isoform X1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G44970 AT2G44970 AT2G44970 |
| fragaria_vesca | FvH4_7g09500 FvH4_7g09500 FvH4_7g09500 |
| malus_domestica | MD07G1098600.v1.1 |
| prunus_persica | Prupe.2G122700_v2.0.a1 |
| pyrus_communis | pycom07g08130 |
| rosa_chinensis | RchiOBHm_Chr1g0346301 |
| rosa_laevigata | RLG00000028807 |
| rosa_multiflora | Rmu_sc0003363.1_g000040 Rmu_sc0003809.1_g000040 Rmu_sc0037053.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00308730 |
| rosa_rugosa | Rorug01G0178900 Rorug01G0179000 |
| rosa_samantha | Rh1AG198300 Rh1BG164400 Rh1CG183600 Rh1DG195100 |
| rosa_wichuraiana | Rw1G016670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 702 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 917 |
| AccII | CGCG | 1 cut(s) | 1161 |
| AciI | CCGC | 4 cut(s) | 378, 491, 1194, 1342 |
| AclWI | GGATC | 3 cut(s) | 512, 1323, 1336 |
| AcoI | YGGCCR | 2 cut(s) | 424, 1343 |
| AcsI | RAATTY | 5 cut(s) | 301, 382, 564, 717, 776 |
| AcuI | CTGAAG | 3 cut(s) | 717, 1091, 1140 |
| AcyI | GRCGYC | 1 cut(s) | 35 |
| AfaI | GTAC | 2 cut(s) | 102, 591 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 191, 917, 1405 |
| AgsI | TTSAA | 3 cut(s) | 294, 539, 874 |
| AjnI | CCWGG | 2 cut(s) | 628, 1367 |
| Alw26I | GTCTC | 1 cut(s) | 138 |
| AlwI | GGATC | 3 cut(s) | 512, 1323, 1336 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 845, 1264 |
| Ama87I | CYCGRG | 1 cut(s) | 750 |
| AoxI | GGCC | 5 cut(s) | 424, 699, 863, 1198, 1343 |
| ApeKI | GCWGC | 7 cut(s) | 119, 839, 842, 845, 1124, 1238, 1247 |
| ApoI | RAATTY | 5 cut(s) | 301, 382, 564, 717, 776 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1434 |
| AspS9I | GGNCC | 3 cut(s) | 650, 1360, 1477 |
| AsuC2I | CCSGG | 1 cut(s) | 1326 |
| AsuHPI | GGTGA | 3 cut(s) | 244, 974, 1031 |
| AsuII | TTCGAA | 1 cut(s) | 791 |
| AvaI | CYCGRG | 1 cut(s) | 750 |
| AvaII | GGWCC | 3 cut(s) | 650, 1360, 1477 |
| BaeGI | GKGCMC | 1 cut(s) | 1258 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 84, 117 |
| BalI | TGGCCA | 1 cut(s) | 426 |
| BamHI | GGATCC | 1 cut(s) | 1328 |
| BanII | GRGCYC | 1 cut(s) | 263 |
| BbsI | GAAGAC | 1 cut(s) | 282 |
| BbvI | GCAGC | 7 cut(s) | 106, 829, 832, 851, 1111, 1234, 1250 |
| BccI | CCATC | 6 cut(s) | 65, 350, 498, 604, 1286, 1366 |
| BceAI | ACGGC | 1 cut(s) | 22 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 200, 234 |
| BciT130I | CCWGG | 2 cut(s) | 630, 1369 |
| BclI | TGATCA | 1 cut(s) | 55 |
| BcnI | CCSGG | 1 cut(s) | 1326 |
