Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019866.1

Orthogroup ID

OG0017010

Physical Location & Seq

Genomic Coordinates Reverse (-)

3265 .. 3807

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019866.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggagccaatgagttcatcaaacccagattctaaaagcgttggtgcggctgaagtggagggttttcgggattctgtcaatgaaatttcagcaaaagttaatacgcttgagaaaagagtgaacgaggtcgagcagtattacttgaggaaaggtagtctgcaaccaaccacttcgacggagaaagacagggatacacacttaaatacaattaagaagcagcaacaagatgcatcacgtagggaagtcgctgctgcaaagaggatgcaagatctgttgaatatgtttttccacaatcttcaaagaggtatgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

104

Amino Acids

11.86

Weight (kDa)

8.03

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0253301 RchiOBHm_Chr7g0229551
rosa_laevigata	RLG00000028730
rosa_multiflora	Rmu_sc0019866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143890 Rroxscaffold_4G00331560 Rroxscaffold_7G00164500 Rroxscaffold_7G00166850
rosa_samantha	Rh1DG067900 Rh1DG439300 Rh2AG137200 Rh4BG079100
rosa_wichuraiana	Rw1G005220 Rw7G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	277, 299
ApeKI	GCWGC	3 cut(s)	217, 248, 251
ApoI	RAATTY	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	229, 235, 238
BciVI	GTATCC	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	4 cut(s)	48, 218, 249, 252
BlsI	GCNGC	4 cut(s)	49, 219, 250, 253
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	217, 239, 252
BplI	GAGNNNNNCTC	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	128, 163
BsaAI	YACGTR	1 cut(s)	236
BseGI	GGATG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	229, 235, 238
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	6
BssMI	GATC	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstV1I	GCAGC	3 cut(s)	229, 235, 238
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	267
CviJI	RGCY	2 cut(s)	7, 50
CviKI_1	RGCY	2 cut(s)	7, 50
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	232
FaiI	YATR	2 cut(s)	281, 308
Fnu4HI	GCNGC	4 cut(s)	48, 218, 249, 252
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	4 cut(s)	48, 218, 249, 252
GluI	GCNGC	4 cut(s)	48, 218, 249, 252
HinfI	GANTC	2 cut(s)	29, 71
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	160, 230, 254, 265
HpySE526I	ACGT	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	2 cut(s)	39, 172
Lsp1109I	GCAGC	3 cut(s)	229, 235, 238
LweI	GCATC	3 cut(s)	217, 239, 252
MaeII	ACGT	1 cut(s)	235
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	287
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	2 cut(s)	84, 207
MnlI	CCTC	5 cut(s)	52, 118, 138, 252, 296
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	3 cut(s)	99, 200, 210
NdeII	GATC	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	29, 71
PkrI	GCNGC	4 cut(s)	49, 219, 250, 253
Ppu21I	YACGTR	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	268
SaqAI	TTAA	3 cut(s)	99, 200, 210
SatI	GCNGC	4 cut(s)	48, 218, 249, 252
Sau3AI	GATC	1 cut(s)	268
SetI	ASST	4 cut(s)	129, 154, 238, 307
SfaNI	GCATC	3 cut(s)	217, 239, 252
SmlI	CTYRAG	2 cut(s)	107, 142
SmoI	CTYRAG	2 cut(s)	107, 142
Sse9I	AATT	2 cut(s)	84, 207
SsiI	CCGC	1 cut(s)	47
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	129, 173
TasI	AATT	2 cut(s)	84, 207
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	29, 71
Tru1I	TTAA	3 cut(s)	99, 200, 210
Tru9I	TTAA	3 cut(s)	99, 200, 210
TseI	GCWGC	3 cut(s)	217, 248, 251
TspDTI	ATGAA	2 cut(s)	6, 96
TspGWI	ACGGA	1 cut(s)	191
XapI	RAATTY	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.