Rorug01G0179000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009076
Physical Location & Seq
Reverse (-)
24579399 .. 24579875
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0179000.1

Sequence Viewer

Length: 477 bp
ATGGCGTTTCCAACGAGGACATCAGGGAGCCTCCGCCATGTGATTCTGCTGTTCCTCCTGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTCGCCGCCCTCCTCTTCGTCGAGTTCTGCTGTGGCGCCCGATCGCGCAAGTGCGACTGCCATGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGAATGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGGGAGTGACACCAATCCCAATTACGAGTGTCTCCGGTCCGAGCTCAGGAAGATGGCTCCGCCGTCTTGCTTTTTCGAGCACGGTGTGGGTGCCCCGTCGCCAAGCTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGTGACTTTTCCAATTTTACCCTCAAATGCAATTGCTTTTGTTTCTGGAATTTGTTTGTTTGTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCAT

Protein Analysis

158

Amino Acids

17.66

Weight (kDa)

7.96

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 128, 350
AccII CGCG 1 cut(s) 139
AciI CCGC 5 cut(s) 34, 99, 261, 320, 393
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 2 cut(s) 185, 454
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 346
AfiI CCNNNNNNNGG 3 cut(s) 257, 306, 388
AgsI TTSAA 2 cut(s) 172, 370
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 3 cut(s) 199, 304, 366
AluI AGCT 3 cut(s) 199, 304, 366
Alw21I GWGCWC 2 cut(s) 306, 342
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 55
AoxI GGCC 2 cut(s) 177, 390
ApeKI GCWGC 3 cut(s) 159, 196, 199
ApoI RAATTY 2 cut(s) 185, 454
AspLEI GCGC 2 cut(s) 131, 141
AspS9I GGNCC 2 cut(s) 297, 379
AsuC2I CCSGG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 297, 379
BaeGI GKGCMC 1 cut(s) 355
BanI GGYRCC 2 cut(s) 128, 350
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 2 cut(s) 306, 342
BbvI GCAGC 3 cut(s) 146, 186, 208
BccI CCATC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 253
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 5 cut(s) 99, 160, 197, 200, 393
BlsI GCNGC 5 cut(s) 100, 161, 198, 201, 394
Bme1390I CCNGG 2 cut(s) 226, 253
Bme18I GGWCC 2 cut(s) 297, 379
BmgT120I GGNCC 2 cut(s) 297, 379
BmiI GGNNCC 6 cut(s) 29, 130, 318, 352, 380, 381
BmrFI CCNGG 2 cut(s) 226, 253
Bpu10I CCTNAGC 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 4 cut(s) 73, 154, 180, 251
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 306, 388
Bse118I RCCGGY 1 cut(s) 395
BseBI CCWGG 1 cut(s) 253
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 73, 154, 180, 251
BseLI CCNNNNNNNGG 3 cut(s) 257, 306, 388
BseMII CTCAG 1 cut(s) 319
BseRI GAGGAG 3 cut(s) 62, 95, 224
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 3 cut(s) 146, 186, 208
BseYI CCCAGC 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 179, 392
BshNI GGYRCC 2 cut(s) 128, 350
BshVI ATCGAT 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 2 cut(s) 306, 342
BsiSI CCGG 3 cut(s) 225, 295, 396
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 257, 306, 388
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 179, 392
Bsp1286I GDGCHC 3 cut(s) 306, 342, 355
Bsp143I GATC 3 cut(s) 60, 134, 237
Bsp19I CCATGG 2 cut(s) 154, 180
BspACI CCGC 5 cut(s) 34, 99, 261, 320, 393
BspANI GGCC 2 cut(s) 179, 392
BspCNI CTCAG 1 cut(s) 318
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 6 cut(s) 29, 130, 318, 352, 380, 381
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 2 cut(s) 128, 350
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 4 cut(s) 73, 154, 180, 251
BssMI GATC 3 cut(s) 60, 134, 237
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 154, 180
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 2 cut(s) 89, 113
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 231, 305
BstDSI CCRYGG 2 cut(s) 154, 180
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 2 cut(s) 131, 141
BstKTI GATC 3 cut(s) 63, 137, 240
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 60, 134, 237
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 159, 165
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 224, 251
BstSFI CTRYAG 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 355
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 146, 186, 208
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 2 cut(s) 179, 392
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 2 cut(s) 154, 180
Cac8I GCNNGC 1 cut(s) 397
CfoI GCGC 2 cut(s) 131, 141
