Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015688

Physical Location & Seq

Genomic Coordinates Reverse (-)

47735707 .. 47751042

Gene Structure 15336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTTCAGATCTTTCCTTCCAAAACTCTTAGAACTCCCACCACCTCAGATCGACTTCGGCTTGGACTTCCGTATTATAGAAAGTGTCGGTGGCCGTGTGTACAAGGCAATACATGATTCTGGAAGAATTATTGCTGTTAAAAAGATTCAAATTCCAGAAGATGGTTCAAATGAGAACCAGATTAAGAAGCTGGAAGATGAAGTGAGGAATCTACAATTGCTGTCTCATCCAAATATTGTTCAATATTTGGGAACGAGGAGAGTGGCGGGATCTTTGTGTATCCTGATGGAATTCTGGGGCAAATCAGACTGCTCGAAGGAACTAAGACTGTTCAACGAGACAAAAACAAGAAGATTCACCATTCAGTTGTTGCAGGGACTACAATATTTACATGAACGTAAAATCGTGCACGGGAATATTAAGGGAAGAAATATCCTGGTTGATGCTTTTGGAGACATTAAGCTTGCTGATTTTGGTCTATCAGCACATTCAAACCTTTTGGGCGCTCAGTCTTCATCTGGATACAGACATTCTGTTGAAATCTTTCAACCCCCGCCTCATCTCGACCCATTTGCTGATATATGGTGTGTTGGGTGCATTATGATTGAGCTGACCACCGGAAAGGATCCATGGCGAAGAGAGAGCTGGTCGAATTATATTTTGCCCAAGAAATTTTCTTTTCATGCGAAAAACTTTTTGCAAGAGTGTCTTCAATGGGAACAACAAGATTCGAGGCTACCCACATTTGTCTTGCTTCAGCATCCATTCTTAAATCCTGCATCAATTGAGGTCCGACCTACTCAACTACTTCCGAGGGAAAGCTTAGTTGCTGAAGTGCTATATTGTACGTCACCTTCACCAACTTACGCAGCTGTTGGTGGAGATCATTCTAGATTGATGCTAGATCAGAATAGCATTTCAGGAGATGAGGGAGCTGCTGAACCTTCTCATAATGCTGAACCTCCTATAATGCAGAGAACTAATCAAGCCTTTGCACTTCAACATGGTGCCGGAGCTCCTGTCAATTTAACTCTTAGTTCCAATGTTGGATCAACTCCCAGTACTTGTCCTAATATTAAGTCCATTAATACTTCCGACTCCAAATCTATTTCGACACTTGTTCATATTCTCGATCCAAATAGTACGTGCTTCCAAAAGGAGGCGTACGGTAATTTCAAGAGCTCTCCAGGGGATAAAGAATTTTTATTGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

405

Amino Acids

45.32

Weight (kDa)

