Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017010

Physical Location & Seq

Genomic Coordinates Reverse (-)

13888584 .. 13890807

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG079100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAGGGTGGTGATGTTGCTGAGCCCTTAAGCTCTTTAAATCACTGGGTAATTGAGTTTGTGGTGGATTTGCAGCTTGAGAAAAGAGTAAACGAGGTCGAGCAGTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCGAAGGAGAAAGACAGAGATAAACATTTTGATACAATTAAGAAGCAGCAGCAAGATGCATCACGTAAGGAAGCCGCTGCTGCTAAGAGGATGCGAGATCTGTTAACTTTTCCGCAATCTTCAAACAGGTATGCACTAACCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

95

Amino Acids

11.0

Weight (kDa)

9.26

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0253301 RchiOBHm_Chr7g0229551
rosa_laevigata	RLG00000028730
rosa_multiflora	Rmu_sc0019866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143890 Rroxscaffold_4G00331560 Rroxscaffold_7G00164500 Rroxscaffold_7G00166850
rosa_samantha	Rh1DG067900 Rh1DG439300 Rh2AG137200 Rh4BG079100
rosa_wichuraiana	Rw1G005220 Rw7G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	216, 254
AflII	CTTAAG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	264
AluBI	AGCT	2 cut(s)	33, 76
AluI	AGCT	2 cut(s)	33, 76
ApeKI	GCWGC	5 cut(s)	73, 187, 190, 218, 221
AsuHPI	GGTGA	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	27
BbvI	GCAGC	5 cut(s)	85, 199, 202, 205, 208
BfrI	CTTAAG	1 cut(s)	28
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	6 cut(s)	74, 188, 191, 216, 219, 222
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	6 cut(s)	75, 189, 192, 217, 220, 223
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	3 cut(s)	187, 209, 222
BmuI	ACTGGG	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	98, 133
BsaAI	YACGTR	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	50
BseXI	GCAGC	5 cut(s)	85, 199, 202, 205, 208
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	216, 254
BspCNI	CTCAG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	21, 225
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstV1I	GCAGC	5 cut(s)	85, 199, 202, 205, 208
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	43
CciI	TCATGA	1 cut(s)	284
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	4 cut(s)	25, 33, 76, 215
CviKI_1	RGCY	4 cut(s)	25, 33, 76, 215
DdeI	CTNAG	2 cut(s)	21, 225
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	288
FaiI	YATR	2 cut(s)	273, 286
FatI	CATG	1 cut(s)	284
Fnu4HI	GCNGC	6 cut(s)	74, 188, 191, 216, 219, 222
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	6 cut(s)	74, 188, 191, 216, 219, 222
GluI	GCNGC	6 cut(s)	74, 188, 191, 216, 219, 222
Hin1II	CATG	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HpaI	GTTAAC	1 cut(s)	246
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	91, 246
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	2 cut(s)	91, 246
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	73, 130, 200, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	21, 225
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	288
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	2 cut(s)	31, 253
Lsp1109I	GCAGC	5 cut(s)	85, 199, 202, 205, 208
LweI	GCATC	3 cut(s)	187, 209, 222
MaeII	ACGT	1 cut(s)	205
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	252
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	51, 177
MnlI	CCTC	3 cut(s)	88, 108, 222
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	4 cut(s)	29, 38, 180, 245
MspA1I	CMGCKG	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	143
PagI	TCATGA	1 cut(s)	284
PkrI	GCNGC	6 cut(s)	75, 189, 192, 217, 220, 223
Ppu21I	YACGTR	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	238
SaqAI	TTAA	4 cut(s)	29, 38, 180, 245
SatI	GCNGC	6 cut(s)	74, 188, 191, 216, 219, 222
Sau3AI	GATC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	35, 78, 99, 208, 272, 284
SfaNI	GCATC	3 cut(s)	187, 209, 222
SfuI	TTCGAA	1 cut(s)	143
SgeI	CNNG	9 cut(s)	58, 89, 106, 112, 124, 206, 216, 248, 280
SmlI	CTYRAG	3 cut(s)	28, 77, 112
SmoI	CTYRAG	3 cut(s)	28, 77, 112
Sse9I	AATT	2 cut(s)	51, 177
SsiI	CCGC	2 cut(s)	216, 254
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	99, 143
TasI	AATT	2 cut(s)	51, 177
TauI	GCSGC	1 cut(s)	218
Tru1I	TTAA	4 cut(s)	29, 38, 180, 245
Tru9I	TTAA	4 cut(s)	29, 38, 180, 245
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	5 cut(s)	73, 187, 190, 218, 221
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	28
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.