Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002244.1

Orthogroup ID

OG0015688

Physical Location & Seq

Genomic Coordinates Forward (+)

131570 .. 139138

Gene Structure 7569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002244.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atgttcagatctttccttccaaaactcttagaactcccaccacctcagatcaacttcggcttggacttccgtattatagaaagtgtcggtggccgtgtgtacaaggcaatacatgattctggaagaattattgctgttaaaaagattaagaagctggaagatgaagtgaggaatctacaattgctgtctcatccaaatattgttcaatatttgggaacgaggagagtggcgggatctttgtgtatcctgatggaattctggggcaaatcagactgctcgaaggaaccaagactgttcaacgagacaaaaacaagaagattcaccattcagttgttgcagggactacaatatttacatgaacgtaaaatcgtgcacgggaatattaagggaagaaatatcctggttgatgcttttggggacattaagcttgctgattttggtctatcagcacattcaaaccttttgggcgctcagtcttcatctggatacagacattctgttgaaatctttcaacccccgcctcatctcgacccatttgctgatatatggtgtgttgggtgcattatgattgagctgaccaccggaaaggatccatggcgaagagagagctggtcgaattatattttgcctaagaaattttcttttcatgcgaaaaactttttgcaagagtgtcttcaatgggaacaacaagattcgaggctacccacatttgtcttgcttcagcatccattcttaaatcctgcatcaattgaggtccgacctactcaactacttccgagggaaagcttagttgctgaagtgctatattgtacctcaccttcaccaacttacgcagctgttggtggagatcattctagattgatgctagaacagaatagcatttcaggagatgagggagctgctgaaccttctcatactgctgaacctcctataatgcagagacctaatcaagcctttgcacttcaacatggtgccggagctcttgtcagtttaactcttagttccaatgttggatcaactcccagtacttgtcctaatattaagtccaatactttcgactccaaatctatttcgacacttgttcctattctcgatccaaatagtacgtgcttccaaaaggaggcgtacgggaagatcgatatagatggaggccagagaagaatggaaaagtacactgtcgagtctgcatattggattgctcgacaacaagttatgggagaattcctaacttctacctcatctggaaatccatacgaggttctatggaagaaaatttggaacacaggttcctggcaaagtgaaaatgtgtctctggagggctgcaaacaacatattgcctactcgagaaagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

451

Amino Acids

50.76

Weight (kDa)

