RLG00000028807

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
28344441 .. 28349184
4744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028807

Sequence Viewer

Length: 1500 bp
ATGCAAGATAGAACCTCCACGCCCACCGAAACGACGCCGTTGGTGGCTCCGATTGATCATTTAAGAAGTGATGGGCTAATCCCTCAACTATTTACCTCTGTACCAGCTTTCAGTGAAGCTGCCTCTTATCTGTCTCAGACAACTTCATTATTTACCCAATGTTTCACTGATAATTCTGTAGAACCTTCTTCTGGAGATTTTGGGGATTCCGATTTACATGCTCAGGAATTGGTGACCTTTTCATCTGGAGAAACTAGGGGCTCTCATGCTAAATCTAGTGATAATGCGTCTTCAAGTGGAAATTCATTATCTGCAGAGTCATCTCATACTGCAACCGATGCTCCCTCTACACTTGATGGAACAATGGAAAACTCTCCCGCAAATTCATCTCAAACTTCTAGTGCCATTATAGAATCTAATCGTGGCCAAAGTGGCATTTCTATCTTCCAAGGTCTTATTGATCGGGTGCGAAGAACTGTTCGTGGGTCTGCGGATGATATAGGATGGCTACAGCGTGATCCTACTATGCCCTCTGTTGAAGAGGGAACTGAAAGGTTCATGGAAATTCTGGGGGATATCAGGCATGGCGTACACAGATTGCCAAACTCGATGGTTTGTTTGTTGGTTCCAGGTCTTTTCAGCAACCACGGACCACTATATTTTGTAAATACAAAAATGAGTTTGTCAAAGATTGGACTGGCCTGTCATATAGCCAAAATTCATAGTGAGGCTTCAGTTGAGAAAAACGCTCGAGAGATAAAAGAATACATTGAGGAATTCTATTGGGGTTCGAAAAAGCGTGTGTTAGTTCTTGGACATAGCAAAGGGGGAATAGATGCAGCTGCTGCTATGTCATTGTATTGGCCTGATTTGAAAGATAAGGTTGCTGGATTGGTGTTAGCACAAAGTCCATATGGTGGTAGCCCAATTGCTACAGATATCTTGCGAGAGGGACAGCTTGGTGACTATGTAAACTTACGGAAGCTAATGGAGATTCTGATCTGCAAAGTAATTAAGGGTGATTTGCAAGCTCTGGAAGATTTAACTTATGACAGAAGAAGAGAGTTTCTGAAGAAACATCCGTTGCCAAAGGAACTCCCTGTTGTTTCATTTCACACTGAAGCTGCCATTTCTCCTGCTGTGTTAGCTACATTATCTCGCGTAGCACATGCTGAGCTACCTATGGTTGCTCCCGCAGGCCAACCGGCAAAACTTCCGGTAGTGATACCTCTTGGTGCAGCTATGGCTGCCTGTGCCCAGCTTCTGCAGATCAGATATGGCAAGAAGAGTGATGGACTCGTCACATGCTGTGATGCAGAAGTTCCGGGATCCATTGTTGTGCGGCCAAAACGTAAATTGGACCATGCCTGGATGGTTTATTCATCAATGCAAGATGACCCTTCGGAGGCAGATGCTTCTCAAGTGTGTGAAGCTCTTCTGATGTTGCTTGTAGAAGCCGAGCAGAACAAGAGAAAGGACCATGAAAGGAAAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

54.16

Weight (kDa)

5.64

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 702
AccB7I CCANNNNNTGG 1 cut(s) 917
AccII CGCG 1 cut(s) 1161
AciI CCGC 4 cut(s) 378, 491, 1194, 1342
AclWI GGATC 3 cut(s) 512, 1323, 1336
AcoI YGGCCR 2 cut(s) 424, 1343
AcsI RAATTY 5 cut(s) 301, 382, 564, 717, 776
AcuI CTGAAG 3 cut(s) 717, 1091, 1140
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 2 cut(s) 102, 591
AfiI CCNNNNNNNGG 3 cut(s) 191, 917, 1405
AgsI TTSAA 3 cut(s) 294, 539, 874
AjnI CCWGG 2 cut(s) 628, 1367
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 512, 1323, 1336
AlwNI CAGNNNCTG 2 cut(s) 845, 1264
Ama87I CYCGRG 1 cut(s) 750
AoxI GGCC 5 cut(s) 424, 699, 863, 1198, 1343
ApeKI GCWGC 7 cut(s) 119, 839, 842, 845, 1124, 1238, 1247
ApoI RAATTY 5 cut(s) 301, 382, 564, 717, 776
Asp700I GAANNNNTTC 1 cut(s) 1434
AspS9I GGNCC 3 cut(s) 650, 1360, 1477
