Rh1CG183600

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
40200803 .. 40205515
4713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG183600.1

Sequence Viewer

Length: 1503 bp
ATGATGCAAGATAGAACCTCCACGCCCACCGAAACGACGCCGTTGGTGGCTCAGAATGATCATTTAAGAAGTGATGGGCTAATCCCTCAACTATTTACCTCTGTACCAGCTTTCAGTGAAGCTGCCTCTTATCTATCTCAGACAACTTCATTATTTACCCAATGTTTCACTGATAATTCTGTAGAACCTTCTTCTGGAGATTTTGGGGATTCCGATTTACAATCTCAGGAATTGGTGACCTTTTCATCTGGAGAAACTAGGGGCTCTCATGCTAAATCTAGTGATAATGCGTCTTCAAGTGGAAATTCATTATCTGCAGAATCATCTCATACTGCAACCGATGCTCCCTCTACACTTGATGGAACAATGGAAAACTCTCCCGCAAATTCATCTCAAACTTCTAGTGCCATTATAGAATCTAATCATGGCCAAAGTGGCATTTCTATCTTCCAAGGTCTTATTGATCGGGTGCGAAGAACTGTTCGTGGGTCTGCGGATGATATAGGATGGCTACAGCGTGATCCTACTATGCCCTCTGTTGAAGAGGGAACTGAAAGGTTCATGGAAATTCTGGGGGATATCAGGCATGGTGTTCACAGATTGCCAAACTCGATGATTTGTTTGTTGGTTCCAGGTCTTTTCAGCAACCATGGACCACTATATTTTGTGAATACAAAAATGAGTTTGTCAAAGATTGGACTGGCCTGTCATATAGCCAAAATTCATAGTGAGGCTTCAGTTGAGAAAAACGCTCGAGAGATAAAAGAATACATTGAGGAATTCTATTGGGGTTCGAAAAAGCGTGTGTTAGTTCTTGGACATAGCAAAGGGGGAATAGATGCAGCTGCTGCTATGTCGTTGTATTGGCCTGATTTGAAAGATAAGGTTGCTGGATTGGTGTTAGCACAAAGTCCATATGGTGGTAGCCCAATTGCTACAGATATCTTGCGAGAGGGACAGCTTGGTGATTATGTAAACTTACGGAAGCTAATGGAGATTCTGATCTGCAAAGTAATTAAGGGTGATTTGCAAGCTCTGGAAGATTTAACTTATGACAGAAGAAGAGAGTTTCTGAAGAAACATCCGTTGCCAAAGGAACTCCCTGTTGTTTCATTTCACACTGAAGCTGCCATTTCTCCTGCTGTGTTAGCTACATTATCTCGTGTAGCACATGCTGAGCTACCTATGGTTGCTCCTGCAGGCCAACCGGCAAAACTTCCAGTAGTGATACCTCTTGGTGCAGCTATGGCTGCCTGTGCCCAGCTTCTGCAGGTCAGATATGGCAAGAAGAGTGATGGACTCGTCACATGCTGTGATGCAGAAGTTCCGGGATCCATTGTTGTGCGGCCAAAACGTAAATTGGACCATGCCTGGATGGTTTATTCATCAATGCAAGATGACCCTTCGGAGGCAGATGCTTCTCAAGTGTGTGAAGCTCTTCTGATGTTGCTTGTAGAAGCCGAGCAGAACAAGAGAAAGGACCATGAAAGGAAAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

54.31

Weight (kDa)

5.57

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 705
Acc36I ACCTGC 1 cut(s) 1261
AccB7I CCANNNNNTGG 1 cut(s) 920
AciI CCGC 3 cut(s) 381, 494, 1345
AclWI GGATC 3 cut(s) 515, 1326, 1339
AcoI YGGCCR 2 cut(s) 427, 1346
AcsI RAATTY 5 cut(s) 304, 385, 567, 720, 779
AcuI CTGAAG 3 cut(s) 720, 1094, 1143
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 3 cut(s) 194, 920, 1408
AgsI TTSAA 3 cut(s) 297, 542, 877
AjnI CCWGG 2 cut(s) 631, 1370
AlwI GGATC 3 cut(s) 515, 1326, 1339
AlwNI CAGNNNCTG 2 cut(s) 848, 1267
Ama87I CYCGRG 1 cut(s) 753
AoxI GGCC 5 cut(s) 427, 702, 866, 1201, 1346
ApeKI GCWGC 7 cut(s) 122, 842, 845, 848, 1127, 1241, 1250
ApoI RAATTY 5 cut(s) 304, 385, 567, 720, 779
Asp700I GAANNNNTTC 1 cut(s) 1437
AspS9I GGNCC 3 cut(s) 653, 1363, 1480
AsuC2I CCSGG 1 cut(s) 1329
AsuHPI GGTGA 3 cut(s) 247, 977, 1034
