Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017010

Physical Location & Seq

Genomic Coordinates Forward (+)

8198490 .. 8205378

Gene Structure 6889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAAGAGAAACCGAAAGTGAAGGAGAAAGTGGCGGATGGAGCTGAGCCGGTTATGGATGAAAAGACGATTTTACCACGCATCTGTTTCTTGCTTCGACACACGGGGTGCTGCTCGGTGCATCTTGTTTCTTGCGACGACACCTGGGGTGATGCTTCACTCCACCAAGAGGTAGATAGTGAAGGAAGTGGTGCTCGGAAGGTGCACGAGGCTGCTTCGAGTCTTGCGGGACAATGCTTGGATGAGGATTTTTGCATTTCTTGGATTGATCGGTTTGTGGTGGATTTGCGGCTTGAGAAAAGTGTGAACGAGGTTGAGCGGTATTACTTGAGGAAAGGCAGCCTGCAACCAACCACTTCTAAGGAGAAAGACAGAGATAAACATTTTAATACAATTAAGAAGCAGCAACAAGATGCATCATGTAGGGAAGCCGCTGCTGCAAAGAGGATGCGAGATCTGTTGAATGATAGTGACATTTTTGCCCCTACATTCTCGCTGGCTTTTACTGACTACCACTTTGGATGTGGCTCTTTTTCATTGCTCGACAAAGAGAGAGAGAGAGAGAGCAATCTTGAGAGAGTTCATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

196

Amino Acids

22.32

Weight (kDa)

5.7

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0253301 RchiOBHm_Chr7g0229551
rosa_laevigata	RLG00000028730
rosa_multiflora	Rmu_sc0019866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143890 Rroxscaffold_4G00331560 Rroxscaffold_7G00164500 Rroxscaffold_7G00166850
rosa_samantha	Rh1DG067900 Rh1DG439300 Rh2AG137200 Rh4BG079100
rosa_wichuraiana	Rw1G005220 Rw7G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	319
AciI	CCGC	5 cut(s)	35, 227, 289, 319, 432
AdeI	CACNNNGTG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	2 cut(s)	196, 207
Alw44I	GTGCAC	1 cut(s)	203
ApaLI	GTGCAC	1 cut(s)	203
ApeKI	GCWGC	6 cut(s)	111, 212, 339, 403, 434, 437
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AsuHPI	GGTGA	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	196, 207
BbvI	GCAGC	6 cut(s)	98, 199, 351, 415, 421, 424
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	145
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	8 cut(s)	112, 213, 290, 340, 404, 432, 435, 438
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	8 cut(s)	113, 214, 291, 341, 405, 433, 436, 439
Bme1390I	CCNGG	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	6 cut(s)	90, 130, 142, 403, 425, 438
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	314, 349
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	5 cut(s)	43, 64, 247, 453, 527
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	6 cut(s)	98, 199, 351, 415, 421, 424
BsiHKAI	GWGCWC	2 cut(s)	196, 207
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	196, 207
Bsp143I	GATC	2 cut(s)	268, 454
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	5 cut(s)	35, 227, 289, 319, 432
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	583
BsrBI	CCGCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	268, 454
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	344, 498
BstDEI	CTNAG	2 cut(s)	45, 360
BstF5I	GGATG	5 cut(s)	43, 64, 247, 453, 527
BstKTI	GATC	2 cut(s)	271, 457
BstMBI	GATC	2 cut(s)	268, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 437
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	6 cut(s)	98, 199, 351, 415, 421, 424
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BtsCI	GGATG	5 cut(s)	43, 64, 247, 453, 527
Cac8I	GCNNGC	2 cut(s)	344, 498
CciI	TCATGA	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	49
CviAII	CATG	2 cut(s)	420, 584
CviJI	RGCY	8 cut(s)	44, 49, 212, 292, 342, 431, 500, 528
CviKI_1	RGCY	8 cut(s)	44, 49, 212, 292, 342, 431, 500, 528
DdeI	CTNAG	2 cut(s)	45, 360
DpnI	GATC	2 cut(s)	270, 456
DpnII	GATC	2 cut(s)	268, 454
DraIII	CACNNNGTG	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	418
FaeI	CATG	2 cut(s)	423, 587
FaiI	YATR	3 cut(s)	56, 421, 585
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	419, 583
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	8 cut(s)	112, 213, 290, 340, 404, 432, 435, 438
FokI	GGATG	5 cut(s)	50, 71, 254, 460, 534
Fsp4HI	GCNGC	8 cut(s)	112, 213, 290, 340, 404, 432, 435, 438
GluI	GCNGC	8 cut(s)	112, 213, 290, 340, 404, 432, 435, 438
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	2 cut(s)	423, 587
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	205, 307
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	572, 584
Hpy8I	GTNNAC	2 cut(s)	205, 307
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	16, 176, 193
HpyCH4V	TGCA	6 cut(s)	121, 205, 255, 346, 416, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 437
HpyF3I	CTNAG	2 cut(s)	45, 360
Hsp92II	CATG	2 cut(s)	423, 587
Kzo9I	GATC	2 cut(s)	268, 454
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	5 cut(s)	63, 130, 157, 356, 482
Lsp1109I	GCAGC	6 cut(s)	98, 199, 351, 415, 421, 424
LweI	GCATC	6 cut(s)	90, 130, 142, 403, 425, 438
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	2 cut(s)	270, 456
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	2 cut(s)	268, 454
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	196, 207
MluCI	AATT	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	6 cut(s)	163, 202, 238, 304, 324, 438
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	2 cut(s)	387, 396
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	41, 437
NdeII	GATC	2 cut(s)	268, 454
NlaIII	CATG	2 cut(s)	423, 587
NmuCI	GTSAC	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	418
PagI	TCATGA	1 cut(s)	583
PkrI	GCNGC	8 cut(s)	113, 214, 291, 341, 405, 433, 436, 439
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	387, 396
SatI	GCNGC	8 cut(s)	112, 213, 290, 340, 404, 432, 435, 438
Sau3AI	GATC	2 cut(s)	268, 454
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	196, 207
SetI	ASST	5 cut(s)	46, 146, 174, 204, 315
SfaNI	GCATC	6 cut(s)	90, 130, 142, 403, 425, 438
SmlI	CTYRAG	3 cut(s)	293, 328, 572
SmoI	CTYRAG	3 cut(s)	293, 328, 572
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	5 cut(s)	35, 227, 289, 319, 432
StyD4I	CCNGG	1 cut(s)	143
TaqI	TCGA	3 cut(s)	97, 218, 543
TasI	AATT	1 cut(s)	393
TauI	GCSGC	2 cut(s)	292, 434
Tru1I	TTAA	2 cut(s)	387, 396
Tru9I	TTAA	2 cut(s)	387, 396
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	6 cut(s)	111, 212, 339, 403, 434, 437
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	4 cut(s)	17, 75, 525, 572
VneI	GTGCAC	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.