AsuC2I CCSGG 1 cut(s) 1326
AsuHPI GGTGA 3 cut(s) 244, 974, 1031
AsuII TTCGAA 1 cut(s) 791
AvaI CYCGRG 1 cut(s) 750
AvaII GGWCC 3 cut(s) 650, 1360, 1477
BaeGI GKGCMC 1 cut(s) 1258
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BalI TGGCCA 1 cut(s) 426
BamHI GGATCC 1 cut(s) 1328
BanII GRGCYC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 7 cut(s) 106, 829, 832, 851, 1111, 1234, 1250
BccI CCATC 6 cut(s) 65, 350, 498, 604, 1286, 1366
BceAI ACGGC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 2 cut(s) 630, 1369
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 1326
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 3 cut(s) 255, 276, 399
BfmI CTRYAG 5 cut(s) 177, 312, 509, 933, 1265
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 8 cut(s) 120, 840, 843, 846, 1125, 1239, 1248, 1343
BlpI GCTNAGC 1 cut(s) 1173
BlsI GCNGC 8 cut(s) 121, 841, 844, 847, 1126, 1240, 1249, 1344
Bme1390I CCNGG 3 cut(s) 630, 1326, 1369
Bme18I GGWCC 3 cut(s) 650, 1360, 1477
BmeT110I CYCGRG 1 cut(s) 750
BmgT120I GGNCC 3 cut(s) 650, 1360, 1477
BmiI GGNNCC 3 cut(s) 48, 627, 1330
BmrFI CCNGG 3 cut(s) 630, 1326, 1369
BmsI GCATC 4 cut(s) 328, 826, 1303, 1402
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 213, 267
Bpu10I CCTNAGC 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 1173
Bpu14I TTCGAA 1 cut(s) 791
BpuEI CTTGAG 1 cut(s) 1404
BpuMI CCSGG 1 cut(s) 1326
BsaBI GATNNNNATC 1 cut(s) 998
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 448, 646
BsaWI WCCGGW 1 cut(s) 1216
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 917, 1405
Bse118I RCCGGY 1 cut(s) 1204
Bse1I ACTGG 1 cut(s) 702
Bse8I GATNNNNATC 1 cut(s) 998
BseBI CCWGG 2 cut(s) 630, 1369
BseDI CCNNGG 2 cut(s) 448, 646
BseGI GGATG 4 cut(s) 499, 509, 1078, 1377
BseJI GATNNNNATC 1 cut(s) 998
BseLI CCNNNNNNNGG 3 cut(s) 191, 917, 1405
BseMII CTCAG 3 cut(s) 149, 236, 1164
BseNI ACTGG 1 cut(s) 702
BseSI GKGCMC 1 cut(s) 1258
BseXI GCAGC 7 cut(s) 106, 829, 832, 851, 1111, 1234, 1250
BseYI CCCAGC 1 cut(s) 1257
BsgI GTGCAG 1 cut(s) 1257
Bsh1236I CGCG 1 cut(s) 1161
BshFI GGCC 5 cut(s) 426, 701, 865, 1200, 1345
BsiHKCI CYCGRG 1 cut(s) 750
BsiSI CCGG 3 cut(s) 1205, 1217, 1325
BslFI GGGAC 1 cut(s) 966
BslI CCNNNNNNNGG 3 cut(s) 191, 917, 1405
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 966
BsnI GGCC 5 cut(s) 426, 701, 865, 1200, 1345
BsoBI CYCGRG 1 cut(s) 750
Bsp119I TTCGAA 1 cut(s) 791
Bsp1286I GDGCHC 2 cut(s) 263, 1258
Bsp143I GATC 6 cut(s) 55, 460, 517, 999, 1269, 1328
Bsp1720I GCTNAGC 1 cut(s) 1173
BspACI CCGC 4 cut(s) 378, 491, 1194, 1342
BspANI GGCC 5 cut(s) 426, 701, 865, 1200, 1345
