Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000172.1

Orthogroup ID

OG0015688

Physical Location & Seq

Genomic Coordinates Forward (+)

14058 .. 15823

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000172.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggaattctggggcaaatcagactgctcgaaggaaccaagactgttcaacgagacaaaaacaagaagattcaccattcagttgttgcagggactacaatatttacatgaacgtaaaatcgtgcacgggaatattaagggaagaaatatcctggttgatgcttttggagacattaagcttgctgattttggtctatcagcacattcaaaccttttgggcgctcagtcttcatctggatacagacattctgttgaaatctttcaacccccgcctcatctcgacccatttgctgatatatggtgtgttgggtgcattatgattgagctgaccaccggaaaggatccatggcgaagagagagctggtcgaattatattttgcctaagaaattttcttttcatgcgaaaaactttttgcaagagtgtcttcaatgggaacaacaagattcgaggctacccacatttgtcttgcttcagcatccattcttaaatcctgcatcaattgaggtccgacctactcaactacttccgagggaaagcttagttgctgaagtgctatattgtacctcaccttcaccaacttacgcagctgttggtggagatcattctagattgatgctagatcagaacagcatttcaggagatgagggagctgctgaaccttctcataatgctgaacctcctataatgcagagacctaatcaagcctttgcacttcaacatggtgccggagctcctgtcaatttaactcttagttccaatgttggatcaactcccagtacttgtcctaatattaagtccaatacttccgactccaaatctatttcgacacttgttcatattctcgatccaaatagtacgtgcttccaaaaggaggcgtacgtacgtacacgtcaatccgggttccttaagttcttgtgtttttattctccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

310

Amino Acids

34.7

Weight (kDa)