AsuII TTCGAA 1 cut(s) 794
AvaI CYCGRG 1 cut(s) 753
AvaII GGWCC 3 cut(s) 653, 1363, 1480
BaeGI GKGCMC 1 cut(s) 1261
BaeI ACNNNNGTAYC 2 cut(s) 87, 120
BalI TGGCCA 1 cut(s) 429
BamHI GGATCC 1 cut(s) 1331
BanII GRGCYC 1 cut(s) 266
BauI CACGAG 1 cut(s) 1161
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 7 cut(s) 109, 832, 835, 854, 1114, 1237, 1253
BccI CCATC 5 cut(s) 68, 353, 501, 1289, 1369
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 2 cut(s) 633, 1372
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 1 cut(s) 1329
BfaI CTAG 3 cut(s) 258, 279, 402
BfmI CTRYAG 6 cut(s) 180, 315, 512, 936, 1197, 1268
BfuAI ACCTGC 1 cut(s) 1261
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 8 cut(s) 123, 843, 846, 849, 1128, 1242, 1251, 1346
BlpI GCTNAGC 1 cut(s) 1176
BlsI GCNGC 8 cut(s) 124, 844, 847, 850, 1129, 1243, 1252, 1347
Bme1390I CCNGG 3 cut(s) 633, 1329, 1372
Bme18I GGWCC 3 cut(s) 653, 1363, 1480
BmeT110I CYCGRG 1 cut(s) 753
BmgT120I GGNCC 3 cut(s) 653, 1363, 1480
BmiI GGNNCC 2 cut(s) 630, 1333
BmrFI CCNGG 3 cut(s) 633, 1329, 1372
BmsI GCATC 4 cut(s) 331, 829, 1306, 1405
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 2 cut(s) 216, 270
Bpu1102I GCTNAGC 1 cut(s) 1176
Bpu14I TTCGAA 1 cut(s) 794
BpuEI CTTGAG 1 cut(s) 1407
BpuMI CCSGG 1 cut(s) 1329
BsaBI GATNNNNATC 1 cut(s) 1001
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 451, 649
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 920, 1408
Bse118I RCCGGY 1 cut(s) 1207
Bse1I ACTGG 2 cut(s) 705, 1220
Bse8I GATNNNNATC 1 cut(s) 1001
BseBI CCWGG 2 cut(s) 633, 1372
BseDI CCNNGG 2 cut(s) 451, 649
BseGI GGATG 4 cut(s) 502, 512, 1081, 1380
BseJI GATNNNNATC 1 cut(s) 1001
BseLI CCNNNNNNNGG 3 cut(s) 194, 920, 1408
BseMII CTCAG 4 cut(s) 65, 152, 239, 1167
BseNI ACTGG 2 cut(s) 705, 1220
BseSI GKGCMC 1 cut(s) 1261
BseXI GCAGC 7 cut(s) 109, 832, 835, 854, 1114, 1237, 1253
BseYI CCCAGC 1 cut(s) 1260
BsgI GTGCAG 1 cut(s) 1260
BshFI GGCC 5 cut(s) 429, 704, 868, 1203, 1348
BsiHKCI CYCGRG 1 cut(s) 753
BsiSI CCGG 2 cut(s) 1208, 1328
BslFI GGGAC 1 cut(s) 969
BslI CCNNNNNNNGG 3 cut(s) 194, 920, 1408
BsmFI GGGAC 1 cut(s) 969
BsnI GGCC 5 cut(s) 429, 704, 868, 1203, 1348
BsoBI CYCGRG 1 cut(s) 753
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 2 cut(s) 266, 1261
Bsp143I GATC 5 cut(s) 58, 463, 520, 1002, 1331
Bsp1720I GCTNAGC 1 cut(s) 1176
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 3 cut(s) 381, 494, 1345
BspANI GGCC 5 cut(s) 429, 704, 868, 1203, 1348
BspCNI CTCAG 4 cut(s) 64, 151, 238, 1168
BspLI GGNNCC 2 cut(s) 630, 1333