8.61

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13250 FvH4_7g13250 FvH4_7g13250 FvH4_7g13250
rosa_laevigata	RLG00000028335
rosa_multiflora	Rmu_sc0002244.1_g000032 Rmu_ssc0000172.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302940
rosa_rugosa	Rorug01G0228300
rosa_samantha	Rh1AG006000 Rh1AG241500 Rh1BG212700 Rh1CG225400 Rh1DG238900 Rh3BG284000
rosa_wichuraiana	Rw1G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	971
AciI	CCGC	2 cut(s)	230, 518
AclWI	GGATC	5 cut(s)	241, 584, 597, 1021, 1088
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	4 cut(s)	254, 635, 1220, 1272
AcuI	CTGAAG	2 cut(s)	704, 816
AfaI	GTAC	6 cut(s)	101, 811, 1027, 1105, 1127, 1172
AfiI	CCNNNNNNNGG	1 cut(s)	1120
AgsI	TTSAA	7 cut(s)	206, 298, 456, 503, 512, 677, 965
AjnI	CCWGG	2 cut(s)	399, 1289
AloI	GAACNNNNNNTCC	4 cut(s)	1270, 1271, 1302, 1303
AluBI	AGCT	9 cut(s)	154, 427, 574, 609, 786, 836, 899, 980, 1351
AluI	AGCT	9 cut(s)	154, 427, 574, 609, 786, 836, 899, 980, 1351
Alw21I	GWGCWC	2 cut(s)	375, 982
Alw26I	GTCTC	4 cut(s)	192, 296, 934, 1314
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	5 cut(s)	241, 584, 597, 1021, 1088
Ama87I	CYCGRG	1 cut(s)	1342
AoxI	GGCC	2 cut(s)	91, 1150
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	833, 899, 1320
ApoI	RAATTY	4 cut(s)	254, 635, 1220, 1272
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	754
AsuHPI	GGTGA	3 cut(s)	313, 807, 813
AvaI	CYCGRG	1 cut(s)	1342
AvaII	GGWCC	1 cut(s)	754
BaeGI	GKGCMC	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	982
BarI	GAAGNNNNNNTAC	2 cut(s)	802, 834
BbsI	GAAGAC	2 cut(s)	468, 665
Bbv12I	GWGCWC	2 cut(s)	375, 982
BbvI	GCAGC	3 cut(s)	845, 886, 1307
BccI	CCATC	2 cut(s)	244, 1139
BceAI	ACGGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	2 cut(s)	401, 1291
BciVI	GTATCC	2 cut(s)	254, 479
BcoDI	GTCTC	4 cut(s)	192, 296, 934, 1314
BfaI	CTAG	2 cut(s)	855, 866
BfoI	RGCGCY	1 cut(s)	471
BfuI	GTATCC	2 cut(s)	254, 479
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	3 cut(s)	834, 900, 1321
BlsI	GCNGC	3 cut(s)	835, 901, 1322
BmcAI	AGTACT	1 cut(s)	1027
Bme1390I	CCNGG	2 cut(s)	401, 1291
Bme18I	GGWCC	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	1342
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	4 cut(s)	285, 591, 973, 1288
BmrFI	CCNGG	2 cut(s)	401, 1291
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	4 cut(s)	397, 733, 752, 852
BmuI	ACTGGG	1 cut(s)	1017
BpiI	GAAGAC	2 cut(s)	468, 665
BpmI	CTGGAG	1 cut(s)	1334
Bsa29I	ATCGAT	1 cut(s)	1137
BsaAI	YACGTR	1 cut(s)	1107
BsaI	GGTCTC	1 cut(s)	934
BsaJI	CCNNGG	2 cut(s)	593, 776
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	1120
Bse1I	ACTGG	1 cut(s)	1023
BseBI	CCWGG	2 cut(s)	401, 1291
BseCI	ATCGAT	1 cut(s)	1137
BseDI	CCNNGG	2 cut(s)	593, 776
BseGI	GGATG	2 cut(s)	190, 724
BseLI	CCNNNNNNNGG	1 cut(s)	1120
BseMII	CTCAG	2 cut(s)	59, 485
BseNI	ACTGG	1 cut(s)	1023
BseRI	GAGGAG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	3 cut(s)	845, 886, 1307
BshFI	GGCC	2 cut(s)	93, 1152
BshNI	GGYRCC	1 cut(s)	971
BshVI	ATCGAT	1 cut(s)	1137
BsiHKAI	GWGCWC	2 cut(s)	375, 982
BsiHKCI	CYCGRG	1 cut(s)	1342
BsiSI	CCGG	2 cut(s)	582, 975
BsiWI	CGTACG	1 cut(s)	1125
BslFI	GGGAC	2 cut(s)	354, 431
BslI	CCNNNNNNNGG	1 cut(s)	1120
BsmAI	GTCTC	4 cut(s)	192, 296, 934, 1314
BsmFI	GGGAC	2 cut(s)	354, 431
BsnI	GGCC	2 cut(s)	93, 1152
Bso31I	GGTCTC	1 cut(s)	934
BsoBI	CYCGRG	1 cut(s)	1342
Bsp1286I	GDGCHC	2 cut(s)	375, 982
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	8 cut(s)	8, 48, 233, 589, 847, 1013, 1093, 1134
