Rh1AG198300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009076
Physical Location & Seq
Forward (+)
37701440 .. 37706706
5267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG198300.1

Sequence Viewer

Length: 1137 bp
ATGGAAAACTCTCCCGCAAATTCATCTCAAACTTCTAGTGCCATTATAGAATCTAATCATGGCCAAAGTGGCATTTCTATCTTCCAAGGTCTTATTGATCGGGTGCGAAGAACTGTTCGTGGGTCTGCGGATGATATAGGATGGCTACAGCGTGATCCTACTATGCCCTCTGTTGAAGAGGGAACTGAAAGGTTCATGGAAATTCTGGGGGATATCAGGCATGGTGTTCACAGATTGCCAAACTCGATGATTTGTTTGTTGGTTCCAGGTCTTTTCAGCAACCATGGACCACTATATTTTGTGAATACAAAAATGAGTTTGTCAAAGATTGGACTGGCCTGTCATATAGCCAAAATTCATAGTGAGGCTTCAGTTGAGAAAAACGCTCGAGAGATAAAAGAATACATTGAGGAATTCTATTGGGGTTCGAAAAAGCGTGTGTTAGTTCTTGGACATAGCAAAGGGGGAATAGATGCAGCTGCTGCTATGTCGTTGTATTGGCCTGATTTGAAAGATAAGGTTGCTGGATTGGTGTTAGCACAAAGTCCATATGGTGGTAGCCCAATTGCTACAGATATCTTGCGAGAGGGACAGCTTGGTGATTATGTAAACTTACGGAAGCTAATGGAGATTCTGATCTGCAAAGTAATTAAGGGTGATTTGCAAGCTCTGGAAGATTTAACTTATGACAGAAGAAGAGAGTTTCTGAAGAAACATCCGTTGCCAAAGGAACTCCCTGTTGTTTCATTTCACACTGAAGCTGCCATTTCTCCTGCTGTGTTAGCTACATTATCTCGTGTAGCACATGCTGAGCTACCTATGGTTGCTCCTGCAGGCCAACCGGCAAAACTTCCAGTAGTGATACCTCTTGGTGCAGCTATGGCTGCCTGTGCCCAGCTTCTGCAGGTCAGATATGGCAAGAAGAGTGATGGACTCGTCACATGCTGTGATGCAGAAGTTCCGGGATCCATTGTTGTGCGGCCAAAACGTAAATTGGACCATGCCTGGATGGTTTATTCATCAATGCAAGATGACCCTTCGGAGGCAGATGCTTCTCAAGTGTGTGAAGCTCTTCTGATGTTGCTTGTAGAAGCCGAGCAGAACAAGAGAAAGGACCATGAAAGGAAAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCAT

Protein Analysis

378

Amino Acids

41.55

Weight (kDa)

