Rh1BG164400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009076
Physical Location & Seq
Forward (+)
26403747 .. 26409028
5282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG164400.1

Sequence Viewer

Length: 1494 bp
ATGATGCAAGATAGAACCTCCGCGCCCACCGAAACGACGCCGTTGAATGATCATTTAAGAAGTGATGGGCTAATCCCTCAACTATTTACCTCTGTACCAGCTTTCAGTGAAGCTGCCTCTTATCTGTCTCAGACAACTTCATTATTTACCCAATGTTTCACTGATAATTCTGTAGAACCTTCTTCTGGAGATTTTGGGGATTCCGATTTACATGCTCAGGAATTGGTGACCTTTTCATCTGGAGAAACTAGGGGCTCTCATGCTAAATCTAGTGATAATGCGTCTTCAAGTGGAAATTCATTATCTGCAGAGTCATCTCATACTGCAACCGATGCTCCCTCTACACTTGATGGAACAATGGAAAACTCTCCCGCAAATTCATCTCAAACTTCTAGTGCCATTATAGAATCTAATCATGGCCAAAGTGGCATTTCTATCTTCCAAGGTCTTATTGATCGGGTGCGAAGAACTGTTCGTGGGTCTGCGGATGATATAGGATGGCTACAGCGTGATCCTACTATGCCCTCTGTTGAAGAGGGAACTGAAAGGTTCATGGAAATTCTGGGGGATATCAGGCATGGTGTTCACAGATTGCCAAACTCGATGGTTTGCTTGTTGGTTCCAGGTCTGTTCAGCAACCATGGACCACTATATTTTGTAAATACAAAAATGAGTTTGTCAAAGATTGGACTGGCCTGTCATATAGCCAAAATTCATAGTGAGGCTTCAGTTGAGAAAAACGCTCGAGAGATAAAAGAATACATTGAGGAATTCTATTGGGGTTCGAAAAAGCGTGTGTTAGTTCTTGGACATAGCAAAGGGGGAATAGATGCAGCTGCTGCTATGTCGTTGTATTGGCCTGATTTGAAAGATAAGGTTGCTGGATTGGTGTTAGCACAAAGTCCATATGGTGGTAGCCCAATTGCTACAGATATCTTGCGAGAGGGACAGCTTGGTGATTATGTAAACTTACGGAAGCTAATGGAGATTCTGATCTGCAAAGTAATTAAGGGTGATTTGCAAGCTCTGGAAGATTTAACTTATGACAGAAGAAGAGAGTTTCTGAAGAAACACCCGTTGCCAAAGGAACTCCCTGTTGTTTCATTTCACACTGAAGCTGCCATTTCTCCTGCTGTGTTAGCTACATTATCTCGCGTAGCACATGCTGAGCTACCTATGGTTGCTCCCGCAGGCCAACCGGCAAAACTTCCAGTAGTGATACCTCTTGGTGCAGCTATGGCTGCCTGTGCCCAGCTTCTGCAGGTCAGATATGGCAAGAAGAGTGATGGACTCGTCACATGCTGTGATGCAGAAGTTCCGGGATCCATTGTTGTGCGGCCAAAACGTAAATTGGACCATGCCTGGATGGTTTATTCATCAATGCAAGATGACCCTTCGGAGGCAGATGCTTCTCAAGTGTGTGAAGCTCTTCTGATGTTGCTTGTAGAAGCCGAGCAGAACAAGAGAAAGGACCATGAAAGGAAAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCAT

Protein Analysis

497

Amino Acids

53.96

Weight (kDa)

