, 1235, 1239, 1243
AfiI	CCNNNNNNNGG	4 cut(s)	161, 235, 238, 1228
AflII	CTTAAG	1 cut(s)	1262
AflIII	ACRYGT	2 cut(s)	1214, 1244
AgsI	TTSAA	7 cut(s)	149, 168, 307, 512, 521, 686, 974
AjiI	CACGTC	1 cut(s)	1247
AleI	CACNNNNGTG	1 cut(s)	1082
AluBI	AGCT	7 cut(s)	436, 583, 618, 795, 845, 908, 989
AluI	AGCT	7 cut(s)	436, 583, 618, 795, 845, 908, 989
Alw21I	GWGCWC	2 cut(s)	384, 991
Alw26I	GTCTC	3 cut(s)	305, 420, 943
Alw44I	GTGCAC	1 cut(s)	380
AlwI	GGATC	5 cut(s)	250, 593, 606, 1030, 1196
AoxI	GGCC	1 cut(s)	91
ApaLI	GTGCAC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	842, 908
ApoI	RAATTY	4 cut(s)	150, 188, 263, 644
AseI	ATTAAT	1 cut(s)	869
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	763
AsuHPI	GGTGA	4 cut(s)	209, 322, 816, 822
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	763
BaeGI	GKGCMC	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	980
BanII	GRGCYC	1 cut(s)	991
BarI	GAAGNNNNNNTAC	2 cut(s)	811, 843
BbsI	GAAGAC	2 cut(s)	477, 674
Bbv12I	GWGCWC	2 cut(s)	384, 991
BbvI	GCAGC	2 cut(s)	854, 895
BccI	CCATC	3 cut(s)	155, 228, 550
BceAI	ACGGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciVI	GTATCC	2 cut(s)	263, 488
BcoDI	GTCTC	3 cut(s)	305, 420, 943
BfaI	CTAG	4 cut(s)	410, 864, 875, 1095
BfoI	RGCGCY	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	1262
BfuI	GTATCC	2 cut(s)	263, 488
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	2 cut(s)	843, 909
BlsI	GCNGC	2 cut(s)	844, 910
Bme18I	GGWCC	1 cut(s)	763
BmgBI	CACGTC	1 cut(s)	1247
BmgT120I	GGNCC	1 cut(s)	763
BmiI	GGNNCC	5 cut(s)	600, 982, 1012, 1069, 1259
BmrI	ACTGGG	1 cut(s)	1026
BmsI	GCATC	3 cut(s)	406, 742, 761
BmuI	ACTGGG	1 cut(s)	1026
BpiI	GAAGAC	2 cut(s)	477, 674
Bpu14I	TTCGAA	1 cut(s)	464
BsaAI	YACGTR	3 cut(s)	1215, 1237, 1241
BsaI	GGTCTC	1 cut(s)	943
BsaJI	CCNNGG	2 cut(s)	602, 785
BsaWI	WCCGGW	2 cut(s)	590, 1070
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 235, 238, 1228
Bse1I	ACTGG	2 cut(s)	178, 1032
BseDI	CCNNGG	2 cut(s)	602, 785
BseGI	GGATG	3 cut(s)	220, 733, 1124
BseLI	CCNNNNNNNGG	4 cut(s)	161, 235, 238, 1228
BseMII	CTCAG	2 cut(s)	59, 494
BseNI	ACTGG	2 cut(s)	178, 1032
BseRI	GAGGAG	1 cut(s)	914
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	854, 895
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	980
BsiHKAI	GWGCWC	2 cut(s)	384, 991
BsiSI	CCGG	3 cut(s)	591, 984, 1071
BsiWI	CGTACG	2 cut(s)	1233, 1237
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	4 cut(s)	161, 235, 238, 1228
BsmAI	GTCTC	3 cut(s)	305, 420, 943
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	943
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	384, 991
Bsp1407I	TGTACA	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	58, 493
BspLI	GGNNCC	5 cut(s)	600, 982, 1012, 1069, 1259
BspPI	GGATC	5 cut(s)	250, 593, 606, 1030, 1196
BspT104I	TTCGAA	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	980
BspTI	CTTAAG	1 cut(s)	1262
BspTNI	GGTCTC	1 cut(s)	943
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	178, 1032
BssECI	CCNNGG	2 cut(s)	602, 785
BssT1I	CCWWGG	1 cut(s)	602