BspMAI CTGCAG 3 cut(s) 319, 1201, 1272
BspMI ACCTGC 1 cut(s) 1261
BspPI GGATC 3 cut(s) 515, 1326, 1339
BspQI GCTCTTC 1 cut(s) 1443
BspT104I TTCGAA 1 cut(s) 794
BsrFI RCCGGY 1 cut(s) 1207
BsrI ACTGG 2 cut(s) 705, 1220
BssAI RCCGGY 1 cut(s) 1207
BssECI CCNNGG 2 cut(s) 451, 649
BssMI GATC 5 cut(s) 58, 463, 520, 1002, 1331
BssNI GRCGYC 1 cut(s) 38
BssSI CACGAG 1 cut(s) 1161
BssT1I CCWWGG 2 cut(s) 451, 649
Bst2BI CACGAG 1 cut(s) 1161
Bst2UI CCWGG 2 cut(s) 633, 1372
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 4 cut(s) 537, 1057, 1283, 1443
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 2 cut(s) 341, 848
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 2 cut(s) 1032, 1201
BstDEI CTNAG 4 cut(s) 51, 138, 225, 1176
BstDSI CCRYGG 1 cut(s) 649
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 4 cut(s) 502, 512, 1081, 1380
BstKTI GATC 5 cut(s) 61, 466, 523, 1005, 1334
BstMBI GATC 5 cut(s) 58, 463, 520, 1002, 1331
BstMWI GCNNNNNNNGC 7 cut(s) 341, 435, 848, 1148, 1247, 1250, 1256
BstNI CCWGG 2 cut(s) 633, 1372
BstNSI RCATGY 2 cut(s) 1175, 1311
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 3 cut(s) 631, 1327, 1370
BstSFI CTRYAG 6 cut(s) 180, 315, 512, 936, 1197, 1268
BstSLI GKGCMC 1 cut(s) 1261
BstV1I GCAGC 7 cut(s) 109, 832, 835, 854, 1114, 1237, 1253
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 1331
BstYI RGATCY 1 cut(s) 1331
BsuRI GGCC 5 cut(s) 429, 704, 868, 1203, 1348
BtgI CCRYGG 1 cut(s) 649
BtsCI GGATG 4 cut(s) 502, 512, 1081, 1380
BtsIMutI CAGTG 3 cut(s) 121, 168, 1119
BveI ACCTGC 1 cut(s) 1261
Cac8I GCNNGC 2 cut(s) 1032, 1201
CaiI CAGNNNCTG 2 cut(s) 848, 1267
Cfr10I RCCGGY 1 cut(s) 1207
Cfr13I GGNCC 3 cut(s) 653, 1363, 1480
CseI GACGC 2 cut(s) 46, 279
Csp6I GTAC 1 cut(s) 104
CviAII CATG 9 cut(s) 269, 425, 562, 587, 650, 1172, 1308, 1367, 1484
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 4 cut(s) 51, 138, 225, 1176
DpnI GATC 5 cut(s) 60, 465, 522, 1004, 1333
DpnII GATC 5 cut(s) 58, 463, 520, 1002, 1331
DrdI GACNNNNNNGTC 1 cut(s) 705
DseDI GACNNNNNNGTC 1 cut(s) 705
EaeI YGGCCR 2 cut(s) 427, 1346
Eam1104I CTCTTC 4 cut(s) 537, 1057, 1283, 1443
EarI CTCTTC 4 cut(s) 537, 1057, 1283, 1443
Eco130I CCWWGG 2 cut(s) 451, 649
Eco24I GRGCYC 1 cut(s) 266
Eco32I GATATC 2 cut(s) 580, 943
Eco47I GGWCC 3 cut(s) 653, 1363, 1480
Eco57I CTGAAG 3 cut(s) 720, 1094, 1143
Eco88I CYCGRG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 631, 1370
EcoRV GATATC 2 cut(s) 580, 943
EcoT14I CCWWGG 2 cut(s) 451, 649
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 2 cut(s) 451, 649
FaeI CATG 9 cut(s) 272, 428, 565, 590, 653, 1175, 1311, 1370, 1487