| BcoDI | GTCTC | 1 cut(s) | 138 |
| BfaI | CTAG | 3 cut(s) | 255, 276, 399 |
| BfmI | CTRYAG | 5 cut(s) | 177, 312, 509, 933, 1265 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 432 |
| BisI | GCNGC | 8 cut(s) | 120, 840, 843, 846, 1125, 1239, 1248, 1343 |
| BlpI | GCTNAGC | 1 cut(s) | 1173 |
| BlsI | GCNGC | 8 cut(s) | 121, 841, 844, 847, 1126, 1240, 1249, 1344 |
| Bme1390I | CCNGG | 3 cut(s) | 630, 1326, 1369 |
| Bme18I | GGWCC | 3 cut(s) | 650, 1360, 1477 |
| BmeT110I | CYCGRG | 1 cut(s) | 750 |
| BmgT120I | GGNCC | 3 cut(s) | 650, 1360, 1477 |
| BmiI | GGNNCC | 3 cut(s) | 48, 627, 1330 |
| BmrFI | CCNGG | 3 cut(s) | 630, 1326, 1369 |
| BmsI | GCATC | 4 cut(s) | 328, 826, 1303, 1402 |
| BpiI | GAAGAC | 1 cut(s) | 282 |
| BpmI | CTGGAG | 2 cut(s) | 213, 267 |
| Bpu10I | CCTNAGC | 1 cut(s) | 222 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1173 |
| Bpu14I | TTCGAA | 1 cut(s) | 791 |
| BpuEI | CTTGAG | 1 cut(s) | 1404 |
| BpuMI | CCSGG | 1 cut(s) | 1326 |
| BsaBI | GATNNNNATC | 1 cut(s) | 998 |
| BsaHI | GRCGYC | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 2 cut(s) | 448, 646 |
| BsaWI | WCCGGW | 1 cut(s) | 1216 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 325, 355 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 191, 917, 1405 |
| Bse118I | RCCGGY | 1 cut(s) | 1204 |
| Bse1I | ACTGG | 1 cut(s) | 702 |
| Bse8I | GATNNNNATC | 1 cut(s) | 998 |
| BseBI | CCWGG | 2 cut(s) | 630, 1369 |
| BseDI | CCNNGG | 2 cut(s) | 448, 646 |
| BseGI | GGATG | 4 cut(s) | 499, 509, 1078, 1377 |
| BseJI | GATNNNNATC | 1 cut(s) | 998 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 191, 917, 1405 |
| BseMII | CTCAG | 3 cut(s) | 149, 236, 1164 |
| BseNI | ACTGG | 1 cut(s) | 702 |
| BseSI | GKGCMC | 1 cut(s) | 1258 |
| BseXI | GCAGC | 7 cut(s) | 106, 829, 832, 851, 1111, 1234, 1250 |
| BseYI | CCCAGC | 1 cut(s) | 1257 |
| BsgI | GTGCAG | 1 cut(s) | 1257 |
| Bsh1236I | CGCG | 1 cut(s) | 1161 |
| BshFI | GGCC | 5 cut(s) | 426, 701, 865, 1200, 1345 |
| BsiHKCI | CYCGRG | 1 cut(s) | 750 |
| BsiSI | CCGG | 3 cut(s) | 1205, 1217, 1325 |
| BslFI | GGGAC | 1 cut(s) | 966 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 191, 917, 1405 |
| BsmAI | GTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 1 cut(s) | 966 |
| BsnI | GGCC | 5 cut(s) | 426, 701, 865, 1200, 1345 |
| BsoBI | CYCGRG | 1 cut(s) | 750 |
| Bsp119I | TTCGAA | 1 cut(s) | 791 |
| Bsp1286I | GDGCHC | 2 cut(s) | 263, 1258 |
| Bsp143I | GATC | 6 cut(s) | 55, 460, 517, 999, 1269, 1328 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1173 |
