Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017010

Physical Location & Seq

Genomic Coordinates Forward (+)

27175719 .. 27177395

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028730

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTACGAGTCTGAGAATTCTGATTTGGAGTCTGATAGTCTGATTCCATCTTCACTCCACAGAGAGGGATTGATTTCCGTCTCAAATCAATATTCCGTCCCTAACCTGCATTTGATCACTCGGCACGAGGTTATTGAGCTTCCTCGAATGGAGACAAAGCTCCAGCTTTCTGGAGATGGCGATCTTCTTCATTTTAAGAGAAGATGCACAGGCTGCTTCGAGTCTTGCTGGGACAATGCTTGGATGAGGATGTTGCCTTCTAACACAGCTATTGCACATGTTAGCCCAACAGAGATATGCCTGCAATTTGCTTCGACAAGGAAACAAATAATAATGAACTCAGAAACCCCTGAAGCTCAAGCGTTGGAGAAGTTTTGCATTTCTTGGATTGAGAAAAGAGTGAACGAGGTTGAGCAGTATTACTTGAGGAAAGGCAGTCTACAACCAACCACTTTGAAGGAGAAAGACAGAGATAAACATTTTAATACAATTAAGAAGCAGCAACAAGATGCATCATGTAGGGAAGCCGTTGCTGCAAAGAGGATGCGAGACCTGTTGAACGATAGTGACATTTTTGCCCCTACATTCTCGATGGCTTTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

202

Amino Acids

23.18

Weight (kDa)

6.09

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0253301 RchiOBHm_Chr7g0229551
rosa_laevigata	RLG00000028730
rosa_multiflora	Rmu_sc0019866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143890 Rroxscaffold_4G00331560 Rroxscaffold_7G00164500 Rroxscaffold_7G00166850
rosa_samantha	Rh1DG067900 Rh1DG439300 Rh2AG137200 Rh4BG079100
rosa_wichuraiana	Rw1G005220 Rw7G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	439
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	457, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	5 cut(s)	139, 160, 166, 269, 356
AluI	AGCT	5 cut(s)	139, 160, 166, 269, 356
Alw26I	GTCTC	3 cut(s)	85, 146, 543
ApeKI	GCWGC	3 cut(s)	213, 499, 533
ApoI	RAATTY	1 cut(s)	16
BauI	CACGAG	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	200, 511, 520
BccI	CCATC	3 cut(s)	55, 170, 586
BceAI	ACGGC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	85, 146, 543
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	3 cut(s)	214, 500, 534
BlsI	GCNGC	3 cut(s)	215, 501, 535
BmsI	GCATC	4 cut(s)	194, 499, 521, 534
BpmI	CTGGAG	2 cut(s)	146, 192
BpuEI	CTTGAG	2 cut(s)	342, 445
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	180
BseGI	GGATG	3 cut(s)	249, 255, 549
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	354
BseXI	GCAGC	3 cut(s)	200, 511, 520
BseYI	CCCAGC	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	83, 245
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	3 cut(s)	85, 146, 543
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	83, 245
Bso31I	GGTCTC	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	114, 181
BspCNI	CTCAG	2 cut(s)	4, 353
BspMI	ACCTGC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	543
BssMI	GATC	2 cut(s)	114, 181
BssSI	CACGAG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	12, 340
BstF5I	GGATG	3 cut(s)	249, 255, 549
BstKTI	GATC	2 cut(s)	117, 184
BstMAI	GTCTC	3 cut(s)	85, 146, 543
BstMBI	GATC	2 cut(s)	114, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 533
BstNSI	RCATGY	1 cut(s)	281
BstV1I	GCAGC	3 cut(s)	200, 511, 520
BstXI	CCANNNNNNTGG	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	249, 255, 549
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	278, 516
CviJI	RGCY	9 cut(s)	139, 160, 166, 213, 269, 285, 356, 527, 596
CviKI_1	RGCY	9 cut(s)	139, 160, 166, 213, 269, 285, 356, 527, 596
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	12, 340
DpnI	GATC	2 cut(s)	116, 183
DpnII	GATC	2 cut(s)	114, 181
Eco31I	GGTCTC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	281, 519
FaiI	YATR	3 cut(s)	279, 298, 517
FaqI	GGGAC	2 cut(s)	83, 245
FatI	CATG	2 cut(s)	277, 515
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	214, 500, 534
FokI	GGATG	3 cut(s)	256, 262, 556
Fsp4HI	GCNGC	3 cut(s)	214, 500, 534
GluI	GCNGC	3 cut(s)	214, 500, 534
GsaI	CCCAGC	1 cut(s)	232
GsuI	CTGGAG	2 cut(s)	146, 192
Hin1II	CATG	2 cut(s)	281, 519
HinfI	GANTC	4 cut(s)	8, 29, 43, 221
Hpy166II	GTNNAC	2 cut(s)	403, 440
Hpy188I	TCNGA	5 cut(s)	13, 22, 34, 42, 343
Hpy188III	TCNNGA	2 cut(s)	171, 589
Hpy8I	GTNNAC	2 cut(s)	403, 440
HpyAV	CCTTC	2 cut(s)	267, 451
HpyCH4V	TGCA	7 cut(s)	109, 207, 275, 304, 378, 512, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 533
HpyF3I	CTNAG	2 cut(s)	12, 340
Hsp92II	CATG	2 cut(s)	281, 519
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	114, 181
LmnI	GCTCC	1 cut(s)	165
LpnPI	CCDG	8 cut(s)	119, 156, 176, 195, 214, 314, 363, 566
Lsp1109I	GCAGC	3 cut(s)	200, 511, 520
LweI	GCATC	4 cut(s)	194, 499, 521, 534
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	2 cut(s)	116, 183
MboI	GATC	2 cut(s)	114, 181
MboII	GAAGA	4 cut(s)	42, 176, 179, 213
MluCI	AATT	3 cut(s)	16, 305, 489
MlyI	GAGTC	3 cut(s)	17, 38, 230
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	7 cut(s)	58, 121, 153, 240, 400, 420, 534
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	3 cut(s)	195, 483, 492
MwoI	GCNNNNNNNGC	2 cut(s)	213, 533
NdeII	GATC	2 cut(s)	114, 181
NlaIII	CATG	2 cut(s)	281, 519
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	566
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	281
PciI	ACATGT	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	215, 501, 535
PleI	GAGTC	3 cut(s)	16, 37, 229
PpsI	GAGTC	3 cut(s)	16, 37, 229
PscI	ACATGT	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	228
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	195, 483, 492
SatI	GCNGC	3 cut(s)	214, 500, 534
Sau3AI	GATC	2 cut(s)	114, 181
SchI	GAGTC	3 cut(s)	17, 38, 230
SfaNI	GCATC	4 cut(s)	194, 499, 521, 534
SmlI	CTYRAG	2 cut(s)	357, 424
SmoI	CTYRAG	2 cut(s)	357, 424
Sse9I	AATT	3 cut(s)	16, 305, 489
SspI	AATATT	1 cut(s)	92
TaqI	TCGA	4 cut(s)	145, 219, 314, 590
TasI	AATT	3 cut(s)	16, 305, 489
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	195, 483, 492
Tru9I	TTAA	3 cut(s)	195, 483, 492
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	3 cut(s)	213, 499, 533
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	179, 350
TspGWI	ACGGA	2 cut(s)	67, 85
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.