BspCNI CTCAG 3 cut(s) 148, 235, 1165
BspFNI CGCG 1 cut(s) 1161
BspLI GGNNCC 3 cut(s) 48, 627, 1330
BspMAI CTGCAG 2 cut(s) 316, 1269
BspPI GGATC 3 cut(s) 512, 1323, 1336
BspQI GCTCTTC 1 cut(s) 1440
BspT104I TTCGAA 1 cut(s) 791
BsrFI RCCGGY 1 cut(s) 1204
BsrI ACTGG 1 cut(s) 702
BssAI RCCGGY 1 cut(s) 1204
BssECI CCNNGG 2 cut(s) 448, 646
BssMI GATC 6 cut(s) 55, 460, 517, 999, 1269, 1328
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 2 cut(s) 630, 1369
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 4 cut(s) 534, 1054, 1280, 1440
BstACI GRCGYC 1 cut(s) 35
BstAPI GCANNNNNTGC 2 cut(s) 338, 845
BstBI TTCGAA 1 cut(s) 791
BstC8I GCNNGC 2 cut(s) 1029, 1198
BstDEI CTNAG 3 cut(s) 135, 222, 1173
BstDSI CCRYGG 1 cut(s) 646
BstEII GGTNACC 1 cut(s) 232
BstF5I GGATG 4 cut(s) 499, 509, 1078, 1377
BstFNI CGCG 1 cut(s) 1161
BstKTI GATC 6 cut(s) 58, 463, 520, 1002, 1272, 1331
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 6 cut(s) 55, 460, 517, 999, 1269, 1328
BstMWI GCNNNNNNNGC 7 cut(s) 338, 432, 845, 1145, 1244, 1247, 1253
BstNI CCWGG 2 cut(s) 630, 1369
BstNSI RCATGY 3 cut(s) 221, 1172, 1308
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 628, 1324, 1367
BstSFI CTRYAG 5 cut(s) 177, 312, 509, 933, 1265
BstSLI GKGCMC 1 cut(s) 1258
BstUI CGCG 1 cut(s) 1161
BstV1I GCAGC 7 cut(s) 106, 829, 832, 851, 1111, 1234, 1250
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 1328
BstYI RGATCY 1 cut(s) 1328
BsuRI GGCC 5 cut(s) 426, 701, 865, 1200, 1345
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 4 cut(s) 499, 509, 1078, 1377
BtsIMutI CAGTG 3 cut(s) 118, 165, 1116
Cac8I GCNNGC 2 cut(s) 1029, 1198
CaiI CAGNNNCTG 2 cut(s) 845, 1264
Cfr10I RCCGGY 1 cut(s) 1204
Cfr13I GGNCC 3 cut(s) 650, 1360, 1477
CseI GACGC 2 cut(s) 43, 276
Csp6I GTAC 2 cut(s) 101, 590
CviAII CATG 8 cut(s) 218, 266, 559, 584, 1169, 1305, 1364, 1481
CviQI GTAC 2 cut(s) 101, 590
DdeI CTNAG 3 cut(s) 135, 222, 1173
DpnI GATC 6 cut(s) 57, 462, 519, 1001, 1271, 1330
DpnII GATC 6 cut(s) 55, 460, 517, 999, 1269, 1328
DrdI GACNNNNNNGTC 1 cut(s) 702
DseDI GACNNNNNNGTC 1 cut(s) 702
EaeI YGGCCR 2 cut(s) 424, 1343
Eam1104I CTCTTC 4 cut(s) 534, 1054, 1280, 1440
EarI CTCTTC 4 cut(s) 534, 1054, 1280, 1440
Eco130I CCWWGG 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 263
Eco32I GATATC 2 cut(s) 577, 940
Eco47I GGWCC 3 cut(s) 650, 1360, 1477
Eco57I CTGAAG 3 cut(s) 717, 1091, 1140
Eco88I CYCGRG 1 cut(s) 750
Eco91I GGTNACC 1 cut(s) 232
EcoO65I GGTNACC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 776
EcoRII CCWGG 2 cut(s) 628, 1367
EcoRV GATATC 2 cut(s) 577, 940
