Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017010

Physical Location & Seq

Genomic Coordinates Forward (+)

48708971 .. 48709975

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTAGCCCAAGAGAGGTTCTCGAAGATATGGCTGCAATTTGCTTCGACAAGGAAACAAATAATAATGAACTCAGAAACCCCTGAAGCTCAAGCGTTGGAGAAGCTTGAGAAAAGAGTGAACGAGGTTGAGCAGTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCGAAGGAGAAAGACGGAGATAAACATTTTAATACAATTAAGAAGCAGCAACAAGATGCATCATGTAGGGACGCCGCTGCTGCAAAGAGGATGCGAGATCTGTTGAATGATAGTGACATTTTTGCCCCTACATTCTCGCTGGCTTTTACCCGAGTACCCCGACGAGGACTGGATGTGGCTCTTTTTCATTGCTCCACGAAGAGAGAGAGCAATCTTGAGAGAGTTCATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

134

Amino Acids

15.56

Weight (kDa)

9.36

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0253301 RchiOBHm_Chr7g0229551
rosa_laevigata	RLG00000028730
rosa_multiflora	Rmu_sc0019866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143890 Rroxscaffold_4G00331560 Rroxscaffold_7G00164500 Rroxscaffold_7G00166850
rosa_samantha	Rh1DG067900 Rh1DG439300 Rh2AG137200 Rh4BG079100
rosa_wichuraiana	Rw1G005220 Rw7G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	15, 335
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	2 cut(s)	89, 106
AluI	AGCT	2 cut(s)	89, 106
Ama87I	CYCGRG	1 cut(s)	321
ApeKI	GCWGC	4 cut(s)	34, 217, 248, 251
AsuII	TTCGAA	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	321
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BbvI	GCAGC	4 cut(s)	21, 229, 235, 238
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	5 cut(s)	35, 218, 246, 249, 252
BlsI	GCNGC	5 cut(s)	36, 219, 247, 250, 253
BmeT110I	CYCGRG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	217, 239, 252
BplI	GAGNNNNNCTC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	3 cut(s)	75, 128, 163
BsaHI	GRCGYC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 335
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	267, 349
BseLI	CCNNNNNNNGG	2 cut(s)	15, 335
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	345
BseXI	GCAGC	4 cut(s)	21, 229, 235, 238
BsiHKCI	CYCGRG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	15, 335
BsmFI	GGGAC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	397
BspT104I	TTCGAA	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	345
BssMI	GATC	1 cut(s)	268
BssNI	GRCGYC	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	267, 349
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstV1I	GCAGC	4 cut(s)	21, 229, 235, 238
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	267, 349
Cac8I	GCNNGC	1 cut(s)	312
CciI	TCATGA	1 cut(s)	397
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	2 cut(s)	234, 398
CviJI	RGCY	6 cut(s)	8, 34, 89, 106, 314, 350
CviKI_1	RGCY	6 cut(s)	8, 34, 89, 106, 314, 350
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	232
FaeI	CATG	2 cut(s)	237, 401
FaiI	YATR	3 cut(s)	31, 235, 399
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	233, 397
Fnu4HI	GCNGC	5 cut(s)	35, 218, 246, 249, 252
FokI	GGATG	2 cut(s)	274, 356
Fsp4HI	GCNGC	5 cut(s)	35, 218, 246, 249, 252
GluI	GCNGC	5 cut(s)	35, 218, 246, 249, 252
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	237, 401
HindIII	AAGCTT	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	22, 386, 398
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	37, 160, 230, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	73
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	237, 401
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	3 cut(s)	96, 296, 326
Lsp1109I	GCAGC	4 cut(s)	21, 229, 235, 238
LweI	GCATC	3 cut(s)	217, 239, 252
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	37, 382
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	2 cut(s)	38, 207
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	9, 118, 138, 252, 329
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	2 cut(s)	201, 210
MspA1I	CMGCKG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	237, 401
NmuCI	GTSAC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	173
PagI	TCATGA	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	36, 219, 247, 250, 253
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SaqAI	TTAA	2 cut(s)	201, 210
SatI	GCNGC	5 cut(s)	35, 218, 246, 249, 252
Sau3AI	GATC	1 cut(s)	268
SetI	ASST	4 cut(s)	20, 91, 108, 129
SfaNI	GCATC	3 cut(s)	217, 239, 252
SfuI	TTCGAA	1 cut(s)	173
SmlI	CTYRAG	4 cut(s)	90, 107, 142, 386
SmoI	CTYRAG	4 cut(s)	90, 107, 142, 386
Sse9I	AATT	2 cut(s)	38, 207
SsiI	CCGC	1 cut(s)	246
TaqI	TCGA	3 cut(s)	23, 47, 173
TasI	AATT	2 cut(s)	38, 207
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	201, 210
Tru9I	TTAA	2 cut(s)	201, 210
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	4 cut(s)	34, 217, 248, 251
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	83, 347, 386
TspGWI	ACGGA	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.