7.15

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13250 FvH4_7g13250 FvH4_7g13250 FvH4_7g13250
rosa_laevigata	RLG00000028335
rosa_multiflora	Rmu_sc0002244.1_g000032 Rmu_ssc0000172.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302940
rosa_rugosa	Rorug01G0228300
rosa_samantha	Rh1AG006000 Rh1AG241500 Rh1BG212700 Rh1CG225400 Rh1DG238900 Rh3BG284000
rosa_wichuraiana	Rw1G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	722
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	4 cut(s)	335, 348, 772, 839
AcsI	RAATTY	2 cut(s)	5, 386
AcuI	CTGAAG	2 cut(s)	455, 567
AfaI	GTAC	6 cut(s)	562, 778, 856, 878, 882, 886
AfiI	CCNNNNNNNGG	1 cut(s)	871
AflII	CTTAAG	1 cut(s)	905
AflIII	ACRYGT	1 cut(s)	887
AgsI	TTSAA	6 cut(s)	49, 207, 254, 263, 428, 716
AjiI	CACGTC	1 cut(s)	890
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	7 cut(s)	178, 325, 360, 537, 587, 650, 731
AluI	AGCT	7 cut(s)	178, 325, 360, 537, 587, 650, 731
Alw21I	GWGCWC	2 cut(s)	126, 733
Alw26I	GTCTC	3 cut(s)	47, 162, 685
Alw44I	GTGCAC	1 cut(s)	122
AlwI	GGATC	4 cut(s)	335, 348, 772, 839
ApaLI	GTGCAC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	584, 650
ApoI	RAATTY	2 cut(s)	5, 386
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	3 cut(s)	64, 558, 564
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	733
BarI	GAAGNNNNNNTAC	2 cut(s)	553, 585
BbsI	GAAGAC	2 cut(s)	219, 416
Bbv12I	GWGCWC	2 cut(s)	126, 733
BbvI	GCAGC	2 cut(s)	596, 637
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	3 cut(s)	47, 162, 685
BfaI	CTAG	2 cut(s)	606, 617
BfoI	RGCGCY	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	905
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	585, 651
BlsI	GCNGC	2 cut(s)	586, 652
BmcAI	AGTACT	1 cut(s)	778
Bme1390I	CCNGG	2 cut(s)	152, 898
Bme18I	GGWCC	1 cut(s)	505
BmgBI	CACGTC	1 cut(s)	890
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	4 cut(s)	36, 342, 724, 902
BmrFI	CCNGG	2 cut(s)	152, 898
BmrI	ACTGGG	1 cut(s)	768
BmsI	GCATC	4 cut(s)	148, 484, 503, 603
BmuI	ACTGGG	1 cut(s)	768
BpiI	GAAGAC	2 cut(s)	219, 416
BpuMI	CCSGG	1 cut(s)	898
BsaAI	YACGTR	3 cut(s)	858, 880, 884
BsaI	GGTCTC	1 cut(s)	685
BsaJI	CCNNGG	2 cut(s)	344, 527
BsaWI	WCCGGW	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	871
Bse1I	ACTGG	1 cut(s)	774
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	344, 527
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	871
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	774
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	596, 637
BshNI	GGYRCC	1 cut(s)	722
BsiHKAI	GWGCWC	2 cut(s)	126, 733
BsiSI	CCGG	3 cut(s)	333, 726, 897
BsiWI	CGTACG	2 cut(s)	876, 880
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	871
BsmAI	GTCTC	3 cut(s)	47, 162, 685
BsmFI	GGGAC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	126, 733
Bsp143I	GATC	5 cut(s)	340, 598, 619, 764, 844
Bsp19I	CCATGG	1 cut(s)	344
BspACI	CCGC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	4 cut(s)	36, 342, 724, 902
BspPI	GGATC	4 cut(s)	335, 348, 772, 839
BspT107I	GGYRCC	1 cut(s)	722
BspTI	CTTAAG	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	774
BssECI	CCNNGG	2 cut(s)	344, 527
BssMI	GATC	5 cut(s)	340, 598, 619, 764, 844
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	346
BstAFI	CTTAAG	1 cut(s)	905
BstBAI	YACGTR	3 cut(s)	858, 880, 884
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	222, 381, 538, 749
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	475
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	5 cut(s)	343, 601, 622, 767, 847
BstMAI	GTCTC	3 cut(s)	47, 162, 685
BstMBI	GATC	5 cut(s)	340, 598, 619, 764, 844
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	150, 896
BstSLI	GKGCMC	1 cut(s)	126
BstSNI	TACGTA	2 cut(s)	880, 884
BstV1I	GCAGC	2 cut(s)	596, 637
BstV2I	GAAGAC	2 cut(s)	219, 416
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	344
BtrI	CACGTC	1 cut(s)	890
BtsCI	GGATG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	6 cut(s)	561, 777, 855, 877, 881, 885
CviAII	CATG	4 cut(s)	107, 345, 398, 719
CviJI	RGCY	9 cut(s)	178, 325, 360, 451, 537, 587, 650, 704, 731
CviKI_1	RGCY	9 cut(s)	178, 325, 360, 451, 537, 587, 650, 704, 731
CviQI	GTAC	6 cut(s)	561, 777, 855, 877, 881, 885
DdeI	CTNAG	4 cut(s)	222, 381, 538, 749
DpnI	GATC	5 cut(s)	342, 600, 621, 766, 846
DpnII	GATC	5 cut(s)	340, 598, 619, 764, 844
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	731