EcoT14I CCWWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 8 cut(s) 221, 269, 562, 587, 1172, 1308, 1367, 1484
FaqI GGGAC 1 cut(s) 966
FatI CATG 8 cut(s) 217, 265, 558, 583, 1168, 1304, 1363, 1480
FauI CCCGC 2 cut(s) 385, 1201
FauNDI CATATG 1 cut(s) 913
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 8 cut(s) 120, 840, 843, 846, 1125, 1239, 1248, 1343
FokI GGATG 4 cut(s) 506, 516, 1065, 1384
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 8 cut(s) 120, 840, 843, 846, 1125, 1239, 1248, 1343
FspBI CTAG 3 cut(s) 255, 276, 399
GluI GCNGC 8 cut(s) 120, 840, 843, 846, 1125, 1239, 1248, 1343
GsaI CCCAGC 1 cut(s) 1261
GsuI CTGGAG 2 cut(s) 213, 267
HaeIII GGCC 5 cut(s) 426, 701, 865, 1200, 1345
HapII CCGG 3 cut(s) 1205, 1217, 1325
HgaI GACGC 2 cut(s) 43, 276
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 8 cut(s) 221, 269, 562, 587, 1172, 1308, 1367, 1484
HinfI GANTC 5 cut(s) 206, 317, 413, 994, 1296
HpaII CCGG 3 cut(s) 1205, 1217, 1325
HphI GGTGA 3 cut(s) 244, 974, 1031
Hpy166II GTNNAC 2 cut(s) 592, 973
Hpy188I TCNGA 8 cut(s) 51, 138, 211, 999, 1071, 1274, 1405, 1440
Hpy188III TCNNGA 5 cut(s) 192, 224, 246, 752, 1034
Hpy8I GTNNAC 2 cut(s) 592, 973
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 195, 1410
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 1351
HpyF10VI GCNNNNNNNGC 7 cut(s) 338, 432, 845, 1145, 1244, 1247, 1253
HpyF3I CTNAG 3 cut(s) 135, 222, 1173
HpySE526I ACGT 1 cut(s) 1351
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 8 cut(s) 221, 269, 562, 587, 1172, 1308, 1367, 1484
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 6 cut(s) 55, 460, 517, 999, 1269, 1328
LguI GCTCTTC 1 cut(s) 1440
LmnI GCTCC 3 cut(s) 52, 346, 1195
Lsp1109I GCAGC 7 cut(s) 106, 829, 832, 851, 1111, 1234, 1250
LweI GCATC 4 cut(s) 328, 826, 1303, 1402
MaeI CTAG 3 cut(s) 255, 276, 399
MaeII ACGT 1 cut(s) 1351
MaeIII GTNAC 3 cut(s) 232, 962, 1300
MalI GATC 6 cut(s) 57, 462, 519, 1001, 1271, 1330
MboI GATC 6 cut(s) 55, 460, 517, 999, 1269, 1328
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 1 cut(s) 1328
MhlI GDGCHC 2 cut(s) 263, 1258
MlsI TGGCCA 1 cut(s) 426
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 2 cut(s) 326, 1290
Mox20I TGGCCA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 1434
MscI TGGCCA 1 cut(s) 426
MseI TTAA 3 cut(s) 62, 1014, 1043
MslI CAYNNNNRTG 1 cut(s) 1337
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 842
MspI CCGG 3 cut(s) 1205, 1217, 1325
MspR9I CCNGG 3 cut(s) 630, 1326, 1369
MunI CAATTG 1 cut(s) 927
MvaI CCWGG 2 cut(s) 630, 1369
MvnI CGCG 1 cut(s) 1161
MwoI GCNNNNNNNGC 7 cut(s) 338, 432, 845, 1145, 1244, 1247, 1253