7.2

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 257	2.2e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 213	2.3e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13250 FvH4_7g13250 FvH4_7g13250 FvH4_7g13250
rosa_laevigata	RLG00000028335
rosa_multiflora	Rmu_sc0002244.1_g000032 Rmu_ssc0000172.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302940
rosa_rugosa	Rorug01G0228300
rosa_samantha	Rh1AG006000 Rh1AG241500 Rh1BG212700 Rh1CG225400 Rh1DG238900 Rh3BG284000
rosa_wichuraiana	Rw1G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1007
AccB7I	CCANNNNNTGG	1 cut(s)	161
AciI	CCGC	2 cut(s)	266, 554
AclWI	GGATC	5 cut(s)	277, 620, 633, 1057, 1127
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	4 cut(s)	150, 290, 671, 1199
AcuI	CTGAAG	2 cut(s)	740, 852
AfaI	GTAC	5 cut(s)	101, 847, 1063, 1144, 1166
AfiI	CCNNNNNNNGG	2 cut(s)	161, 1159
AjnI	CCWGG	2 cut(s)	435, 1186
AluBI	AGCT	9 cut(s)	190, 463, 610, 645, 822, 872, 935, 1016, 1182
AluI	AGCT	9 cut(s)	190, 463, 610, 645, 822, 872, 935, 1016, 1182
Alw21I	GWGCWC	3 cut(s)	411, 1018, 1184
Alw26I	GTCTC	3 cut(s)	228, 332, 447
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	5 cut(s)	277, 620, 633, 1057, 1127
AoxI	GGCC	1 cut(s)	91
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	2 cut(s)	869, 935
ApoI	RAATTY	4 cut(s)	150, 290, 671, 1199
AseI	ATTAAT	1 cut(s)	1086
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	790
AsuHPI	GGTGA	3 cut(s)	349, 843, 849
AvaII	GGWCC	1 cut(s)	790
BaeGI	GKGCMC	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	1007
BanII	GRGCYC	2 cut(s)	1018, 1184
BarI	GAAGNNNNNNTAC	2 cut(s)	838, 870
BbsI	GAAGAC	2 cut(s)	504, 701
Bbv12I	GWGCWC	3 cut(s)	411, 1018, 1184
BbvI	GCAGC	2 cut(s)	881, 922
BccI	CCATC	2 cut(s)	155, 280
BceAI	ACGGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	2 cut(s)	437, 1188
BciVI	GTATCC	2 cut(s)	290, 515
BcoDI	GTCTC	3 cut(s)	228, 332, 447
BfaI	CTAG	2 cut(s)	891, 902
BfoI	RGCGCY	1 cut(s)	507
BfuI	GTATCC	2 cut(s)	290, 515
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	2 cut(s)	870, 936
BlsI	GCNGC	2 cut(s)	871, 937
BmcAI	AGTACT	1 cut(s)	1063
Bme1390I	CCNGG	2 cut(s)	437, 1188
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	2 cut(s)	627, 1009
BmrFI	CCNGG	2 cut(s)	437, 1188
BmrI	ACTGGG	1 cut(s)	1053
BmsI	GCATC	4 cut(s)	433, 769, 788, 888
BmuI	ACTGGG	1 cut(s)	1053
BpiI	GAAGAC	2 cut(s)	504, 701
BpmI	CTGGAG	1 cut(s)	1170
BsaAI	YACGTR	1 cut(s)	1146
BsaJI	CCNNGG	3 cut(s)	629, 812, 1187
BsaWI	WCCGGW	1 cut(s)	617
BsaXI	ACNNNNNCTCC	2 cut(s)	1005, 1035
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 1159
Bse1I	ACTGG	1 cut(s)	1059
BseBI	CCWGG	2 cut(s)	437, 1188
BseDI	CCNNGG	3 cut(s)	629, 812, 1187
BseGI	GGATG	2 cut(s)	226, 760
BseLI	CCNNNNNNNGG	2 cut(s)	161, 1159
BseMII	CTCAG	2 cut(s)	59, 521
BseNI	ACTGG	1 cut(s)	1059
BseRI	GAGGAG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	881, 922
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	1007
BsiHKAI	GWGCWC	3 cut(s)	411, 1018, 1184
BsiSI	CCGG	2 cut(s)	618, 1011
BsiWI	CGTACG	1 cut(s)	1164
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	161, 1159
BsmAI	GTCTC	3 cut(s)	228, 332, 447
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	411, 1018, 1184
