Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0015688

Physical Location & Seq

Genomic Coordinates Forward (+)

28184914 .. 28190274

Gene Structure 5361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG284000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGACTCGATTGGTGATGGGACGTCACAGACTCCAACTCAGTCTAGCATCGGAACTACACCAGCTTCGGCTGAAGCCGGACAACTCCTCATGTCTCCTCCTGCCGCTGCAACACCATATTCTGCAGCAACCGGTGAAGCTCAAGAACTTGGGAAGAGGAAGAACCAGTCAGAAGAGCTTCAGAGTATATATACGATTTGCTCGGATCAAAATTTGCTGCCAAACAAGGCCTTAGGAATTAGATTTTCGAACCTGAGGGAAGAAATTGGAGACATCGAAGCCATGGGTGATGAGAGCGAGGAGGCGTTTGAGAGCTTCCTGCGGAGGAGAGAGAGAGTCGGCGCGGAGGAGAGAGAGACGGCGCCGGAGGCGAGAGAGTCGGCGCCGGAGGCGAGAGAGTCGGCGCCGGAGGCGAGAGAGTCGGCGTGGAGGAGAGAGAGACAGCGCCGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.61

Weight (kDa)

4.79

Isoelectric Point (pI)

86.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13250 FvH4_7g13250 FvH4_7g13250 FvH4_7g13250
rosa_laevigata	RLG00000028335
rosa_multiflora	Rmu_sc0002244.1_g000032 Rmu_ssc0000172.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302940
rosa_rugosa	Rorug01G0228300
rosa_samantha	Rh1AG006000 Rh1AG241500 Rh1BG212700 Rh1CG225400 Rh1DG238900 Rh3BG284000
rosa_wichuraiana	Rw1G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccB1I	GGYRCC	3 cut(s)	361, 382, 403
AccII	CGCG	1 cut(s)	344
AciI	CCGC	3 cut(s)	105, 322, 344
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	2 cut(s)	93, 164
AcyI	GRCGYC	4 cut(s)	23, 362, 383, 404
AgeI	ACCGGT	1 cut(s)	131
AluBI	AGCT	4 cut(s)	65, 140, 178, 315
AluI	AGCT	4 cut(s)	65, 140, 178, 315
Alw26I	GTCTC	4 cut(s)	99, 264, 350, 433
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	107, 125, 217
ApoI	RAATTY	1 cut(s)	211
AsiGI	ACCGGT	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	5 cut(s)	344, 364, 385, 406, 447
AsuHPI	GGTGA	3 cut(s)	26, 146, 299
AsuII	TTCGAA	1 cut(s)	248
AxyI	CCTNAGG	2 cut(s)	232, 254
BanI	GGYRCC	3 cut(s)	361, 382, 403
BbvI	GCAGC	3 cut(s)	94, 137, 204
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	375
BcoDI	GTCTC	4 cut(s)	99, 264, 350, 433
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	4 cut(s)	365, 386, 407, 448
BisI	GCNGC	4 cut(s)	105, 108, 126, 218
BlsI	GCNGC	4 cut(s)	106, 109, 127, 219
BmiI	GGNNCC	3 cut(s)	363, 384, 405
BmsI	GCATC	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	126
BsaHI	GRCGYC	4 cut(s)	23, 362, 383, 404
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	166
Bse21I	CCTNAGG	2 cut(s)	232, 254
BseDI	CCNNGG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	53, 245
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	6 cut(s)	77, 87, 314, 340, 362, 445
BseXI	GCAGC	3 cut(s)	94, 137, 204
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	3 cut(s)	361, 382, 403
BshTI	ACCGGT	1 cut(s)	131
BsiSI	CCGG	6 cut(s)	78, 132, 365, 386, 407, 448
BslFI	GGGAC	1 cut(s)	34
BsmAI	GTCTC	4 cut(s)	99, 264, 350, 433
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	3 cut(s)	105, 322, 344
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	52, 246
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	363, 384, 405
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	248
BspT107I	GGYRCC	3 cut(s)	361, 382, 403
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	4 cut(s)	23, 362, 383, 404
BssT1I	CCWWGG	1 cut(s)	282
Bst6I	CTCTTC	2 cut(s)	149, 168
BstACI	GRCGYC	4 cut(s)	23, 362, 383, 404
BstBI	TTCGAA	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	39, 232, 254
BstDSI	CCRYGG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	4 cut(s)	365, 386, 407, 448
BstHHI	GCGC	5 cut(s)	344, 364, 385, 406, 447
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	4 cut(s)	99, 264, 350, 433
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 389, 410