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	604
BstAFI	CTTAAG	1 cut(s)	1262
BstAUI	TGTACA	1 cut(s)	99
BstBAI	YACGTR	3 cut(s)	1215, 1237, 1241
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	6 cut(s)	28, 45, 480, 639, 796, 1149
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	220, 733, 1124
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstMAI	GTCTC	3 cut(s)	305, 420, 943
BstNSI	RCATGY	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	384
BstSNI	TACGTA	2 cut(s)	1237, 1241
BstV1I	GCAGC	2 cut(s)	854, 895
BstV2I	GAAGAC	2 cut(s)	477, 674
BstX2I	RGATCY	3 cut(s)	8, 242, 598
BstYI	RGATCY	3 cut(s)	8, 242, 598
BsuI	GTATCC	2 cut(s)	263, 488
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	1247
BtsCI	GGATG	3 cut(s)	220, 733, 1124
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	763
Csp6I	GTAC	7 cut(s)	100, 819, 1035, 1212, 1234, 1238, 1242
CviAII	CATG	6 cut(s)	113, 365, 503, 603, 656, 977
CviQI	GTAC	7 cut(s)	100, 819, 1035, 1212, 1234, 1238, 1242
DdeI	CTNAG	6 cut(s)	28, 45, 480, 639, 796, 1149
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Ecl136II	GAGCTC	1 cut(s)	989
Eco105I	TACGTA	2 cut(s)	1237, 1241
Eco130I	CCWWGG	1 cut(s)	602
Eco24I	GRGCYC	1 cut(s)	991
Eco31I	GGTCTC	1 cut(s)	943
Eco47I	GGWCC	1 cut(s)	763
Eco53kI	GAGCTC	1 cut(s)	989
Eco57I	CTGAAG	2 cut(s)	713, 825
EcoICRI	GAGCTC	1 cut(s)	989
EcoRI	GAATTC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	602
EcoT38I	GRGCYC	1 cut(s)	991
ErhI	CCWWGG	1 cut(s)	602
FaeI	CATG	6 cut(s)	116, 368, 506, 606, 659, 980
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	6 cut(s)	112, 364, 502, 602, 655, 976
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	843, 909
FokI	GGATG	3 cut(s)	207, 720, 1111
FriOI	GRGCYC	1 cut(s)	991
Fsp4HI	GCNGC	2 cut(s)	843, 909
FspBI	CTAG	4 cut(s)	410, 864, 875, 1095
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	2 cut(s)	843, 909
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	3 cut(s)	591, 984, 1071
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	6 cut(s)	116, 368, 506, 606, 659, 980
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HindIII	AAGCTT	2 cut(s)	434, 793
HinfI	GANTC	6 cut(s)	116, 145, 327, 701, 1046, 1166
HpaII	CCGG	3 cut(s)	591, 984, 1071
HphI	GGTGA	4 cut(s)	209, 322, 816, 822
Hpy166II	GTNNAC	3 cut(s)	100, 382, 1244
Hpy188I	TCNGA	9 cut(s)	8, 48, 280, 767, 786, 882, 1045, 1090, 1165
Hpy188III	TCNNGA	9 cut(s)	120, 155, 256, 492, 536, 864, 894, 1128, 1199
Hpy8I	GTNNAC	3 cut(s)	100, 382, 1244
Hpy99I	CGWCG	1 cut(s)	1251
HpyAV	CCTTC	5 cut(s)	26, 283, 837, 927, 1066
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	5 cut(s)	370, 1214, 1236, 1240, 1246
HpyCH4V	TGCA	8 cut(s)	186, 346, 382, 570, 673, 752, 946, 968
HpyF3I	CTNAG	6 cut(s)	28, 45, 480, 639, 796, 1149
HpySE526I	ACGT	5 cut(s)	370, 1214, 1236, 1240, 1246
Hsp92II	CATG	6 cut(s)	116, 368, 506, 606, 659, 980
HspAI	GCGC	1 cut(s)	477
LmnI	GCTCC	3 cut(s)	905, 986, 994
Lsp1109I	GCAGC	2 cut(s)	854, 895
LweI	GCATC	3 cut(s)	406, 742, 761
MaeI	CTAG	4 cut(s)	410, 864, 875, 1095
MaeII	ACGT	5 cut(s)	370, 1214, 1236, 1240, 1246