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	2 cut(s)	230, 518
BspANI	GGCC	2 cut(s)	93, 1152
BspCNI	CTCAG	2 cut(s)	58, 484
BspDI	ATCGAT	1 cut(s)	1137
BspLI	GGNNCC	4 cut(s)	285, 591, 973, 1288
BspPI	GGATC	5 cut(s)	241, 584, 597, 1021, 1088
BspT107I	GGYRCC	1 cut(s)	971
BspTNI	GGTCTC	1 cut(s)	934
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	1023
BssECI	CCNNGG	2 cut(s)	593, 776
BssMI	GATC	8 cut(s)	8, 48, 233, 589, 847, 1013, 1093, 1134
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	2 cut(s)	401, 1291
Bst4CI	ACNGT	2 cut(s)	294, 1177
Bst6I	CTCTTC	1 cut(s)	595
BstAUI	TGTACA	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	1107
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	6 cut(s)	28, 45, 471, 630, 787, 998
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	190, 724
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	8 cut(s)	11, 51, 236, 592, 850, 1016, 1096, 1137
BstMAI	GTCTC	4 cut(s)	192, 296, 934, 1314
BstMBI	GATC	8 cut(s)	8, 48, 233, 589, 847, 1013, 1093, 1134
BstNI	CCWGG	2 cut(s)	401, 1291
BstSCI	CCNGG	2 cut(s)	399, 1289
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	845, 886, 1307
BstV2I	GAAGAC	2 cut(s)	468, 665
BstX2I	RGATCY	3 cut(s)	8, 233, 589
BstYI	RGATCY	3 cut(s)	8, 233, 589
Bsu15I	ATCGAT	1 cut(s)	1137
BsuI	GTATCC	2 cut(s)	254, 479
BsuRI	GGCC	2 cut(s)	93, 1152
BsuTUI	ATCGAT	1 cut(s)	1137
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	2 cut(s)	190, 724
BtsIMutI	CAGTG	1 cut(s)	1173
Cac8I	GCNNGC	1 cut(s)	429
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	754
ClaI	ATCGAT	1 cut(s)	1137
Csp6I	GTAC	6 cut(s)	100, 810, 1026, 1104, 1126, 1171
CviAII	CATG	5 cut(s)	113, 356, 594, 647, 968
CviQI	GTAC	6 cut(s)	100, 810, 1026, 1104, 1126, 1171
DdeI	CTNAG	6 cut(s)	28, 45, 471, 630, 787, 998
DpnI	GATC	8 cut(s)	10, 50, 235, 591, 849, 1015, 1095, 1136
DpnII	GATC	8 cut(s)	8, 48, 233, 589, 847, 1013, 1093, 1134
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Ecl136II	GAGCTC	1 cut(s)	980
Eco130I	CCWWGG	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	982
Eco31I	GGTCTC	1 cut(s)	934
Eco47I	GGWCC	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	980
Eco57I	CTGAAG	2 cut(s)	704, 816
Eco88I	CYCGRG	1 cut(s)	1342
EcoICRI	GAGCTC	1 cut(s)	980
EcoRI	GAATTC	2 cut(s)	254, 1220
EcoRII	CCWGG	2 cut(s)	399, 1289
EcoT14I	CCWWGG	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	982
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	5 cut(s)	116, 359, 597, 650, 971
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	2 cut(s)	354, 431
FatI	CATG	5 cut(s)	112, 355, 593, 646, 967
FauI	CCCGC	2 cut(s)	223, 525
Fnu4HI	GCNGC	3 cut(s)	834, 900, 1321
FokI	GGATG	2 cut(s)	177, 711
FriOI	GRGCYC	1 cut(s)	982
Fsp4HI	GCNGC	3 cut(s)	834, 900, 1321
FspBI	CTAG	2 cut(s)	855, 866
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	3 cut(s)	834, 900, 1321
GsuI	CTGGAG	1 cut(s)	1334
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	93, 1152
HapII	CCGG	2 cut(s)	582, 975
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	5 cut(s)	116, 359, 597, 650, 971
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HindIII	AAGCTT	3 cut(s)	425, 784, 1349
HinfI	GANTC	6 cut(s)	116, 172, 318, 692, 1058, 1181
HpaII	CCGG	2 cut(s)	582, 975
HphI	GGTGA	3 cut(s)	313, 807, 813
Hpy166II	GTNNAC	3 cut(s)	100, 373, 1173
Hpy188I	TCNGA	5 cut(s)	8, 48, 271, 758, 777
Hpy8I	GTNNAC	3 cut(s)	100, 373, 1173
HpyAV	CCTTC	4 cut(s)	26, 274, 828, 918