| BspACI | CCGC | 4 cut(s) | 378, 491, 1194, 1342 |
| BspANI | GGCC | 5 cut(s) | 426, 701, 865, 1200, 1345 |
| BspCNI | CTCAG | 3 cut(s) | 148, 235, 1165 |
| BspFNI | CGCG | 1 cut(s) | 1161 |
| BspLI | GGNNCC | 3 cut(s) | 48, 627, 1330 |
| BspMAI | CTGCAG | 2 cut(s) | 316, 1269 |
| BspPI | GGATC | 3 cut(s) | 512, 1323, 1336 |
| BspQI | GCTCTTC | 1 cut(s) | 1440 |
| BspT104I | TTCGAA | 1 cut(s) | 791 |
| BsrFI | RCCGGY | 1 cut(s) | 1204 |
| BsrI | ACTGG | 1 cut(s) | 702 |
| BssAI | RCCGGY | 1 cut(s) | 1204 |
| BssECI | CCNNGG | 2 cut(s) | 448, 646 |
| BssMI | GATC | 6 cut(s) | 55, 460, 517, 999, 1269, 1328 |
| BssNI | GRCGYC | 1 cut(s) | 35 |
| BssT1I | CCWWGG | 1 cut(s) | 448 |
| Bst2UI | CCWGG | 2 cut(s) | 630, 1369 |
| Bst4CI | ACNGT | 1 cut(s) | 478 |
| Bst6I | CTCTTC | 4 cut(s) | 534, 1054, 1280, 1440 |
| BstACI | GRCGYC | 1 cut(s) | 35 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 338, 845 |
| BstBI | TTCGAA | 1 cut(s) | 791 |
| BstC8I | GCNNGC | 2 cut(s) | 1029, 1198 |
| BstDEI | CTNAG | 3 cut(s) | 135, 222, 1173 |
| BstDSI | CCRYGG | 1 cut(s) | 646 |
| BstEII | GGTNACC | 1 cut(s) | 232 |
| BstF5I | GGATG | 4 cut(s) | 499, 509, 1078, 1377 |
| BstFNI | CGCG | 1 cut(s) | 1161 |
| BstKTI | GATC | 6 cut(s) | 58, 463, 520, 1002, 1272, 1331 |
| BstMAI | GTCTC | 1 cut(s) | 138 |
| BstMBI | GATC | 6 cut(s) | 55, 460, 517, 999, 1269, 1328 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 338, 432, 845, 1145, 1244, 1247, 1253 |
| BstNI | CCWGG | 2 cut(s) | 630, 1369 |
| BstNSI | RCATGY | 3 cut(s) | 221, 1172, 1308 |
| BstPI | GGTNACC | 1 cut(s) | 232 |
| BstSCI | CCNGG | 3 cut(s) | 628, 1324, 1367 |
| BstSFI | CTRYAG | 5 cut(s) | 177, 312, 509, 933, 1265 |
| BstSLI | GKGCMC | 1 cut(s) | 1258 |
| BstUI | CGCG | 1 cut(s) | 1161 |
| BstV1I | GCAGC | 7 cut(s) | 106, 829, 832, 851, 1111, 1234, 1250 |
| BstV2I | GAAGAC | 1 cut(s) | 282 |
| BstX2I | RGATCY | 1 cut(s) | 1328 |
| BstYI | RGATCY | 1 cut(s) | 1328 |
| BsuRI | GGCC | 5 cut(s) | 426, 701, 865, 1200, 1345 |
| BtgI | CCRYGG | 1 cut(s) | 646 |
| BtsCI | GGATG | 4 cut(s) | 499, 509, 1078, 1377 |
| BtsIMutI | CAGTG | 3 cut(s) | 118, 165, 1116 |
| Cac8I | GCNNGC | 2 cut(s) | 1029, 1198 |
| CaiI | CAGNNNCTG | 2 cut(s) | 845, 1264 |
| Cfr10I | RCCGGY | 1 cut(s) | 1204 |
| Cfr13I | GGNCC | 3 cut(s) | 650, 1360, 1477 |
| CseI | GACGC | 2 cut(s) | 43, 276 |
| Csp6I | GTAC | 2 cut(s) | 101, 590 |
| CviAII | CATG | 8 cut(s) | 218, 266, 559, 584, 1169, 1305, 1364, 1481 |