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 297, 379
ClaI ATCGAT 1 cut(s) 240
CpoI CGGWCCG 1 cut(s) 297
CspI CGGWCCG 1 cut(s) 297
CviAII CATG 3 cut(s) 38, 155, 181
DdeI CTNAG 2 cut(s) 231, 305
DinI GGCGCC 1 cut(s) 130
DpnI GATC 3 cut(s) 62, 136, 239
DpnII GATC 3 cut(s) 60, 134, 237
DraIII CACNNNGTG 1 cut(s) 346
Eam1104I CTCTTC 2 cut(s) 89, 113
EarI CTCTTC 2 cut(s) 89, 113
EciI GGCGGA 2 cut(s) 23, 309
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 2 cut(s) 154, 180
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 297, 379
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 154, 180
EcoT38I GRGCYC 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 154, 180
FaeI CATG 3 cut(s) 41, 158, 184
FaiI YATR 4 cut(s) 39, 156, 182, 401
FaqI GGGAC 1 cut(s) 365
FatI CATG 3 cut(s) 37, 154, 180
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 5 cut(s) 99, 160, 197, 200, 393
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 5 cut(s) 99, 160, 197, 200, 393
GlaI GCGC 2 cut(s) 130, 140
GluI GCNGC 5 cut(s) 99, 160, 197, 200, 393
GsaI CCCAGC 1 cut(s) 378
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 2 cut(s) 179, 392
HapII CCGG 3 cut(s) 225, 295, 396
HhaI GCGC 2 cut(s) 131, 141
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 41, 158, 184
Hin6I GCGC 2 cut(s) 129, 139
HinP1I GCGC 2 cut(s) 129, 139
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 1 cut(s) 43
HpaII CCGG 3 cut(s) 225, 295, 396
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 4 cut(s) 58, 220, 307, 451
Hpy99I CGWCG 3 cut(s) 98, 116, 361
HpyAV CCTTC 3 cut(s) 169, 250, 364
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 4 cut(s) 162, 196, 202, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 165
HpyF3I CTNAG 2 cut(s) 231, 305
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 41, 158, 184
HspAI GCGC 2 cut(s) 129, 139
KasI GGCGCC 1 cut(s) 128
KflI GGGWCCC 1 cut(s) 379
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Kzo9I GATC 3 cut(s) 60, 134, 237
LmnI GCTCC 2 cut(s) 27, 322
Lsp1109I GCAGC 3 cut(s) 146, 186, 208
MaeIII GTNAC 2 cut(s) 266, 407
MalI GATC 3 cut(s) 62, 136, 239
MboI GATC 3 cut(s) 60, 134, 237
MboII GAAGA 6 cut(s) 76, 79, 82, 100, 184, 322
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 3 cut(s) 306, 342, 355
MluCI AATT 5 cut(s) 185, 280, 418, 436, 454
Mly113I GGCGCC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 3 cut(s) 225, 295, 396
MspR9I CCNGG 2 cut(s) 226, 253
MunI CAATTG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 159, 165
NaeI GCCGGC 1 cut(s) 397
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 1 cut(s) 226
NcoI CCATGG 2 cut(s) 154, 180
NdeII GATC 3 cut(s) 60, 134, 237
NgoMIV GCCGGC 1 cut(s) 395
NlaIII CATG 3 cut(s) 41, 158, 184
NlaIV GGNNCC 6 cut(s) 29, 130, 318, 352, 380, 381
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 266, 407
PdiI GCCGGC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 226
PkrI GCNGC 5 cut(s) 100, 161, 198, 201, 394
Ple19I CGATCG 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 132
PpuMI RGGWCCY 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 6 cut(s) 29, 130, 318, 352, 380, 381
PspPI GGNCC 2 cut(s) 297, 379
PspPPI RGGWCCY 1 cut(s) 379
PstI CTGCAG 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 226
PvuI CGATCG 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 199
Rsr2I CGGWCCG 1 cut(s) 297
RsrII CGGWCCG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 306
SatI GCNGC 5 cut(s) 99, 160, 197, 200, 393
Sau3AI GATC 3 cut(s) 60, 134, 237
Sau96I GGNCC 2 cut(s) 297, 379
ScrFI CCNGG 2 cut(s) 226, 253
SduI GDGCHC 3 cut(s) 306, 342, 355
SetI ASST 4 cut(s) 72, 201, 306, 368
SfcI CTRYAG 1 cut(s) 200
SfoI GGCGCC 1 cut(s) 130
SinI GGWCC 2 cut(s) 297, 379
Sse9I AATT 5 cut(s) 185, 280, 418, 436, 454
SsiI CCGC 5 cut(s) 34, 99, 261, 320, 393
SspDI GGCGCC 1 cut(s) 128
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 224, 251
StyI CCWWGG 2 cut(s) 154, 180
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 4 cut(s) 114, 189, 240, 336
TasI AATT 5 cut(s) 185, 280, 418, 436, 454
TauI GCSGC 2 cut(s) 101, 395
TfiI GAWTC 1 cut(s) 43
TseFI GTSAC 2 cut(s) 266, 407
TseI GCWGC 3 cut(s) 159, 196, 199
Tsp45I GTSAC 2 cut(s) 266, 407
Tth111I GACNNNGTC 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 297, 379
XapI RAATTY 2 cut(s) 185, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.