Transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0253301 RchiOBHm_Chr7g0229551 |
| rosa_laevigata | RLG00000028730 |
| rosa_multiflora | Rmu_sc0019866.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00143890 Rroxscaffold_4G00331560 Rroxscaffold_7G00164500 Rroxscaffold_7G00166850 |
| rosa_samantha | Rh1DG067900 Rh1DG439300 Rh2AG137200 Rh4BG079100 |
| rosa_wichuraiana | Rw1G005220 Rw7G033140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 237 |
| AgsI | TTSAA | 3 cut(s) | 65, 268, 290 |
| AluBI | AGCT | 2 cut(s) | 91, 97 |
| AluI | AGCT | 2 cut(s) | 91, 97 |
| ApeKI | GCWGC | 4 cut(s) | 91, 94, 239, 242 |
| BbvI | GCAGC | 4 cut(s) | 78, 106, 226, 229 |
| BccI | CCATC | 1 cut(s) | 160 |
| BciVI | GTATCC | 1 cut(s) | 175 |
| BfmI | CTRYAG | 1 cut(s) | 92 |
| BfuI | GTATCC | 1 cut(s) | 175 |
| BglII | AGATCT | 1 cut(s) | 259 |
| BisI | GCNGC | 5 cut(s) | 92, 95, 237, 240, 243 |
| BlsI | GCNGC | 5 cut(s) | 93, 96, 238, 241, 244 |
| BmsI | GCATC | 3 cut(s) | 208, 230, 243 |
| BpuEI | CTTGAG | 2 cut(s) | 119, 154 |
| BsaAI | YACGTR | 1 cut(s) | 227 |
| BseGI | GGATG | 1 cut(s) | 258 |
| BseXI | GCAGC | 4 cut(s) | 78, 106, 226, 229 |
| Bsp143I | GATC | 1 cut(s) | 259 |
| BspACI | CCGC | 1 cut(s) | 237 |
| BspMAI | CTGCAG | 1 cut(s) | 96 |
| BssMI | GATC | 1 cut(s) | 259 |
| BstBAI | YACGTR | 1 cut(s) | 227 |
| BstF5I | GGATG | 1 cut(s) | 258 |
| BstKTI | GATC | 1 cut(s) | 262 |
| BstMBI | GATC | 1 cut(s) | 259 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstSFI | CTRYAG | 1 cut(s) | 92 |
| BstV1I | GCAGC | 4 cut(s) | 78, 106, 226, 229 |
| BstX2I | RGATCY | 1 cut(s) | 259 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 166 |
| BstYI | RGATCY | 1 cut(s) | 259 |
| BsuI | GTATCC | 1 cut(s) | 175 |
| BtsCI | GGATG | 1 cut(s) | 258 |
| CviJI | RGCY | 3 cut(s) | 91, 97, 236 |
| CviKI_1 | RGCY | 3 cut(s) | 91, 97, 236 |
| DpnI | GATC | 1 cut(s) | 261 |
| DpnII | GATC | 1 cut(s) | 259 |
| EcoT22I | ATGCAT | 1 cut(s) | 223 |
| FaiI | YATR | 2 cut(s) | 23, 272 |
| Fnu4HI | GCNGC | 5 cut(s) | 92, 95, 237, 240, 243 |
| FokI | GGATG | 1 cut(s) | 265 |
| Fsp4HI | GCNGC | 5 cut(s) | 92, 95, 237, 240, 243 |
| GluI | GCNGC | 5 cut(s) | 92, 95, 237, 240, 243 |
| Hpy166II | GTNNAC | 2 cut(s) | 12, 112 |
| Hpy8I | GTNNAC | 2 cut(s) | 12, 112 |
| HpyAV | CCTTC | 2 cut(s) | 42, 46 |
| HpyCH4IV | ACGT | 1 cut(s) | 226 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 94, 151, 221, 245 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpySE526I | ACGT | 1 cut(s) | 226 |
| Kzo9I | GATC | 1 cut(s) | 259 |
| LpnPI | CCDG | 2 cut(s) | 69, 163 |
| Lsp1109I | GCAGC | 4 cut(s) | 78, 106, 226, 229 |
| LweI | GCATC | 3 cut(s) | 208, 230, 243 |
| MaeII | ACGT | 1 cut(s) | 226 |
| MalI | GATC | 1 cut(s) | 261 |
| MboI | GATC | 1 cut(s) | 259 |
| MboII | GAAGA | 2 cut(s) | 217, 278 |
| MflI | RGATCY | 1 cut(s) | 259 |
| MluCI | AATT | 2 cut(s) | 66, 198 |
| MnlI | CCTC | 5 cut(s) | 69, 109, 129, 243, 287 |
| Mph1103I | ATGCAT | 1 cut(s) | 223 |
| MseI | TTAA | 3 cut(s) | 191, 201, 311 |
| MslI | CAYNNNNRTG | 2 cut(s) | 40, 164 |
| MspA1I | CMGCKG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NdeII | GATC | 1 cut(s) | 259 |
| NsiI | ATGCAT | 1 cut(s) | 223 |
| PkrI | GCNGC | 5 cut(s) | 93, 96, 238, 241, 244 |
| Ppu21I | YACGTR | 1 cut(s) | 227 |
| PstI | CTGCAG | 1 cut(s) | 96 |
| PsuI | RGATCY | 1 cut(s) | 259 |
| RseI | CAYNNNNRTG | 2 cut(s) | 40, 164 |
| SaqAI | TTAA | 3 cut(s) | 191, 201, 311 |
| SatI | GCNGC | 5 cut(s) | 92, 95, 237, 240, 243 |
| Sau3AI | GATC | 1 cut(s) | 259 |
| SetI | ASST | 6 cut(s) | 44, 93, 99, 120, 145, 229 |
| SfaNI | GCATC | 3 cut(s) | 208, 230, 243 |
| SfcI | CTRYAG | 1 cut(s) | 92 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 40, 164 |
| SmlI | CTYRAG | 2 cut(s) | 98, 133 |
| SmoI | CTYRAG | 2 cut(s) | 98, 133 |
| Sse9I | AATT | 2 cut(s) | 66, 198 |
| SsiI | CCGC | 1 cut(s) | 237 |
| TaiI | ACGT | 1 cut(s) | 229 |
| TaqI | TCGA | 1 cut(s) | 164 |
| TasI | AATT | 2 cut(s) | 66, 198 |
| TauI | GCSGC | 1 cut(s) | 239 |
| Tru1I | TTAA | 3 cut(s) | 191, 201, 311 |
| Tru9I | TTAA | 3 cut(s) | 191, 201, 311 |
| TseI | GCWGC | 4 cut(s) | 91, 94, 239, 242 |
| Zsp2I | ATGCAT | 1 cut(s) | 223 |