MaeIII	GTNAC	1 cut(s)	1075
MboII	GAAGA	8 cut(s)	135, 170, 336, 411, 477, 621, 674, 1275
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	3 cut(s)	8, 242, 598
MhlI	GDGCHC	2 cut(s)	384, 991
MluCI	AATT	8 cut(s)	126, 150, 188, 263, 625, 644, 756, 1144
MlyI	GAGTC	1 cut(s)	1160
MmeI	TCCRAC	3 cut(s)	790, 1000, 1188
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	8 cut(s)	138, 209, 393, 432, 743, 869, 1001, 1263
MslI	CAYNNNNRTG	1 cut(s)	1082
MspA1I	CMGCKG	1 cut(s)	845
MspCI	CTTAAG	1 cut(s)	1262
MspI	CCGG	3 cut(s)	591, 984, 1071
MunI	CAATTG	1 cut(s)	756
NcoI	CCATGG	1 cut(s)	602
NlaIII	CATG	6 cut(s)	116, 368, 506, 606, 659, 980
NlaIV	GGNNCC	5 cut(s)	600, 982, 1012, 1069, 1259
NmuCI	GTSAC	1 cut(s)	1075
NspI	RCATGY	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	1082
PcsI	WCGNNNNNNNCGW	1 cut(s)	1246
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	5 cut(s)	116, 145, 327, 701, 1046
Pfl23II	CGTACG	2 cut(s)	1233, 1237
PflMI	CCANNNNNTGG	2 cut(s)	161, 235
PkrI	GCNGC	2 cut(s)	844, 910
PleI	GAGTC	1 cut(s)	1160
PpsI	GAGTC	1 cut(s)	1160
Ppu21I	YACGTR	3 cut(s)	1215, 1237, 1241
PshBI	ATTAAT	1 cut(s)	869
Psp124BI	GAGCTC	1 cut(s)	991
PspLI	CGTACG	2 cut(s)	1233, 1237
PspN4I	GGNNCC	5 cut(s)	600, 982, 1012, 1069, 1259
PspPI	GGNCC	1 cut(s)	763
PsuI	RGATCY	3 cut(s)	8, 242, 598
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	7 cut(s)	101, 820, 1036, 1213, 1235, 1239, 1243
RsaNI	GTAC	7 cut(s)	100, 819, 1035, 1212, 1234, 1238, 1242
RseI	CAYNNNNRTG	1 cut(s)	1082
SacI	GAGCTC	1 cut(s)	991
SaqAI	TTAA	8 cut(s)	138, 209, 393, 432, 743, 869, 1001, 1263
SatI	GCNGC	2 cut(s)	843, 909
Sau96I	GGNCC	1 cut(s)	763
SchI	GAGTC	1 cut(s)	1160
SduI	GDGCHC	2 cut(s)	384, 991
SfaNI	GCATC	3 cut(s)	406, 742, 761
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	1 cut(s)	763
SmiMI	CAYNNNNRTG	1 cut(s)	1082
SmlI	CTYRAG	1 cut(s)	1262
SmoI	CTYRAG	1 cut(s)	1262
SnaBI	TACGTA	2 cut(s)	1237, 1241
Sse9I	AATT	8 cut(s)	126, 150, 188, 263, 625, 644, 756, 1144
SsiI	CCGC	1 cut(s)	239
SspI	AATATT	3 cut(s)	359, 391, 406
SspMI	CTAG	4 cut(s)	410, 864, 875, 1095
SstI	GAGCTC	1 cut(s)	991
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	5 cut(s)	373, 1217, 1239, 1243, 1249
TasI	AATT	8 cut(s)	126, 150, 188, 263, 625, 644, 756, 1144
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	5 cut(s)	116, 145, 327, 701, 1046
Tru1I	TTAA	8 cut(s)	138, 209, 393, 432, 743, 869, 1001, 1263
Tru9I	TTAA	8 cut(s)	138, 209, 393, 432, 743, 869, 1001, 1263
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	1075
TseI	GCWGC	2 cut(s)	842, 908
Tsp45I	GTSAC	1 cut(s)	1075
TspDTI	ATGAA	3 cut(s)	381, 477, 644
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	306
Van91I	CCANNNNNTGG	2 cut(s)	161, 235
Vha464I	CTTAAG	1 cut(s)	1262
VneI	GTGCAC	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	763
VspI	ATTAAT	1 cut(s)	869
XapI	RAATTY	4 cut(s)	150, 188, 263, 644
XbaI	TCTAGA	1 cut(s)	863
XceI	RCATGY	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	4 cut(s)	410, 864, 875, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.