5.62

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 696
Acc36I ACCTGC 1 cut(s) 1252
AccB7I CCANNNNNTGG 1 cut(s) 911
AccII CGCG 2 cut(s) 23, 1155
AciI CCGC 5 cut(s) 21, 372, 485, 1188, 1336
AclWI GGATC 3 cut(s) 506, 1317, 1330
AcoI YGGCCR 2 cut(s) 418, 1337
AcsI RAATTY 5 cut(s) 295, 376, 558, 711, 770
AcuI CTGAAG 3 cut(s) 711, 1085, 1134
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 3 cut(s) 185, 911, 1399
AgsI TTSAA 4 cut(s) 46, 288, 533, 868
AjnI CCWGG 2 cut(s) 622, 1361
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 3 cut(s) 506, 1317, 1330
AlwNI CAGNNNCTG 2 cut(s) 839, 1258
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 5 cut(s) 418, 693, 857, 1192, 1337
ApeKI GCWGC 7 cut(s) 113, 833, 836, 839, 1118, 1232, 1241
ApoI RAATTY 5 cut(s) 295, 376, 558, 711, 770
Asp700I GAANNNNTTC 1 cut(s) 1428
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 3 cut(s) 644, 1354, 1471
AsuC2I CCSGG 1 cut(s) 1320
AsuHPI GGTGA 3 cut(s) 238, 968, 1025
AsuII TTCGAA 1 cut(s) 785
AvaI CYCGRG 1 cut(s) 744
AvaII GGWCC 3 cut(s) 644, 1354, 1471
BaeGI GKGCMC 1 cut(s) 1252
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BalI TGGCCA 1 cut(s) 420
BamHI GGATCC 1 cut(s) 1322
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 7 cut(s) 100, 823, 826, 845, 1105, 1228, 1244
BccI CCATC 6 cut(s) 59, 344, 492, 598, 1280, 1360
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 2 cut(s) 624, 1363
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 1 cut(s) 1320
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 3 cut(s) 249, 270, 393
BfmI CTRYAG 5 cut(s) 171, 306, 503, 927, 1259
BfuAI ACCTGC 1 cut(s) 1252
BglI GCCNNNNNGGC 1 cut(s) 426
BisI GCNGC 8 cut(s) 114, 834, 837, 840, 1119, 1233, 1242, 1337
BlpI GCTNAGC 1 cut(s) 1167
BlsI GCNGC 8 cut(s) 115, 835, 838, 841, 1120, 1234, 1243, 1338
Bme1390I CCNGG 3 cut(s) 624, 1320, 1363
Bme18I GGWCC 3 cut(s) 644, 1354, 1471
BmeT110I CYCGRG 1 cut(s) 744
BmgT120I GGNCC 3 cut(s) 644, 1354, 1471
BmiI GGNNCC 2 cut(s) 621, 1324
BmrFI CCNGG 3 cut(s) 624, 1320, 1363
BmsI GCATC 4 cut(s) 322, 820, 1297, 1396
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 2 cut(s) 207, 261
Bpu10I CCTNAGC 1 cut(s) 216
Bpu1102I GCTNAGC 1 cut(s) 1167
Bpu14I TTCGAA 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 1398
BpuMI CCSGG 1 cut(s) 1320
BsaBI GATNNNNATC 1 cut(s) 992
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 442, 640
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 911, 1399
Bse118I RCCGGY 1 cut(s) 1198
Bse1I ACTGG 2 cut(s) 696, 1211
Bse8I GATNNNNATC 1 cut(s) 992
BseBI CCWGG 2 cut(s) 624, 1363
BseDI CCNNGG 2 cut(s) 442, 640
BseGI GGATG 3 cut(s) 493, 503, 1371
BseJI GATNNNNATC 1 cut(s) 992
BseLI CCNNNNNNNGG 3 cut(s) 185, 911, 1399
BseMII CTCAG 3 cut(s) 143, 230, 1158