6.65

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 895
AccB7I CCANNNNNTGG 1 cut(s) 554
AciI CCGC 3 cut(s) 15, 128, 979
AclWI GGATC 3 cut(s) 149, 960, 973
AcoI YGGCCR 2 cut(s) 61, 980
AcsI RAATTY 4 cut(s) 19, 201, 354, 413
AcuI CTGAAG 3 cut(s) 354, 728, 777
AfiI CCNNNNNNNGG 2 cut(s) 554, 1042
AgsI TTSAA 2 cut(s) 176, 511
AjnI CCWGG 2 cut(s) 265, 1004
AlwI GGATC 3 cut(s) 149, 960, 973
AlwNI CAGNNNCTG 2 cut(s) 482, 901
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 5 cut(s) 61, 336, 500, 835, 980
ApeKI GCWGC 6 cut(s) 476, 479, 482, 761, 875, 884
ApoI RAATTY 4 cut(s) 19, 201, 354, 413
Asp700I GAANNNNTTC 1 cut(s) 1071
AspS9I GGNCC 3 cut(s) 287, 997, 1114
AsuC2I CCSGG 1 cut(s) 963
AsuHPI GGTGA 2 cut(s) 611, 668
AsuII TTCGAA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 3 cut(s) 287, 997, 1114
BaeGI GKGCMC 1 cut(s) 895
BalI TGGCCA 1 cut(s) 63
BamHI GGATCC 1 cut(s) 965
BauI CACGAG 1 cut(s) 795
BbvI GCAGC 6 cut(s) 466, 469, 488, 748, 871, 887
BccI CCATC 3 cut(s) 135, 923, 1003
BciT130I CCWGG 2 cut(s) 267, 1006
BcnI CCSGG 1 cut(s) 963
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 4 cut(s) 146, 570, 831, 902
BfuAI ACCTGC 1 cut(s) 895
BglI GCCNNNNNGGC 1 cut(s) 69
BisI GCNGC 7 cut(s) 477, 480, 483, 762, 876, 885, 980
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 7 cut(s) 478, 481, 484, 763, 877, 886, 981
Bme1390I CCNGG 3 cut(s) 267, 963, 1006
Bme18I GGWCC 3 cut(s) 287, 997, 1114
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 3 cut(s) 287, 997, 1114
BmiI GGNNCC 2 cut(s) 264, 967
BmrFI CCNGG 3 cut(s) 267, 963, 1006
BmsI GCATC 3 cut(s) 463, 940, 1039
Bpu1102I GCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 1041
BpuMI CCSGG 1 cut(s) 963
BsaBI GATNNNNATC 1 cut(s) 635
BsaJI CCNNGG 2 cut(s) 85, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 554, 1042
Bse118I RCCGGY 1 cut(s) 841
Bse1I ACTGG 2 cut(s) 339, 854
Bse8I GATNNNNATC 1 cut(s) 635
BseBI CCWGG 2 cut(s) 267, 1006
BseDI CCNNGG 2 cut(s) 85, 283
BseGI GGATG 4 cut(s) 136, 146, 715, 1014
BseJI GATNNNNATC 1 cut(s) 635
BseLI CCNNNNNNNGG 2 cut(s) 554, 1042
BseMII CTCAG 1 cut(s) 801
BseNI ACTGG 2 cut(s) 339, 854
BseSI GKGCMC 1 cut(s) 895
BseXI GCAGC 6 cut(s) 466, 469, 488, 748, 871, 887
BseYI CCCAGC 1 cut(s) 894
BsgI GTGCAG 1 cut(s) 894
BshFI GGCC 5 cut(s) 63, 338, 502, 837, 982
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 2 cut(s) 842, 962
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 554, 1042
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 5 cut(s) 63, 338, 502, 837, 982
BsoBI CYCGRG 1 cut(s) 387
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 895
Bsp143I GATC 4 cut(s) 97, 154, 636, 965
Bsp1720I GCTNAGC 1 cut(s) 810
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 3 cut(s) 15, 128, 979
BspANI GGCC 5 cut(s) 63, 338, 502, 837, 982
BspCNI CTCAG 1 cut(s) 802
BspLI GGNNCC 2 cut(s) 264, 967
BspMAI CTGCAG 2 cut(s) 835, 906
BspMI ACCTGC 1 cut(s) 895
BspPI GGATC 3 cut(s) 149, 960, 973
BspQI GCTCTTC 1 cut(s) 1077
BspT104I TTCGAA 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 841
BsrI ACTGG 2 cut(s) 339, 854
BssAI RCCGGY 1 cut(s) 841
BssECI CCNNGG 2 cut(s) 85, 283
BssMI GATC 4 cut(s) 97, 154, 636, 965
BssSI CACGAG 1 cut(s) 795
BssT1I CCWWGG 2 cut(s) 85, 283