NciI CCSGG 1 cut(s) 1326
NdeI CATATG 1 cut(s) 913
NdeII GATC 6 cut(s) 55, 460, 517, 999, 1269, 1328
NlaIII CATG 8 cut(s) 221, 269, 562, 587, 1172, 1308, 1367, 1484
NlaIV GGNNCC 3 cut(s) 48, 627, 1330
NmeAIII GCCGAG 1 cut(s) 1483
NmuCI GTSAC 3 cut(s) 232, 962, 1300
NspI RCATGY 3 cut(s) 221, 1172, 1308
NspV TTCGAA 1 cut(s) 791
PaeR7I CTCGAG 1 cut(s) 750
PciSI GCTCTTC 1 cut(s) 1440
PdmI GAANNNNTTC 1 cut(s) 1434
PfeI GAWTC 3 cut(s) 206, 413, 994
PflMI CCANNNNNTGG 1 cut(s) 917
PfoI TCCNGGA 1 cut(s) 1324
PkrI GCNGC 8 cut(s) 121, 841, 844, 847, 1126, 1240, 1249, 1344
PleI GAGTC 2 cut(s) 325, 1290
PpsI GAGTC 2 cut(s) 325, 1290
Psp6I CCWGG 2 cut(s) 628, 1367
PspEI GGTNACC 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 1257
PspGI CCWGG 2 cut(s) 628, 1367
PspN4I GGNNCC 3 cut(s) 48, 627, 1330
PspPI GGNCC 3 cut(s) 650, 1360, 1477
PstI CTGCAG 2 cut(s) 316, 1269
PstNI CAGNNNCTG 2 cut(s) 845, 1264
PsuI RGATCY 1 cut(s) 1328
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 2 cut(s) 102, 591
RsaNI GTAC 2 cut(s) 101, 590
RseI CAYNNNNRTG 1 cut(s) 1337
SapI GCTCTTC 1 cut(s) 1440
SaqAI TTAA 3 cut(s) 62, 1014, 1043
SatI GCNGC 8 cut(s) 120, 840, 843, 846, 1125, 1239, 1248, 1343
Sau3AI GATC 6 cut(s) 55, 460, 517, 999, 1269, 1328
Sau96I GGNCC 3 cut(s) 650, 1360, 1477
SchI GAGTC 2 cut(s) 326, 1290
ScrFI CCNGG 3 cut(s) 630, 1326, 1369
SduI GDGCHC 2 cut(s) 263, 1258
SfaNI GCATC 4 cut(s) 328, 826, 1303, 1402
SfcI CTRYAG 5 cut(s) 177, 312, 509, 933, 1265
Sfr274I CTCGAG 1 cut(s) 750
SfuI TTCGAA 1 cut(s) 791
SinI GGWCC 3 cut(s) 650, 1360, 1477
SlaI CTCGAG 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 1337
SmlI CTYRAG 2 cut(s) 750, 1419
SmoI CTYRAG 2 cut(s) 750, 1419
SsiI CCGC 4 cut(s) 378, 491, 1194, 1342
SspMI CTAG 3 cut(s) 255, 276, 399
StyD4I CCNGG 3 cut(s) 628, 1324, 1367
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 1354
TaqI TCGA 3 cut(s) 608, 751, 791
TauI GCSGC 1 cut(s) 1345
TfiI GAWTC 3 cut(s) 206, 413, 994
Tru1I TTAA 3 cut(s) 62, 1014, 1043
Tru9I TTAA 3 cut(s) 62, 1014, 1043
TscAI CASTG 3 cut(s) 118, 172, 1123
TseFI GTSAC 3 cut(s) 232, 962, 1300
TseI GCWGC 7 cut(s) 119, 839, 842, 845, 1124, 1238, 1247
Tsp45I GTSAC 3 cut(s) 232, 962, 1300
TspDTI ATGAA 9 cut(s) 135, 231, 294, 375, 547, 710, 1098, 1371, 1497
TspGWI ACGGA 3 cut(s) 663, 994, 1071
TspRI CASTG 3 cut(s) 118, 172, 1123
Van91I CCANNNNNTGG 1 cut(s) 917
VpaK11BI GGWCC 3 cut(s) 650, 1360, 1477
XapI RAATTY 5 cut(s) 301, 382, 564, 717, 776
XceI RCATGY 3 cut(s) 221, 1172, 1308
XhoI CTCGAG 1 cut(s) 750
XmnI GAANNNNTTC 1 cut(s) 1434
XspI CTAG 3 cut(s) 255, 276, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.