HpyCH4III	ACNGT	2 cut(s)	294, 1177
HpyCH4IV	ACGT	2 cut(s)	361, 1106
HpyCH4V	TGCA	9 cut(s)	337, 373, 561, 664, 743, 937, 959, 1187, 1323
HpyF3I	CTNAG	6 cut(s)	28, 45, 471, 630, 787, 998
HpySE526I	ACGT	2 cut(s)	361, 1106
Hsp92II	CATG	5 cut(s)	116, 359, 597, 650, 971
HspAI	GCGC	1 cut(s)	468
Kzo9I	GATC	8 cut(s)	8, 48, 233, 589, 847, 1013, 1093, 1134
LmnI	GCTCC	2 cut(s)	896, 977
Lsp1109I	GCAGC	3 cut(s)	845, 886, 1307
LweI	GCATC	4 cut(s)	397, 733, 752, 852
MaeI	CTAG	2 cut(s)	855, 866
MaeII	ACGT	2 cut(s)	361, 1106
MalI	GATC	8 cut(s)	10, 50, 235, 591, 849, 1015, 1095, 1136
MboI	GATC	8 cut(s)	8, 48, 233, 589, 847, 1013, 1093, 1134
MfeI	CAATTG	2 cut(s)	179, 747
MflI	RGATCY	3 cut(s)	8, 233, 589
MhlI	GDGCHC	2 cut(s)	375, 982
MluCI	AATT	8 cut(s)	126, 179, 254, 616, 635, 747, 1220, 1272
MlyI	GAGTC	2 cut(s)	1052, 1190
MmeI	TCCRAC	2 cut(s)	781, 991
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	7 cut(s)	138, 147, 384, 423, 734, 992, 1041
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	2 cut(s)	582, 975
MspR9I	CCNGG	2 cut(s)	401, 1291
MunI	CAATTG	2 cut(s)	179, 747
MvaI	CCWGG	2 cut(s)	401, 1291
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	8 cut(s)	8, 48, 233, 589, 847, 1013, 1093, 1134
NlaIII	CATG	5 cut(s)	116, 359, 597, 650, 971
NlaIV	GGNNCC	4 cut(s)	285, 591, 973, 1288
PaeR7I	CTCGAG	1 cut(s)	1342
PcsI	WCGNNNNNNNCGW	1 cut(s)	1134
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	4 cut(s)	116, 172, 318, 692
Pfl23II	CGTACG	1 cut(s)	1125
PkrI	GCNGC	3 cut(s)	835, 901, 1322
PleI	GAGTC	2 cut(s)	1052, 1189
PpsI	GAGTC	2 cut(s)	1052, 1189
Ppu21I	YACGTR	1 cut(s)	1107
Psp124BI	GAGCTC	1 cut(s)	982
Psp6I	CCWGG	2 cut(s)	399, 1289
PspGI	CCWGG	2 cut(s)	399, 1289
PspLI	CGTACG	1 cut(s)	1125
PspN4I	GGNNCC	4 cut(s)	285, 591, 973, 1288
PspPI	GGNCC	1 cut(s)	754
PsuI	RGATCY	3 cut(s)	8, 233, 589
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	6 cut(s)	101, 811, 1027, 1105, 1127, 1172
RsaNI	GTAC	6 cut(s)	100, 810, 1026, 1104, 1126, 1171
SacI	GAGCTC	1 cut(s)	982
SaqAI	TTAA	7 cut(s)	138, 147, 384, 423, 734, 992, 1041
SatI	GCNGC	3 cut(s)	834, 900, 1321
Sau3AI	GATC	8 cut(s)	8, 48, 233, 589, 847, 1013, 1093, 1134
Sau96I	GGNCC	1 cut(s)	754
ScaI	AGTACT	1 cut(s)	1027
SchI	GAGTC	2 cut(s)	1052, 1190
ScrFI	CCNGG	2 cut(s)	401, 1291
SduI	GDGCHC	2 cut(s)	375, 982
SfaNI	GCATC	4 cut(s)	397, 733, 752, 852
Sfr274I	CTCGAG	1 cut(s)	1342
SinI	GGWCC	1 cut(s)	754
SlaI	CTCGAG	1 cut(s)	1342
SmlI	CTYRAG	1 cut(s)	1342
SmoI	CTYRAG	1 cut(s)	1342
Sse9I	AATT	8 cut(s)	126, 179, 254, 616, 635, 747, 1220, 1272
SsiI	CCGC	2 cut(s)	230, 518
SspI	AATATT	5 cut(s)	199, 209, 350, 382, 1039
SspMI	CTAG	2 cut(s)	855, 866
SstI	GAGCTC	1 cut(s)	982
StyD4I	CCNGG	2 cut(s)	399, 1289
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	294, 1177
TaiI	ACGT	2 cut(s)	364, 1109
TasI	AATT	8 cut(s)	126, 179, 254, 616, 635, 747, 1220, 1272
TatI	WGTACW	3 cut(s)	99, 1025, 1170
TfiI	GAWTC	4 cut(s)	116, 172, 318, 692
Tru1I	TTAA	7 cut(s)	138, 147, 384, 423, 734, 992, 1041
Tru9I	TTAA	7 cut(s)	138, 147, 384, 423, 734, 992, 1041
TscAI	CASTG	1 cut(s)	1180
TseI	GCWGC	3 cut(s)	833, 899, 1320
TspDTI	ATGAA	4 cut(s)	177, 372, 468, 635
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	1180
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	754
XapI	RAATTY	4 cut(s)	254, 635, 1220, 1272
XbaI	TCTAGA	1 cut(s)	854
XhoI	CTCGAG	1 cut(s)	1342
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	2 cut(s)	855, 866
ZrmI	AGTACT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.