| CviQI | GTAC | 2 cut(s) | 101, 590 |
| DdeI | CTNAG | 3 cut(s) | 135, 222, 1173 |
| DpnI | GATC | 6 cut(s) | 57, 462, 519, 1001, 1271, 1330 |
| DpnII | GATC | 6 cut(s) | 55, 460, 517, 999, 1269, 1328 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 702 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 702 |
| EaeI | YGGCCR | 2 cut(s) | 424, 1343 |
| Eam1104I | CTCTTC | 4 cut(s) | 534, 1054, 1280, 1440 |
| EarI | CTCTTC | 4 cut(s) | 534, 1054, 1280, 1440 |
| Eco130I | CCWWGG | 1 cut(s) | 448 |
| Eco24I | GRGCYC | 1 cut(s) | 263 |
| Eco32I | GATATC | 2 cut(s) | 577, 940 |
| Eco47I | GGWCC | 3 cut(s) | 650, 1360, 1477 |
| Eco57I | CTGAAG | 3 cut(s) | 717, 1091, 1140 |
| Eco88I | CYCGRG | 1 cut(s) | 750 |
| Eco91I | GGTNACC | 1 cut(s) | 232 |
| EcoO65I | GGTNACC | 1 cut(s) | 232 |
| EcoRI | GAATTC | 1 cut(s) | 776 |
| EcoRII | CCWGG | 2 cut(s) | 628, 1367 |
| EcoRV | GATATC | 2 cut(s) | 577, 940 |
| EcoT14I | CCWWGG | 1 cut(s) | 448 |
| EcoT38I | GRGCYC | 1 cut(s) | 263 |
| ErhI | CCWWGG | 1 cut(s) | 448 |
| FaeI | CATG | 8 cut(s) | 221, 269, 562, 587, 1172, 1308, 1367, 1484 |
| FaqI | GGGAC | 1 cut(s) | 966 |
| FatI | CATG | 8 cut(s) | 217, 265, 558, 583, 1168, 1304, 1363, 1480 |
| FauI | CCCGC | 2 cut(s) | 385, 1201 |
| FauNDI | CATATG | 1 cut(s) | 913 |
| FbaI | TGATCA | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 8 cut(s) | 120, 840, 843, 846, 1125, 1239, 1248, 1343 |
| FokI | GGATG | 4 cut(s) | 506, 516, 1065, 1384 |
| FriOI | GRGCYC | 1 cut(s) | 263 |
| Fsp4HI | GCNGC | 8 cut(s) | 120, 840, 843, 846, 1125, 1239, 1248, 1343 |
| FspBI | CTAG | 3 cut(s) | 255, 276, 399 |
| GluI | GCNGC | 8 cut(s) | 120, 840, 843, 846, 1125, 1239, 1248, 1343 |
| GsaI | CCCAGC | 1 cut(s) | 1261 |
| GsuI | CTGGAG | 2 cut(s) | 213, 267 |
| HaeIII | GGCC | 5 cut(s) | 426, 701, 865, 1200, 1345 |
| HapII | CCGG | 3 cut(s) | 1205, 1217, 1325 |
| HgaI | GACGC | 2 cut(s) | 43, 276 |
| Hin1I | GRCGYC | 1 cut(s) | 35 |
| Hin1II | CATG | 8 cut(s) | 221, 269, 562, 587, 1172, 1308, 1367, 1484 |
| HinfI | GANTC | 5 cut(s) | 206, 317, 413, 994, 1296 |
| HpaII | CCGG | 3 cut(s) | 1205, 1217, 1325 |
| HphI | GGTGA | 3 cut(s) | 244, 974, 1031 |
| Hpy166II | GTNNAC | 2 cut(s) | 592, 973 |
| Hpy188I | TCNGA | 8 cut(s) | 51, 138, 211, 999, 1071, 1274, 1405, 1440 |
| Hpy188III | TCNNGA | 5 cut(s) | 192, 224, 246, 752, 1034 |
| Hpy8I | GTNNAC | 2 cut(s) | 592, 973 |
| Hpy99I | CGWCG | 1 cut(s) | 37 |
| HpyAV | CCTTC | 2 cut(s) | 195, 1410 |
| HpyCH4III | ACNGT | 1 cut(s) | 478 |
