Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0017010

Physical Location & Seq

Genomic Coordinates Reverse (-)

64954866 .. 64962652

Gene Structure 7787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG439300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCTGGCAACAGAAGCGTCAAATGGTTTCGAATGTCTTGATTTTGGATGGCACACACTTGAGAAAAGAGTGAACGAGGTCGAGCAGTATTACTTGAGGAAAGGTAGTTTGCAACCAACCACTTCAATGGAGAAAGACAGGGACACACACTTAAATACAATTAAGAAGCAGCAGCAAGATGCATCACGTAGGGAAGCCGCTGCTGCAAAGAGGATGCGAGATCTGTTGAATATGTTTTTCCACATTAATATTCAAAGACTCCGAAAGGGTGTTAGTGCTGTTGTGGTCCAAAAGGGTGTTAGTGCTGTTGTGTTTAATACTGAGGGAACCAAAAATCCTCCTCTGACAAAGAACGAGCTTAGGGCCAAAGTTATACAGAAAGCAGACAAGATGAAGAAAAAGAGGGATGCACAGAAGGCAACAGCTTTTGCTGCTGCAAAATCAACCACTGCTAAAGCAGCAACAAAATCGAGCACAACTTCAACCACTACCCGTGCTGCTACAACAATCAGTAAAGCTTCTGCCTCTGCAAAGGCAAAAACAATACTTAATAAGTCAGTAACCGGGAGAGTAGCTGCGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

195

Amino Acids

21.38

Weight (kDa)

10.33

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0253301 RchiOBHm_Chr7g0229551
rosa_laevigata	RLG00000028730
rosa_multiflora	Rmu_sc0019866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143890 Rroxscaffold_4G00331560 Rroxscaffold_7G00164500 Rroxscaffold_7G00166850
rosa_samantha	Rh1DG067900 Rh1DG439300 Rh2AG137200 Rh4BG079100
rosa_wichuraiana	Rw1G005220 Rw7G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	198, 578
AgsI	TTSAA	4 cut(s)	126, 229, 254, 483
AloI	GAACNNNNNNTCC	2 cut(s)	319, 351
AluBI	AGCT	4 cut(s)	358, 425, 518, 575
AluI	AGCT	4 cut(s)	358, 425, 518, 575
Alw21I	GWGCWC	1 cut(s)	476
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	9 cut(s)	169, 172, 200, 203, 431, 434, 458, 497, 575
AseI	ATTAAT	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	286, 363
AsuC2I	CCSGG	1 cut(s)	565
AsuII	TTCGAA	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	9 cut(s)	181, 184, 187, 190, 418, 421, 470, 484, 562
BccI	CCATC	1 cut(s)	42
BcgI	CGANNNNNNTGC	2 cut(s)	450, 484
BcnI	CCSGG	1 cut(s)	565
BglII	AGATCT	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	565
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	286, 363
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	5 cut(s)	169, 191, 204, 397, 571
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	80, 115
BpuMI	CCSGG	1 cut(s)	565
BsaAI	YACGTR	1 cut(s)	188
BseGI	GGATG	4 cut(s)	53, 219, 412, 586
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	9 cut(s)	181, 184, 187, 190, 418, 421, 470, 484, 562
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	198, 578
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	30
BssMI	GATC	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	188
BstBI	TTCGAA	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	321, 359
BstF5I	GGATG	4 cut(s)	53, 219, 412, 586
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 203, 416, 431, 458, 581
BstSCI	CCNGG	1 cut(s)	563
BstV1I	GCAGC	9 cut(s)	181, 184, 187, 190, 418, 421, 470, 484, 562
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	4 cut(s)	53, 219, 412, 586
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	286, 363
CseI	GACGC	1 cut(s)	6
CviJI	RGCY	6 cut(s)	197, 358, 365, 425, 518, 575
CviKI_1	RGCY	6 cut(s)	197, 358, 365, 425, 518, 575
DdeI	CTNAG	2 cut(s)	321, 359
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	184
FaiI	YATR	2 cut(s)	233, 374
FaqI	GGGAC	1 cut(s)	155
FokI	GGATG	3 cut(s)	60, 226, 419
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	1 cut(s)	564
HgaI	GACGC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	564
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	263, 345
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	6 cut(s)	112, 182, 206, 410, 437, 530
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 203, 416, 431, 458, 581
HpyF3I	CTNAG	2 cut(s)	321, 359
HpySE526I	ACGT	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	2 cut(s)	124, 577
Lsp1109I	GCAGC	9 cut(s)	181, 184, 187, 190, 418, 421, 470, 484, 562
LweI	GCATC	5 cut(s)	169, 191, 204, 397, 571
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	406
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	8 cut(s)	70, 90, 204, 316, 348, 351, 396, 535
Mph1103I	ATGCAT	1 cut(s)	184
MseI	TTAA	5 cut(s)	152, 162, 246, 315, 549
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	565
MwoI	GCNNNNNNNGC	6 cut(s)	14, 203, 416, 431, 458, 581
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	30
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	286, 363
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	5 cut(s)	152, 162, 246, 315, 549
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	286, 363
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	7 cut(s)	81, 106, 190, 360, 427, 520, 577
SfaNI	GCATC	5 cut(s)	169, 191, 204, 397, 571
SfuI	TTCGAA	1 cut(s)	30
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	59, 94
SmoI	CTYRAG	2 cut(s)	59, 94
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	2 cut(s)	198, 578
SspI	AATATT	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	563
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	30, 81, 470
TasI	AATT	1 cut(s)	159
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	5 cut(s)	152, 162, 246, 315, 549
Tru9I	TTAA	5 cut(s)	152, 162, 246, 315, 549
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	9 cut(s)	169, 172, 200, 203, 431, 434, 458, 497, 575
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	246
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.