Eco105I	TACGTA	2 cut(s)	880, 884
Eco130I	CCWWGG	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	733
Eco31I	GGTCTC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	731
Eco57I	CTGAAG	2 cut(s)	455, 567
EcoICRI	GAGCTC	1 cut(s)	731
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	4 cut(s)	110, 348, 401, 722
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	4 cut(s)	106, 344, 397, 718
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	585, 651
FokI	GGATG	1 cut(s)	462
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	2 cut(s)	585, 651
FspBI	CTAG	2 cut(s)	606, 617
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	2 cut(s)	585, 651
HaeII	RGCGCY	1 cut(s)	222
HapII	CCGG	3 cut(s)	333, 726, 897
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	110, 348, 401, 722
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HindIII	AAGCTT	2 cut(s)	176, 535
HinfI	GANTC	3 cut(s)	69, 443, 809
HpaII	CCGG	3 cut(s)	333, 726, 897
HphI	GGTGA	3 cut(s)	64, 558, 564
Hpy166II	GTNNAC	2 cut(s)	124, 887
Hpy188I	TCNGA	5 cut(s)	22, 509, 528, 624, 808
Hpy188III	TCNNGA	5 cut(s)	234, 278, 606, 636, 842
Hpy8I	GTNNAC	2 cut(s)	124, 887
HpyAV	CCTTC	3 cut(s)	25, 579, 669
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	5 cut(s)	112, 857, 879, 883, 889
HpyCH4V	TGCA	7 cut(s)	88, 124, 312, 415, 494, 688, 710
HpyF3I	CTNAG	4 cut(s)	222, 381, 538, 749
HpySE526I	ACGT	5 cut(s)	112, 857, 879, 883, 889
Hsp92II	CATG	4 cut(s)	110, 348, 401, 722
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	340, 598, 619, 764, 844
LmnI	GCTCC	3 cut(s)	647, 728, 736
Lsp1109I	GCAGC	2 cut(s)	596, 637
LweI	GCATC	4 cut(s)	148, 484, 503, 603
MaeI	CTAG	2 cut(s)	606, 617
MaeII	ACGT	5 cut(s)	112, 857, 879, 883, 889
MalI	GATC	5 cut(s)	342, 600, 621, 766, 846
MboI	GATC	5 cut(s)	340, 598, 619, 764, 844
MboII	GAAGA	5 cut(s)	78, 153, 219, 363, 416
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	126, 733
MluCI	AATT	5 cut(s)	5, 367, 386, 498, 739
MlyI	GAGTC	1 cut(s)	803
MmeI	TCCRAC	3 cut(s)	532, 742, 831
MnlI	CCTC	8 cut(s)	282, 441, 496, 522, 574, 637, 687, 865
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	6 cut(s)	135, 174, 485, 743, 792, 906
MspA1I	CMGCKG	1 cut(s)	587
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	3 cut(s)	333, 726, 897
MspR9I	CCNGG	2 cut(s)	152, 898
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	152
NciI	CCSGG	1 cut(s)	898
NcoI	CCATGG	1 cut(s)	344
NdeII	GATC	5 cut(s)	340, 598, 619, 764, 844
NlaIII	CATG	4 cut(s)	110, 348, 401, 722
NlaIV	GGNNCC	4 cut(s)	36, 342, 724, 902
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	69, 443
Pfl23II	CGTACG	2 cut(s)	876, 880
PkrI	GCNGC	2 cut(s)	586, 652
PleI	GAGTC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	803
Ppu21I	YACGTR	3 cut(s)	858, 880, 884
Psp124BI	GAGCTC	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspLI	CGTACG	2 cut(s)	876, 880
PspN4I	GGNNCC	4 cut(s)	36, 342, 724, 902
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	6 cut(s)	562, 778, 856, 878, 882, 886
RsaNI	GTAC	6 cut(s)	561, 777, 855, 877, 881, 885
SacI	GAGCTC	1 cut(s)	733
SaqAI	TTAA	6 cut(s)	135, 174, 485, 743, 792, 906
SatI	GCNGC	2 cut(s)	585, 651
Sau3AI	GATC	5 cut(s)	340, 598, 619, 764, 844
Sau96I	GGNCC	1 cut(s)	505
ScaI	AGTACT	1 cut(s)	778
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	2 cut(s)	152, 898
SduI	GDGCHC	2 cut(s)	126, 733
SfaNI	GCATC	4 cut(s)	148, 484, 503, 603
SinI	GGWCC	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
SnaBI	TACGTA	2 cut(s)	880, 884
Sse9I	AATT	5 cut(s)	5, 367, 386, 498, 739
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	3 cut(s)	101, 133, 790
SspMI	CTAG	2 cut(s)	606, 617
SstI	GAGCTC	1 cut(s)	733
StyD4I	CCNGG	2 cut(s)	150, 896
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	5 cut(s)	115, 860, 882, 886, 892
TaqI	TCGA	6 cut(s)	29, 279, 365, 446, 824, 843
TasI	AATT	5 cut(s)	5, 367, 386, 498, 739
TatI	WGTACW	1 cut(s)	776
TfiI	GAWTC	2 cut(s)	69, 443
Tru1I	TTAA	6 cut(s)	135, 174, 485, 743, 792, 906
Tru9I	TTAA	6 cut(s)	135, 174, 485, 743, 792, 906
TseI	GCWGC	2 cut(s)	584, 650
TspDTI	ATGAA	4 cut(s)	123, 219, 386, 824
Vha464I	CTTAAG	1 cut(s)	905
VneI	GTGCAC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	2 cut(s)	5, 386
XbaI	TCTAGA	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	2 cut(s)	606, 617
ZrmI	AGTACT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.