BseNI ACTGG 2 cut(s) 696, 1211
BseSI GKGCMC 1 cut(s) 1252
BseXI GCAGC 7 cut(s) 100, 823, 826, 845, 1105, 1228, 1244
BseYI CCCAGC 1 cut(s) 1251
BsgI GTGCAG 1 cut(s) 1251
Bsh1236I CGCG 2 cut(s) 23, 1155
BshFI GGCC 5 cut(s) 420, 695, 859, 1194, 1339
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 2 cut(s) 1199, 1319
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 3 cut(s) 185, 911, 1399
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 5 cut(s) 420, 695, 859, 1194, 1339
BsoBI CYCGRG 1 cut(s) 744
Bsp119I TTCGAA 1 cut(s) 785
Bsp1286I GDGCHC 2 cut(s) 257, 1252
Bsp143I GATC 5 cut(s) 49, 454, 511, 993, 1322
Bsp1720I GCTNAGC 1 cut(s) 1167
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 5 cut(s) 21, 372, 485, 1188, 1336
BspANI GGCC 5 cut(s) 420, 695, 859, 1194, 1339
BspCNI CTCAG 3 cut(s) 142, 229, 1159
BspFNI CGCG 2 cut(s) 23, 1155
BspLI GGNNCC 2 cut(s) 621, 1324
BspMAI CTGCAG 2 cut(s) 310, 1263
BspMI ACCTGC 1 cut(s) 1252
BspPI GGATC 3 cut(s) 506, 1317, 1330
BspQI GCTCTTC 1 cut(s) 1434
BspT104I TTCGAA 1 cut(s) 785
BsrFI RCCGGY 1 cut(s) 1198
BsrI ACTGG 2 cut(s) 696, 1211
BssAI RCCGGY 1 cut(s) 1198
BssECI CCNNGG 2 cut(s) 442, 640
BssMI GATC 5 cut(s) 49, 454, 511, 993, 1322
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 2 cut(s) 442, 640
Bst2UI CCWGG 2 cut(s) 624, 1363
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 4 cut(s) 528, 1048, 1274, 1434
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 2 cut(s) 332, 839
BstBI TTCGAA 1 cut(s) 785
BstC8I GCNNGC 2 cut(s) 1023, 1192
BstDEI CTNAG 3 cut(s) 129, 216, 1167
BstDSI CCRYGG 1 cut(s) 640
BstEII GGTNACC 1 cut(s) 226
BstF5I GGATG 3 cut(s) 493, 503, 1371
BstFNI CGCG 2 cut(s) 23, 1155
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 5 cut(s) 52, 457, 514, 996, 1325
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 5 cut(s) 49, 454, 511, 993, 1322
BstMWI GCNNNNNNNGC 7 cut(s) 332, 426, 839, 1139, 1238, 1241, 1247
BstNI CCWGG 2 cut(s) 624, 1363
BstNSI RCATGY 3 cut(s) 215, 1166, 1302
BstPI GGTNACC 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 622, 1318, 1361
BstSFI CTRYAG 5 cut(s) 171, 306, 503, 927, 1259
BstSLI GKGCMC 1 cut(s) 1252
BstUI CGCG 2 cut(s) 23, 1155
BstV1I GCAGC 7 cut(s) 100, 823, 826, 845, 1105, 1228, 1244
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 1322
BstYI RGATCY 1 cut(s) 1322
BsuRI GGCC 5 cut(s) 420, 695, 859, 1194, 1339
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 3 cut(s) 493, 503, 1371
BtsIMutI CAGTG 3 cut(s) 112, 159, 1110
BveI ACCTGC 1 cut(s) 1252
Cac8I GCNNGC 2 cut(s) 1023, 1192
CaiI CAGNNNCTG 2 cut(s) 839, 1258
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 1198
Cfr13I GGNCC 3 cut(s) 644, 1354, 1471
CseI GACGC 2 cut(s) 46, 270
Csp6I GTAC 1 cut(s) 95
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 3 cut(s) 129, 216, 1167