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	94, 137, 204
Bsu36I	CCTNAGG	2 cut(s)	232, 254
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	282
CfoI	GCGC	5 cut(s)	344, 364, 385, 406, 447
Cfr10I	RCCGGY	1 cut(s)	131
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	2 cut(s)	91, 283
CviJI	RGCY	8 cut(s)	65, 71, 77, 140, 178, 230, 281, 315
CviKI_1	RGCY	8 cut(s)	65, 71, 77, 140, 178, 230, 281, 315
DdeI	CTNAG	3 cut(s)	39, 232, 254
DinI	GGCGCC	3 cut(s)	363, 384, 405
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	149, 168
EarI	CTCTTC	2 cut(s)	149, 168
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	93, 164
Eco81I	CCTNAGG	2 cut(s)	232, 254
EcoT14I	CCWWGG	1 cut(s)	282
EgeI	GGCGCC	3 cut(s)	363, 384, 405
EheI	GGCGCC	3 cut(s)	363, 384, 405
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	2 cut(s)	94, 286
FaiI	YATR	6 cut(s)	92, 118, 188, 190, 192, 284
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	90, 282
Fnu4HI	GCNGC	4 cut(s)	105, 108, 126, 218
Fsp4HI	GCNGC	4 cut(s)	105, 108, 126, 218
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	5 cut(s)	343, 363, 384, 405, 446
GluI	GCNGC	4 cut(s)	105, 108, 126, 218
HaeII	RGCGCY	4 cut(s)	365, 386, 407, 448
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	6 cut(s)	78, 132, 365, 386, 407, 448
HhaI	GCGC	5 cut(s)	344, 364, 385, 406, 447
Hin1I	GRCGYC	4 cut(s)	23, 362, 383, 404
Hin1II	CATG	2 cut(s)	94, 286
Hin6I	GCGC	5 cut(s)	342, 362, 383, 404, 445
HinP1I	GCGC	5 cut(s)	342, 362, 383, 404, 445
HinfI	GANTC	6 cut(s)	5, 31, 336, 377, 398, 419
HpaII	CCGG	6 cut(s)	78, 132, 365, 386, 407, 448
HphI	GGTGA	3 cut(s)	26, 146, 299
Hpy188I	TCNGA	4 cut(s)	53, 172, 183, 205
Hpy188III	TCNNGA	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	110, 125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 389, 410
HpyF3I	CTNAG	3 cut(s)	39, 232, 254
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	4 cut(s)	23, 362, 383, 404
Hsp92II	CATG	2 cut(s)	94, 286
HspAI	GCGC	5 cut(s)	342, 362, 383, 404, 445
KasI	GGCGCC	3 cut(s)	361, 382, 403
Kzo9I	GATC	1 cut(s)	205
LguI	GCTCTTC	1 cut(s)	168
Lsp1109I	GCAGC	3 cut(s)	94, 137, 204
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	4 cut(s)	166, 172, 185, 272
MluCI	AATT	3 cut(s)	211, 237, 264
Mly113I	GGCGCC	3 cut(s)	362, 383, 404
MlyI	GAGTC	5 cut(s)	25, 345, 386, 407, 428
MmeI	TCCRAC	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	6 cut(s)	78, 132, 365, 386, 407, 448
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	3 cut(s)	368, 389, 410
NarI	GGCGCC	3 cut(s)	362, 383, 404
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	94, 286
NlaIV	GGNNCC	3 cut(s)	363, 384, 405
NmuCI	GTSAC	1 cut(s)	24
NspV	TTCGAA	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	106, 109, 127, 219
PleI	GAGTC	5 cut(s)	25, 344, 385, 406, 427
PluTI	GGCGCC	3 cut(s)	365, 386, 407
PpsI	GAGTC	5 cut(s)	25, 344, 385, 406, 427
PspN4I	GGNNCC	3 cut(s)	363, 384, 405
PstI	CTGCAG	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	168
SatI	GCNGC	4 cut(s)	105, 108, 126, 218
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	5 cut(s)	25, 345, 386, 407, 428
SetI	ASST	7 cut(s)	26, 67, 142, 180, 255, 317, 455
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	123
SfoI	GGCGCC	3 cut(s)	363, 384, 405
SfuI	TTCGAA	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	3 cut(s)	211, 237, 264
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	3 cut(s)	105, 322, 344
SspDI	GGCGCC	3 cut(s)	361, 382, 403
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	8, 248, 276
TasI	AATT	3 cut(s)	211, 237, 264
TauI	GCSGC	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	3 cut(s)	107, 125, 217
Tsp45I	GTSAC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	1 cut(s)	45
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.