| HpyCH4IV | ACGT | 1 cut(s) | 1351 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 338, 432, 845, 1145, 1244, 1247, 1253 |
| HpyF3I | CTNAG | 3 cut(s) | 135, 222, 1173 |
| HpySE526I | ACGT | 1 cut(s) | 1351 |
| Hsp92I | GRCGYC | 1 cut(s) | 35 |
| Hsp92II | CATG | 8 cut(s) | 221, 269, 562, 587, 1172, 1308, 1367, 1484 |
| Ksp22I | TGATCA | 1 cut(s) | 55 |
| Kzo9I | GATC | 6 cut(s) | 55, 460, 517, 999, 1269, 1328 |
| LguI | GCTCTTC | 1 cut(s) | 1440 |
| LmnI | GCTCC | 3 cut(s) | 52, 346, 1195 |
| Lsp1109I | GCAGC | 7 cut(s) | 106, 829, 832, 851, 1111, 1234, 1250 |
| LweI | GCATC | 4 cut(s) | 328, 826, 1303, 1402 |
| MaeI | CTAG | 3 cut(s) | 255, 276, 399 |
| MaeII | ACGT | 1 cut(s) | 1351 |
| MaeIII | GTNAC | 3 cut(s) | 232, 962, 1300 |
| MalI | GATC | 6 cut(s) | 57, 462, 519, 1001, 1271, 1330 |
| MboI | GATC | 6 cut(s) | 55, 460, 517, 999, 1269, 1328 |
| MfeI | CAATTG | 1 cut(s) | 927 |
| MflI | RGATCY | 1 cut(s) | 1328 |
| MhlI | GDGCHC | 2 cut(s) | 263, 1258 |
| MlsI | TGGCCA | 1 cut(s) | 426 |
| MluNI | TGGCCA | 1 cut(s) | 426 |
| MlyI | GAGTC | 2 cut(s) | 326, 1290 |
| Mox20I | TGGCCA | 1 cut(s) | 426 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1434 |
| MscI | TGGCCA | 1 cut(s) | 426 |
| MseI | TTAA | 3 cut(s) | 62, 1014, 1043 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1337 |
| Msp20I | TGGCCA | 1 cut(s) | 426 |
| MspA1I | CMGCKG | 1 cut(s) | 842 |
| MspI | CCGG | 3 cut(s) | 1205, 1217, 1325 |
| MspR9I | CCNGG | 3 cut(s) | 630, 1326, 1369 |
| MunI | CAATTG | 1 cut(s) | 927 |
| MvaI | CCWGG | 2 cut(s) | 630, 1369 |
| MvnI | CGCG | 1 cut(s) | 1161 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 338, 432, 845, 1145, 1244, 1247, 1253 |
| NciI | CCSGG | 1 cut(s) | 1326 |
| NdeI | CATATG | 1 cut(s) | 913 |
| NdeII | GATC | 6 cut(s) | 55, 460, 517, 999, 1269, 1328 |
| NlaIII | CATG | 8 cut(s) | 221, 269, 562, 587, 1172, 1308, 1367, 1484 |
| NlaIV | GGNNCC | 3 cut(s) | 48, 627, 1330 |
| NmeAIII | GCCGAG | 1 cut(s) | 1483 |
| NmuCI | GTSAC | 3 cut(s) | 232, 962, 1300 |
| NspI | RCATGY | 3 cut(s) | 221, 1172, 1308 |
| NspV | TTCGAA | 1 cut(s) | 791 |
| PaeR7I | CTCGAG | 1 cut(s) | 750 |
| PciSI | GCTCTTC | 1 cut(s) | 1440 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1434 |
| PfeI | GAWTC | 3 cut(s) | 206, 413, 994 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 917 |
| PfoI | TCCNGGA | 1 cut(s) | 1324 |
| PkrI | GCNGC | 8 cut(s) | 121, 841, 844, 847, 1126, 1240, 1249, 1344 |
| PleI | GAGTC | 2 cut(s) | 325, 1290 |
| PpsI | GAGTC | 2 cut(s) | 325, 1290 |