FaqI GGGAC 1 cut(s) 969
FatI CATG 9 cut(s) 268, 424, 561, 586, 649, 1171, 1307, 1366, 1483
FauI CCCGC 1 cut(s) 388
FauNDI CATATG 1 cut(s) 916
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 8 cut(s) 123, 843, 846, 849, 1128, 1242, 1251, 1346
FokI GGATG 4 cut(s) 509, 519, 1068, 1387
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 8 cut(s) 123, 843, 846, 849, 1128, 1242, 1251, 1346
FspBI CTAG 3 cut(s) 258, 279, 402
GluI GCNGC 8 cut(s) 123, 843, 846, 849, 1128, 1242, 1251, 1346
GsaI CCCAGC 1 cut(s) 1264
GsuI CTGGAG 2 cut(s) 216, 270
HaeIII GGCC 5 cut(s) 429, 704, 868, 1203, 1348
HapII CCGG 2 cut(s) 1208, 1328
HgaI GACGC 2 cut(s) 46, 279
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 9 cut(s) 272, 428, 565, 590, 653, 1175, 1311, 1370, 1487
HinfI GANTC 5 cut(s) 209, 320, 416, 997, 1299
HpaII CCGG 2 cut(s) 1208, 1328
HphI GGTGA 3 cut(s) 247, 977, 1034
Hpy166II GTNNAC 2 cut(s) 595, 976
Hpy188I TCNGA 8 cut(s) 54, 141, 214, 1002, 1074, 1277, 1408, 1443
Hpy188III TCNNGA 5 cut(s) 195, 227, 249, 755, 1037
Hpy8I GTNNAC 2 cut(s) 595, 976
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 198, 1413
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 1 cut(s) 1354
HpyF10VI GCNNNNNNNGC 7 cut(s) 341, 435, 848, 1148, 1247, 1250, 1256
HpyF3I CTNAG 4 cut(s) 51, 138, 225, 1176
HpySE526I ACGT 1 cut(s) 1354
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 9 cut(s) 272, 428, 565, 590, 653, 1175, 1311, 1370, 1487
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 5 cut(s) 58, 463, 520, 1002, 1331
LguI GCTCTTC 1 cut(s) 1443
LmnI GCTCC 2 cut(s) 349, 1198
Lsp1109I GCAGC 7 cut(s) 109, 832, 835, 854, 1114, 1237, 1253
LweI GCATC 4 cut(s) 331, 829, 1306, 1405
MaeI CTAG 3 cut(s) 258, 279, 402
MaeII ACGT 1 cut(s) 1354
MaeIII GTNAC 2 cut(s) 235, 1303
MalI GATC 5 cut(s) 60, 465, 522, 1004, 1333
MboI GATC 5 cut(s) 58, 463, 520, 1002, 1331
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 1331
MhlI GDGCHC 2 cut(s) 266, 1261
MlsI TGGCCA 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 1 cut(s) 1293
Mox20I TGGCCA 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 1437
MscI TGGCCA 1 cut(s) 429
MseI TTAA 3 cut(s) 65, 1017, 1046
MslI CAYNNNNRTG 1 cut(s) 1340
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 2 cut(s) 1208, 1328
MspR9I CCNGG 3 cut(s) 633, 1329, 1372
MunI CAATTG 1 cut(s) 930
MvaI CCWGG 2 cut(s) 633, 1372
MwoI GCNNNNNNNGC 7 cut(s) 341, 435, 848, 1148, 1247, 1250, 1256
NciI CCSGG 1 cut(s) 1329
NcoI CCATGG 1 cut(s) 649
NdeI CATATG 1 cut(s) 916
NdeII GATC 5 cut(s) 58, 463, 520, 1002, 1331