Bst2BI CACGAG 1 cut(s) 795
Bst2UI CCWGG 2 cut(s) 267, 1006
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 4 cut(s) 171, 691, 917, 1077
BstAPI GCANNNNNTGC 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 666, 835
BstDEI CTNAG 1 cut(s) 810
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 4 cut(s) 136, 146, 715, 1014
BstKTI GATC 4 cut(s) 100, 157, 639, 968
BstMBI GATC 4 cut(s) 97, 154, 636, 965
BstMWI GCNNNNNNNGC 6 cut(s) 69, 482, 782, 881, 884, 890
BstNI CCWGG 2 cut(s) 267, 1006
BstNSI RCATGY 2 cut(s) 809, 945
BstSCI CCNGG 3 cut(s) 265, 961, 1004
BstSFI CTRYAG 4 cut(s) 146, 570, 831, 902
BstSLI GKGCMC 1 cut(s) 895
BstV1I GCAGC 6 cut(s) 466, 469, 488, 748, 871, 887
BstX2I RGATCY 1 cut(s) 965
BstYI RGATCY 1 cut(s) 965
BsuRI GGCC 5 cut(s) 63, 338, 502, 837, 982
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 4 cut(s) 136, 146, 715, 1014
BtsIMutI CAGTG 1 cut(s) 753
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 2 cut(s) 666, 835
CaiI CAGNNNCTG 2 cut(s) 482, 901
Cfr10I RCCGGY 1 cut(s) 841
Cfr13I GGNCC 3 cut(s) 287, 997, 1114
CviAII CATG 8 cut(s) 59, 196, 221, 284, 806, 942, 1001, 1118
DdeI CTNAG 1 cut(s) 810
DpnI GATC 4 cut(s) 99, 156, 638, 967
DpnII GATC 4 cut(s) 97, 154, 636, 965
DrdI GACNNNNNNGTC 1 cut(s) 339
DseDI GACNNNNNNGTC 1 cut(s) 339
EaeI YGGCCR 2 cut(s) 61, 980
Eam1104I CTCTTC 4 cut(s) 171, 691, 917, 1077
EarI CTCTTC 4 cut(s) 171, 691, 917, 1077
Eco130I CCWWGG 2 cut(s) 85, 283
Eco32I GATATC 2 cut(s) 214, 577
Eco47I GGWCC 3 cut(s) 287, 997, 1114
Eco57I CTGAAG 3 cut(s) 354, 728, 777
Eco88I CYCGRG 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 265, 1004
EcoRV GATATC 2 cut(s) 214, 577
EcoT14I CCWWGG 2 cut(s) 85, 283
ErhI CCWWGG 2 cut(s) 85, 283
FaeI CATG 8 cut(s) 62, 199, 224, 287, 809, 945, 1004, 1121
FaqI GGGAC 1 cut(s) 603
FatI CATG 8 cut(s) 58, 195, 220, 283, 805, 941, 1000, 1117
FauI CCCGC 1 cut(s) 22
FauNDI CATATG 1 cut(s) 550
Fnu4HI GCNGC 7 cut(s) 477, 480, 483, 762, 876, 885, 980
FokI GGATG 4 cut(s) 143, 153, 702, 1021
Fsp4HI GCNGC 7 cut(s) 477, 480, 483, 762, 876, 885, 980
FspBI CTAG 1 cut(s) 36
GluI GCNGC 7 cut(s) 477, 480, 483, 762, 876, 885, 980
GsaI CCCAGC 1 cut(s) 898
HaeIII GGCC 5 cut(s) 63, 338, 502, 837, 982
HapII CCGG 2 cut(s) 842, 962
Hin1II CATG 8 cut(s) 62, 199, 224, 287, 809, 945, 1004, 1121
HinfI GANTC 3 cut(s) 50, 631, 933
HpaII CCGG 2 cut(s) 842, 962
HphI GGTGA 2 cut(s) 611, 668
Hpy166II GTNNAC 2 cut(s) 229, 610
Hpy188I TCNGA 5 cut(s) 636, 708, 911, 1042, 1077
Hpy188III TCNNGA 2 cut(s) 389, 671
Hpy8I GTNNAC 2 cut(s) 229, 610
HpyAV CCTTC 1 cut(s) 1047
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 988
HpyCH4V TGCA 8 cut(s) 476, 642, 664, 833, 875, 904, 953, 1027
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 482, 782, 881, 884, 890
HpyF3I CTNAG 1 cut(s) 810
HpySE526I ACGT 1 cut(s) 988
Hsp92II CATG 8 cut(s) 62, 199, 224, 287, 809, 945, 1004, 1121
Kzo9I GATC 4 cut(s) 97, 154, 636, 965
LguI GCTCTTC 1 cut(s) 1077
LmnI GCTCC 1 cut(s) 832
Lsp1109I GCAGC 6 cut(s) 466, 469, 488, 748, 871, 887
LweI GCATC 3 cut(s) 463, 940, 1039
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 988
MaeIII GTNAC 1 cut(s) 937
MalI GATC 4 cut(s) 99, 156, 638, 967
MboI GATC 4 cut(s) 97, 154, 636, 965
MboII GAAGA 9 cut(s) 73, 120, 188, 686, 705, 708, 721, 934, 1064