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	8 cut(s)	8, 48, 269, 625, 883, 904, 1049, 1132
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	2 cut(s)	266, 554
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	58, 520
BspLI	GGNNCC	2 cut(s)	627, 1009
BspPI	GGATC	5 cut(s)	277, 620, 633, 1057, 1127
BspT107I	GGYRCC	1 cut(s)	1007
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	1059
BssECI	CCNNGG	3 cut(s)	629, 812, 1187
BssMI	GATC	8 cut(s)	8, 48, 269, 625, 883, 904, 1049, 1132
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	2 cut(s)	437, 1188
Bst4CI	ACNGT	2 cut(s)	330, 1169
Bst6I	CTCTTC	1 cut(s)	631
BstAUI	TGTACA	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	1146
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	6 cut(s)	28, 45, 323, 507, 823, 1034
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	226, 760
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	8 cut(s)	11, 51, 272, 628, 886, 907, 1052, 1135
BstMAI	GTCTC	3 cut(s)	228, 332, 447
BstMBI	GATC	8 cut(s)	8, 48, 269, 625, 883, 904, 1049, 1132
BstNI	CCWGG	2 cut(s)	437, 1188
BstSCI	CCNGG	2 cut(s)	435, 1186
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	881, 922
BstV2I	GAAGAC	2 cut(s)	504, 701
BstX2I	RGATCY	3 cut(s)	8, 269, 625
BstYI	RGATCY	3 cut(s)	8, 269, 625
BsuI	GTATCC	2 cut(s)	290, 515
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	226, 760
Cac8I	GCNNGC	1 cut(s)	465
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	790
Csp6I	GTAC	5 cut(s)	100, 846, 1062, 1143, 1165
CviAII	CATG	5 cut(s)	113, 392, 630, 683, 1004
CviQI	GTAC	5 cut(s)	100, 846, 1062, 1143, 1165
DdeI	CTNAG	6 cut(s)	28, 45, 323, 507, 823, 1034
DpnI	GATC	8 cut(s)	10, 50, 271, 627, 885, 906, 1051, 1134
DpnII	GATC	8 cut(s)	8, 48, 269, 625, 883, 904, 1049, 1132
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
Ecl136II	GAGCTC	2 cut(s)	1016, 1182
Eco130I	CCWWGG	1 cut(s)	629
Eco24I	GRGCYC	2 cut(s)	1018, 1184
Eco47I	GGWCC	1 cut(s)	790
Eco53kI	GAGCTC	2 cut(s)	1016, 1182
Eco57I	CTGAAG	2 cut(s)	740, 852
EcoICRI	GAGCTC	2 cut(s)	1016, 1182
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	435, 1186
EcoT14I	CCWWGG	1 cut(s)	629
EcoT38I	GRGCYC	2 cut(s)	1018, 1184
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	5 cut(s)	116, 395, 633, 686, 1007
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	5 cut(s)	112, 391, 629, 682, 1003
FauI	CCCGC	2 cut(s)	259, 561
Fnu4HI	GCNGC	2 cut(s)	870, 936
FokI	GGATG	2 cut(s)	213, 747
FriOI	GRGCYC	2 cut(s)	1018, 1184
Fsp4HI	GCNGC	2 cut(s)	870, 936
FspBI	CTAG	2 cut(s)	891, 902
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	2 cut(s)	870, 936
GsuI	CTGGAG	1 cut(s)	1170
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	618, 1011
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	5 cut(s)	116, 395, 633, 686, 1007
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	2 cut(s)	461, 820
HinfI	GANTC	6 cut(s)	116, 145, 208, 354, 728, 1097
HpaII	CCGG	2 cut(s)	618, 1011
HphI	GGTGA	3 cut(s)	349, 843, 849
Hpy166II	GTNNAC	2 cut(s)	100, 409
Hpy188I	TCNGA	7 cut(s)	8, 48, 307, 794, 813, 909, 1096
Hpy188III	TCNNGA	9 cut(s)	120, 155, 283, 519, 563, 891, 921, 1130, 1177
Hpy8I	GTNNAC	2 cut(s)	100, 409
HpyAV	CCTTC	4 cut(s)	26, 310, 864, 954
HpyCH4III	ACNGT	2 cut(s)	330, 1169
HpyCH4IV	ACGT	3 cut(s)	397, 848, 1145