| Psp6I | CCWGG | 2 cut(s) | 628, 1367 |
| PspEI | GGTNACC | 1 cut(s) | 232 |
| PspFI | CCCAGC | 1 cut(s) | 1257 |
| PspGI | CCWGG | 2 cut(s) | 628, 1367 |
| PspN4I | GGNNCC | 3 cut(s) | 48, 627, 1330 |
| PspPI | GGNCC | 3 cut(s) | 650, 1360, 1477 |
| PstI | CTGCAG | 2 cut(s) | 316, 1269 |
| PstNI | CAGNNNCTG | 2 cut(s) | 845, 1264 |
| PsuI | RGATCY | 1 cut(s) | 1328 |
| PvuII | CAGCTG | 1 cut(s) | 842 |
| RsaI | GTAC | 2 cut(s) | 102, 591 |
| RsaNI | GTAC | 2 cut(s) | 101, 590 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1337 |
| SapI | GCTCTTC | 1 cut(s) | 1440 |
| SaqAI | TTAA | 3 cut(s) | 62, 1014, 1043 |
| SatI | GCNGC | 8 cut(s) | 120, 840, 843, 846, 1125, 1239, 1248, 1343 |
| Sau3AI | GATC | 6 cut(s) | 55, 460, 517, 999, 1269, 1328 |
| Sau96I | GGNCC | 3 cut(s) | 650, 1360, 1477 |
| SchI | GAGTC | 2 cut(s) | 326, 1290 |
| ScrFI | CCNGG | 3 cut(s) | 630, 1326, 1369 |
| SduI | GDGCHC | 2 cut(s) | 263, 1258 |
| SfaNI | GCATC | 4 cut(s) | 328, 826, 1303, 1402 |
| SfcI | CTRYAG | 5 cut(s) | 177, 312, 509, 933, 1265 |
| Sfr274I | CTCGAG | 1 cut(s) | 750 |
| SfuI | TTCGAA | 1 cut(s) | 791 |
| SinI | GGWCC | 3 cut(s) | 650, 1360, 1477 |
| SlaI | CTCGAG | 1 cut(s) | 750 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1337 |
| SmlI | CTYRAG | 2 cut(s) | 750, 1419 |
| SmoI | CTYRAG | 2 cut(s) | 750, 1419 |
| SsiI | CCGC | 4 cut(s) | 378, 491, 1194, 1342 |
| SspMI | CTAG | 3 cut(s) | 255, 276, 399 |
| StyD4I | CCNGG | 3 cut(s) | 628, 1324, 1367 |
| StyI | CCWWGG | 1 cut(s) | 448 |
| TaaI | ACNGT | 1 cut(s) | 478 |
| TaiI | ACGT | 1 cut(s) | 1354 |
| TaqI | TCGA | 3 cut(s) | 608, 751, 791 |
| TauI | GCSGC | 1 cut(s) | 1345 |
| TfiI | GAWTC | 3 cut(s) | 206, 413, 994 |
| Tru1I | TTAA | 3 cut(s) | 62, 1014, 1043 |
| Tru9I | TTAA | 3 cut(s) | 62, 1014, 1043 |
| TscAI | CASTG | 3 cut(s) | 118, 172, 1123 |
| TseFI | GTSAC | 3 cut(s) | 232, 962, 1300 |
| TseI | GCWGC | 7 cut(s) | 119, 839, 842, 845, 1124, 1238, 1247 |
| Tsp45I | GTSAC | 3 cut(s) | 232, 962, 1300 |
| TspDTI | ATGAA | 9 cut(s) | 135, 231, 294, 375, 547, 710, 1098, 1371, 1497 |
| TspGWI | ACGGA | 3 cut(s) | 663, 994, 1071 |
| TspRI | CASTG | 3 cut(s) | 118, 172, 1123 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 917 |
| VpaK11BI | GGWCC | 3 cut(s) | 650, 1360, 1477 |
| XapI | RAATTY | 5 cut(s) | 301, 382, 564, 717, 776 |
| XceI | RCATGY | 3 cut(s) | 221, 1172, 1308 |
| XhoI | CTCGAG | 1 cut(s) | 750 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1434 |
| XspI | CTAG | 3 cut(s) | 255, 276, 399 |