DpnI GATC 5 cut(s) 51, 456, 513, 995, 1324
DpnII GATC 5 cut(s) 49, 454, 511, 993, 1322
DrdI GACNNNNNNGTC 1 cut(s) 696
DseDI GACNNNNNNGTC 1 cut(s) 696
EaeI YGGCCR 2 cut(s) 418, 1337
Eam1104I CTCTTC 4 cut(s) 528, 1048, 1274, 1434
EarI CTCTTC 4 cut(s) 528, 1048, 1274, 1434
Eco130I CCWWGG 2 cut(s) 442, 640
Eco24I GRGCYC 1 cut(s) 257
Eco32I GATATC 2 cut(s) 571, 934
Eco47I GGWCC 3 cut(s) 644, 1354, 1471
Eco57I CTGAAG 3 cut(s) 711, 1085, 1134
Eco88I CYCGRG 1 cut(s) 744
Eco91I GGTNACC 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 770
EcoRII CCWGG 2 cut(s) 622, 1361
EcoRV GATATC 2 cut(s) 571, 934
EcoT14I CCWWGG 2 cut(s) 442, 640
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 2 cut(s) 442, 640
FaqI GGGAC 1 cut(s) 960
FauI CCCGC 2 cut(s) 379, 1195
FauNDI CATATG 1 cut(s) 907
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 8 cut(s) 114, 834, 837, 840, 1119, 1233, 1242, 1337
FokI GGATG 3 cut(s) 500, 510, 1378
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 8 cut(s) 114, 834, 837, 840, 1119, 1233, 1242, 1337
FspBI CTAG 3 cut(s) 249, 270, 393
GlaI GCGC 1 cut(s) 24
GluI GCNGC 8 cut(s) 114, 834, 837, 840, 1119, 1233, 1242, 1337
GsaI CCCAGC 1 cut(s) 1255
GsuI CTGGAG 2 cut(s) 207, 261
HaeIII GGCC 5 cut(s) 420, 695, 859, 1194, 1339
HapII CCGG 2 cut(s) 1199, 1319
HgaI GACGC 2 cut(s) 46, 270
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 38
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 5 cut(s) 200, 311, 407, 988, 1290
HpaII CCGG 2 cut(s) 1199, 1319
HphI GGTGA 3 cut(s) 238, 968, 1025
Hpy166II GTNNAC 2 cut(s) 586, 967
Hpy188I TCNGA 7 cut(s) 132, 205, 993, 1065, 1268, 1399, 1434
Hpy188III TCNNGA 5 cut(s) 186, 218, 240, 746, 1028
Hpy8I GTNNAC 2 cut(s) 586, 967
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 189, 1404
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 1345
HpyF10VI GCNNNNNNNGC 7 cut(s) 332, 426, 839, 1139, 1238, 1241, 1247
HpyF3I CTNAG 3 cut(s) 129, 216, 1167
HpySE526I ACGT 1 cut(s) 1345
Hsp92I GRCGYC 1 cut(s) 38
HspAI GCGC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 49, 454, 511, 993, 1322
LguI GCTCTTC 1 cut(s) 1434
LmnI GCTCC 2 cut(s) 340, 1189
Lsp1109I GCAGC 7 cut(s) 100, 823, 826, 845, 1105, 1228, 1244
LweI GCATC 4 cut(s) 322, 820, 1297, 1396
MaeI CTAG 3 cut(s) 249, 270, 393
MaeII ACGT 1 cut(s) 1345
MaeIII GTNAC 2 cut(s) 226, 1294
MalI GATC 5 cut(s) 51, 456, 513, 995, 1324
MboI GATC 5 cut(s) 49, 454, 511, 993, 1322
MfeI CAATTG 1 cut(s) 921
MflI RGATCY 1 cut(s) 1322
MhlI GDGCHC 2 cut(s) 257, 1252
MlsI TGGCCA 1 cut(s) 420
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 2 cut(s) 320, 1284
Mox20I TGGCCA 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 1428
MscI TGGCCA 1 cut(s) 420
MseI TTAA 3 cut(s) 56, 1008, 1037