HpyCH4V	TGCA	7 cut(s)	373, 409, 597, 700, 779, 973, 995
HpyF3I	CTNAG	6 cut(s)	28, 45, 323, 507, 823, 1034
HpySE526I	ACGT	3 cut(s)	397, 848, 1145
Hsp92II	CATG	5 cut(s)	116, 395, 633, 686, 1007
HspAI	GCGC	1 cut(s)	504
Kzo9I	GATC	8 cut(s)	8, 48, 269, 625, 883, 904, 1049, 1132
LmnI	GCTCC	3 cut(s)	932, 1013, 1021
Lsp1109I	GCAGC	2 cut(s)	881, 922
LweI	GCATC	4 cut(s)	433, 769, 788, 888
MaeI	CTAG	2 cut(s)	891, 902
MaeII	ACGT	3 cut(s)	397, 848, 1145
MaeIII	GTNAC	1 cut(s)	849
MalI	GATC	8 cut(s)	10, 50, 271, 627, 885, 906, 1051, 1134
MboI	GATC	8 cut(s)	8, 48, 269, 625, 883, 904, 1049, 1132
MboII	GAAGA	8 cut(s)	135, 170, 206, 363, 438, 504, 648, 701
MfeI	CAATTG	2 cut(s)	215, 783
MflI	RGATCY	3 cut(s)	8, 269, 625
MhlI	GDGCHC	3 cut(s)	411, 1018, 1184
MlyI	GAGTC	1 cut(s)	1091
MmeI	TCCRAC	3 cut(s)	817, 1027, 1119
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	8 cut(s)	138, 183, 420, 459, 770, 1028, 1077, 1086
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	2 cut(s)	618, 1011
MspR9I	CCNGG	2 cut(s)	437, 1188
MunI	CAATTG	2 cut(s)	215, 783
MvaI	CCWGG	2 cut(s)	437, 1188
NcoI	CCATGG	1 cut(s)	629
NdeII	GATC	8 cut(s)	8, 48, 269, 625, 883, 904, 1049, 1132
NlaIII	CATG	5 cut(s)	116, 395, 633, 686, 1007
NlaIV	GGNNCC	2 cut(s)	627, 1009
NmuCI	GTSAC	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	5 cut(s)	116, 145, 208, 354, 728
Pfl23II	CGTACG	1 cut(s)	1164
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	871, 937
PleI	GAGTC	1 cut(s)	1091
PpsI	GAGTC	1 cut(s)	1091
Ppu21I	YACGTR	1 cut(s)	1146
PshBI	ATTAAT	1 cut(s)	1086
Psp124BI	GAGCTC	2 cut(s)	1018, 1184
Psp6I	CCWGG	2 cut(s)	435, 1186
PspGI	CCWGG	2 cut(s)	435, 1186
PspLI	CGTACG	1 cut(s)	1164
PspN4I	GGNNCC	2 cut(s)	627, 1009
PspPI	GGNCC	1 cut(s)	790
PsuI	RGATCY	3 cut(s)	8, 269, 625
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	5 cut(s)	101, 847, 1063, 1144, 1166
RsaNI	GTAC	5 cut(s)	100, 846, 1062, 1143, 1165
SacI	GAGCTC	2 cut(s)	1018, 1184
SaqAI	TTAA	8 cut(s)	138, 183, 420, 459, 770, 1028, 1077, 1086
SatI	GCNGC	2 cut(s)	870, 936
Sau3AI	GATC	8 cut(s)	8, 48, 269, 625, 883, 904, 1049, 1132
Sau96I	GGNCC	1 cut(s)	790
ScaI	AGTACT	1 cut(s)	1063
SchI	GAGTC	1 cut(s)	1091
ScrFI	CCNGG	2 cut(s)	437, 1188
SduI	GDGCHC	3 cut(s)	411, 1018, 1184
SfaNI	GCATC	4 cut(s)	433, 769, 788, 888
SinI	GGWCC	1 cut(s)	790
SsiI	CCGC	2 cut(s)	266, 554
SspI	AATATT	5 cut(s)	235, 245, 386, 418, 1075
SspMI	CTAG	2 cut(s)	891, 902
SstI	GAGCTC	2 cut(s)	1018, 1184
StyD4I	CCNGG	2 cut(s)	435, 1186
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	2 cut(s)	330, 1169
TaiI	ACGT	3 cut(s)	400, 851, 1148
TaqI	TCGA	7 cut(s)	51, 314, 564, 650, 731, 1112, 1131
TatI	WGTACW	2 cut(s)	99, 1061
TfiI	GAWTC	5 cut(s)	116, 145, 208, 354, 728
Tru1I	TTAA	8 cut(s)	138, 183, 420, 459, 770, 1028, 1077, 1086
Tru9I	TTAA	8 cut(s)	138, 183, 420, 459, 770, 1028, 1077, 1086
TseFI	GTSAC	1 cut(s)	849
TseI	GCWGC	2 cut(s)	869, 935
Tsp45I	GTSAC	1 cut(s)	849
TspDTI	ATGAA	5 cut(s)	213, 408, 504, 671, 1112
TspGWI	ACGGA	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	790
VspI	ATTAAT	1 cut(s)	1086
XapI	RAATTY	4 cut(s)	150, 290, 671, 1199
XbaI	TCTAGA	1 cut(s)	890
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	2 cut(s)	891, 902
ZrmI	AGTACT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.