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 965
MhlI GDGCHC 1 cut(s) 895
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 7 cut(s) 19, 201, 354, 413, 564, 648, 992
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 1 cut(s) 927
MnlI CCTC 7 cut(s) 172, 178, 358, 403, 580, 876, 1036
Mox20I TGGCCA 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 1071
MscI TGGCCA 1 cut(s) 63
MseI TTAA 2 cut(s) 651, 680
MslI CAYNNNNRTG 1 cut(s) 974
Msp20I TGGCCA 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 842, 962
MspR9I CCNGG 3 cut(s) 267, 963, 1006
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 2 cut(s) 267, 1006
MwoI GCNNNNNNNGC 6 cut(s) 69, 482, 782, 881, 884, 890
NciI CCSGG 1 cut(s) 963
NcoI CCATGG 1 cut(s) 283
NdeI CATATG 1 cut(s) 550
NdeII GATC 4 cut(s) 97, 154, 636, 965
NlaIII CATG 8 cut(s) 62, 199, 224, 287, 809, 945, 1004, 1121
NlaIV GGNNCC 2 cut(s) 264, 967
NmeAIII GCCGAG 1 cut(s) 1120
NmuCI GTSAC 1 cut(s) 937
NspI RCATGY 2 cut(s) 809, 945
NspV TTCGAA 1 cut(s) 428
PaeR7I CTCGAG 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 1071
PfeI GAWTC 2 cut(s) 50, 631
PflMI CCANNNNNTGG 1 cut(s) 554
PfoI TCCNGGA 1 cut(s) 961
PkrI GCNGC 7 cut(s) 478, 481, 484, 763, 877, 886, 981
PleI GAGTC 1 cut(s) 927
PpsI GAGTC 1 cut(s) 927
Psp6I CCWGG 2 cut(s) 265, 1004
PspFI CCCAGC 1 cut(s) 894
PspGI CCWGG 2 cut(s) 265, 1004
PspN4I GGNNCC 2 cut(s) 264, 967
PspPI GGNCC 3 cut(s) 287, 997, 1114
PstI CTGCAG 2 cut(s) 835, 906
PstNI CAGNNNCTG 2 cut(s) 482, 901
PsuI RGATCY 1 cut(s) 965
PvuII CAGCTG 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 974
SapI GCTCTTC 1 cut(s) 1077
SaqAI TTAA 2 cut(s) 651, 680
SatI GCNGC 7 cut(s) 477, 480, 483, 762, 876, 885, 980
Sau3AI GATC 4 cut(s) 97, 154, 636, 965
Sau96I GGNCC 3 cut(s) 287, 997, 1114
SbfI CCTGCAGG 1 cut(s) 835
SchI GAGTC 1 cut(s) 927
ScrFI CCNGG 3 cut(s) 267, 963, 1006
SdaI CCTGCAGG 1 cut(s) 835
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 3 cut(s) 463, 940, 1039
SfcI CTRYAG 4 cut(s) 146, 570, 831, 902
Sfr274I CTCGAG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 428
SinI GGWCC 3 cut(s) 287, 997, 1114
SlaI CTCGAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 2 cut(s) 387, 1056
SmoI CTYRAG 2 cut(s) 387, 1056
Sse8387I CCTGCAGG 1 cut(s) 835
Sse9I AATT 7 cut(s) 19, 201, 354, 413, 564, 648, 992
SsiI CCGC 3 cut(s) 15, 128, 979
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 265, 961, 1004
StyI CCWWGG 2 cut(s) 85, 283
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 991
TaqI TCGA 3 cut(s) 245, 388, 428
TasI AATT 7 cut(s) 19, 201, 354, 413, 564, 648, 992
TauI GCSGC 1 cut(s) 982
TfiI GAWTC 2 cut(s) 50, 631
Tru1I TTAA 2 cut(s) 651, 680
Tru9I TTAA 2 cut(s) 651, 680
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 1 cut(s) 937
TseI GCWGC 6 cut(s) 476, 479, 482, 761, 875, 884
Tsp45I GTSAC 1 cut(s) 937
TspDTI ATGAA 6 cut(s) 12, 184, 347, 735, 1008, 1134
TspGWI ACGGA 2 cut(s) 631, 708
TspRI CASTG 1 cut(s) 760
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 3 cut(s) 287, 997, 1114
XapI RAATTY 4 cut(s) 19, 201, 354, 413
XceI RCATGY 2 cut(s) 809, 945
XhoI CTCGAG 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 1071
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.