MslI CAYNNNNRTG 1 cut(s) 1331
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 2 cut(s) 1199, 1319
MspR9I CCNGG 3 cut(s) 624, 1320, 1363
MunI CAATTG 1 cut(s) 921
MvaI CCWGG 2 cut(s) 624, 1363
MvnI CGCG 2 cut(s) 23, 1155
MwoI GCNNNNNNNGC 7 cut(s) 332, 426, 839, 1139, 1238, 1241, 1247
NciI CCSGG 1 cut(s) 1320
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 907
NdeII GATC 5 cut(s) 49, 454, 511, 993, 1322
NlaIV GGNNCC 2 cut(s) 621, 1324
NmeAIII GCCGAG 1 cut(s) 1477
NmuCI GTSAC 2 cut(s) 226, 1294
NspI RCATGY 3 cut(s) 215, 1166, 1302
NspV TTCGAA 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 1434
PdmI GAANNNNTTC 1 cut(s) 1428
PfeI GAWTC 3 cut(s) 200, 407, 988
PflMI CCANNNNNTGG 1 cut(s) 911
PfoI TCCNGGA 1 cut(s) 1318
PkrI GCNGC 8 cut(s) 115, 835, 838, 841, 1120, 1234, 1243, 1338
PleI GAGTC 2 cut(s) 319, 1284
PpsI GAGTC 2 cut(s) 319, 1284
Psp6I CCWGG 2 cut(s) 622, 1361
PspEI GGTNACC 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 1251
PspGI CCWGG 2 cut(s) 622, 1361
PspN4I GGNNCC 2 cut(s) 621, 1324
PspPI GGNCC 3 cut(s) 644, 1354, 1471
PstI CTGCAG 2 cut(s) 310, 1263
PstNI CAGNNNCTG 2 cut(s) 839, 1258
PsuI RGATCY 1 cut(s) 1322
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 1331
SapI GCTCTTC 1 cut(s) 1434
SaqAI TTAA 3 cut(s) 56, 1008, 1037
SatI GCNGC 8 cut(s) 114, 834, 837, 840, 1119, 1233, 1242, 1337
Sau3AI GATC 5 cut(s) 49, 454, 511, 993, 1322
Sau96I GGNCC 3 cut(s) 644, 1354, 1471
SchI GAGTC 2 cut(s) 320, 1284
ScrFI CCNGG 3 cut(s) 624, 1320, 1363
SduI GDGCHC 2 cut(s) 257, 1252
SfaNI GCATC 4 cut(s) 322, 820, 1297, 1396
SfcI CTRYAG 5 cut(s) 171, 306, 503, 927, 1259
Sfr274I CTCGAG 1 cut(s) 744
SfuI TTCGAA 1 cut(s) 785
SinI GGWCC 3 cut(s) 644, 1354, 1471
SlaI CTCGAG 1 cut(s) 744
SmiMI CAYNNNNRTG 1 cut(s) 1331
SmlI CTYRAG 2 cut(s) 744, 1413
SmoI CTYRAG 2 cut(s) 744, 1413
SsiI CCGC 5 cut(s) 21, 372, 485, 1188, 1336
SspMI CTAG 3 cut(s) 249, 270, 393
StyD4I CCNGG 3 cut(s) 622, 1318, 1361
StyI CCWWGG 2 cut(s) 442, 640
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 1348
TaqI TCGA 3 cut(s) 602, 745, 785
TauI GCSGC 1 cut(s) 1339
TfiI GAWTC 3 cut(s) 200, 407, 988
Tru1I TTAA 3 cut(s) 56, 1008, 1037
Tru9I TTAA 3 cut(s) 56, 1008, 1037
TscAI CASTG 3 cut(s) 112, 166, 1117
TseFI GTSAC 2 cut(s) 226, 1294
TseI GCWGC 7 cut(s) 113, 833, 836, 839, 1118, 1232, 1241
Tsp45I GTSAC 2 cut(s) 226, 1294
TspDTI ATGAA 9 cut(s) 129, 225, 288, 369, 541, 704, 1092, 1365, 1491
TspGWI ACGGA 1 cut(s) 988
TspRI CASTG 3 cut(s) 112, 166, 1117
Van91I CCANNNNNTGG 1 cut(s) 911
VpaK11BI GGWCC 3 cut(s) 644, 1354, 1471
XapI RAATTY 5 cut(s) 295, 376, 558, 711, 770
XceI RCATGY 3 cut(s) 215, 1166, 1302
XhoI CTCGAG 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 1428
XspI CTAG 3 cut(s) 249, 270, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.