NlaIII CATG 9 cut(s) 272, 428, 565, 590, 653, 1175, 1311, 1370, 1487
NlaIV GGNNCC 2 cut(s) 630, 1333
NmeAIII GCCGAG 1 cut(s) 1486
NmuCI GTSAC 2 cut(s) 235, 1303
NspI RCATGY 2 cut(s) 1175, 1311
NspV TTCGAA 1 cut(s) 794
PaeR7I CTCGAG 1 cut(s) 753
PciSI GCTCTTC 1 cut(s) 1443
PdmI GAANNNNTTC 1 cut(s) 1437
PfeI GAWTC 4 cut(s) 209, 320, 416, 997
PflMI CCANNNNNTGG 1 cut(s) 920
PfoI TCCNGGA 1 cut(s) 1327
PkrI GCNGC 8 cut(s) 124, 844, 847, 850, 1129, 1243, 1252, 1347
PleI GAGTC 1 cut(s) 1293
PpsI GAGTC 1 cut(s) 1293
Psp6I CCWGG 2 cut(s) 631, 1370
PspEI GGTNACC 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 1260
PspGI CCWGG 2 cut(s) 631, 1370
PspN4I GGNNCC 2 cut(s) 630, 1333
PspPI GGNCC 3 cut(s) 653, 1363, 1480
PstI CTGCAG 3 cut(s) 319, 1201, 1272
PstNI CAGNNNCTG 2 cut(s) 848, 1267
PsuI RGATCY 1 cut(s) 1331
PvuII CAGCTG 1 cut(s) 845
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 1340
SapI GCTCTTC 1 cut(s) 1443
SaqAI TTAA 3 cut(s) 65, 1017, 1046
SatI GCNGC 8 cut(s) 123, 843, 846, 849, 1128, 1242, 1251, 1346
Sau3AI GATC 5 cut(s) 58, 463, 520, 1002, 1331
Sau96I GGNCC 3 cut(s) 653, 1363, 1480
SbfI CCTGCAGG 1 cut(s) 1201
SchI GAGTC 1 cut(s) 1293
ScrFI CCNGG 3 cut(s) 633, 1329, 1372
SdaI CCTGCAGG 1 cut(s) 1201
SduI GDGCHC 2 cut(s) 266, 1261
SfaNI GCATC 4 cut(s) 331, 829, 1306, 1405
SfcI CTRYAG 6 cut(s) 180, 315, 512, 936, 1197, 1268
Sfr274I CTCGAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 794
SinI GGWCC 3 cut(s) 653, 1363, 1480
SlaI CTCGAG 1 cut(s) 753
SmiMI CAYNNNNRTG 1 cut(s) 1340
SmlI CTYRAG 2 cut(s) 753, 1422
SmoI CTYRAG 2 cut(s) 753, 1422
Sse8387I CCTGCAGG 1 cut(s) 1201
SsiI CCGC 3 cut(s) 381, 494, 1345
SspMI CTAG 3 cut(s) 258, 279, 402
StyD4I CCNGG 3 cut(s) 631, 1327, 1370
StyI CCWWGG 2 cut(s) 451, 649
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 1 cut(s) 1357
TaqI TCGA 3 cut(s) 611, 754, 794
TauI GCSGC 1 cut(s) 1348
TfiI GAWTC 4 cut(s) 209, 320, 416, 997
Tru1I TTAA 3 cut(s) 65, 1017, 1046
Tru9I TTAA 3 cut(s) 65, 1017, 1046
TscAI CASTG 3 cut(s) 121, 175, 1126
TseFI GTSAC 2 cut(s) 235, 1303
TseI GCWGC 7 cut(s) 122, 842, 845, 848, 1127, 1241, 1250
Tsp45I GTSAC 2 cut(s) 235, 1303
TspDTI ATGAA 9 cut(s) 138, 234, 297, 378, 550, 713, 1101, 1374, 1500
TspGWI ACGGA 2 cut(s) 997, 1074
TspRI CASTG 3 cut(s) 121, 175, 1126
Van91I CCANNNNNTGG 1 cut(s) 920
VpaK11BI GGWCC 3 cut(s) 653, 1363, 1480
XapI RAATTY 5 cut(s) 304, 385, 567, 720, 779
XceI RCATGY 2 cut(s) 1175, 1311
XhoI CTCGAG 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 1437
XspI CTAG 3 cut(s) 258, 279, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.