Rmu_sc0037053.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037053.1
OG0009076
Physical Location & Seq
Forward (+)
1 .. 2067
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037053.1_g000001.1.cds

Sequence Viewer

Length: 560 bp
ctcctgttgttttccaggctcagaatgatcatttaagaagtgatgggctaatccctcaactatttacctctgtaccagctttcagtgaagctgcctcttatctatctcagacaacttcattatttacccaatgtttcactgataattctgtagaaccttcttctggagattttggggattccaatttacatgctcaggaattggtgaccttttcatctggagaaactaggggctctcatgctaaatctagtgataatgtgtcttcaagtggaaattcattatctgcagagtcatctcatactgcaactgatgctccctctacacttgatggaacaatggaaaactctcccgcaaattcatctcaaacttctagtgccattatagaatctaatcatggccaaagtggcatttctatcttccaagggtatttttccacattctacttattgttgtctttgtggacctatccttctaaaatcaatgttattcaagtctttcaactgaaatgtggtaaccatcagccaaaaggttttatatggtacccatcagcacataaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCAT

Protein Analysis

185

Amino Acids

19.88

Weight (kDa)

5.13

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 539
AciI CCGC 1 cut(s) 350
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 2 cut(s) 273, 354
AfaI GTAC 2 cut(s) 74, 541
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 3 cut(s) 266, 490, 499
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 79, 91
AluI AGCT 2 cut(s) 79, 91
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 2 cut(s) 273, 354
Asp718I GGTACC 1 cut(s) 539
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 216
AvaII GGWCC 1 cut(s) 461
BaeI ACNNNNGTAYC 2 cut(s) 56, 89
BalI TGGCCA 1 cut(s) 398
BanI GGYRCC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 78
BccI CCATC 4 cut(s) 37, 322, 524, 552
BciT130I CCWGG 1 cut(s) 16
BclI TGATCA 1 cut(s) 27
BfaI CTAG 3 cut(s) 227, 248, 371
BfmI CTRYAG 2 cut(s) 149, 284
BglI GCCNNNNNGGC 1 cut(s) 404
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 2 cut(s) 185, 239
Bpu10I CCTNAGC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 3 cut(s) 34, 121, 208
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 398
BshNI GGYRCC 1 cut(s) 539
BslI CCNNNNNNNGG 1 cut(s) 163
BsnI GGCC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 3 cut(s) 33, 120, 207
BspLI GGNNCC 1 cut(s) 541
BspMAI CTGCAG 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 310
BstDEI CTNAG 3 cut(s) 20, 107, 194
BstEII GGTNACC 2 cut(s) 204, 511
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 310, 404
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 193
BstPI GGTNACC 2 cut(s) 204, 511
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 2 cut(s) 149, 284
BstV1I GCAGC 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 398
BtsIMutI CAGTG 2 cut(s) 90, 137
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 73, 540
CviAII CATG 3 cut(s) 190, 238, 394
CviJI RGCY 7 cut(s) 19, 48, 79, 91, 233, 398, 522
CviKI_1 RGCY 7 cut(s) 19, 48, 79, 91, 233, 398, 522
CviQI GTAC 2 cut(s) 73, 540
DdeI CTNAG 3 cut(s) 20, 107, 194
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 461
Eco91I GGTNACC 2 cut(s) 204, 511
EcoO65I GGTNACC 2 cut(s) 204, 511
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 193, 241, 397
FaiI YATR 8 cut(s) 191, 239, 299, 382, 395, 535, 537, 554
FatI CATG 3 cut(s) 189, 237, 393
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 3 cut(s) 227, 248, 371
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 185, 239
HaeIII GGCC 1 cut(s) 398
Hin1II CATG 3 cut(s) 193, 241, 397
HinfI GANTC 3 cut(s) 178, 289, 385
HphI GGTGA 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 2 cut(s) 23, 110
Hpy188III TCNNGA 3 cut(s) 164, 196, 218
Hpy8I GTNNAC 1 cut(s) 461
HpyAV CCTTC 2 cut(s) 167, 479
HpyCH4V TGCA 2 cut(s) 286, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 404
HpyF3I CTNAG 3 cut(s) 20, 107, 194
Hsp92II CATG 3 cut(s) 193, 241, 397
KpnI GGTACC 1 cut(s) 543
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 6 cut(s) 17, 28, 89, 149, 181, 203
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 300
MaeI CTAG 3 cut(s) 227, 248, 371
MaeIII GTNAC 2 cut(s) 204, 511
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 3 cut(s) 152, 254, 408
MhlI GDGCHC 1 cut(s) 235
MlsI TGGCCA 1 cut(s) 398
MluCI AATT 5 cut(s) 144, 183, 199, 273, 354
MluNI TGGCCA 1 cut(s) 398
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 4 cut(s) 65, 78, 105, 327
Mox20I TGGCCA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 398
MseI TTAA 1 cut(s) 34
Msp20I TGGCCA 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 310, 404
NdeII GATC 1 cut(s) 27
NlaIII CATG 3 cut(s) 193, 241, 397
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 204
NspI RCATGY 1 cut(s) 193
PfeI GAWTC 2 cut(s) 178, 385
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 14
PspEI GGTNACC 2 cut(s) 204, 511
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 541
PspPI GGNCC 1 cut(s) 461
PstI CTGCAG 1 cut(s) 288
RsaI GTAC 2 cut(s) 74, 541
RsaNI GTAC 2 cut(s) 73, 540
SaqAI TTAA 1 cut(s) 34
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 235
SetI ASST 7 cut(s) 70, 81, 93, 159, 211, 466, 531
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 149, 284
SinI GGWCC 1 cut(s) 461
Sse9I AATT 5 cut(s) 144, 183, 199, 273, 354
SsiI CCGC 1 cut(s) 350
SspMI CTAG 3 cut(s) 227, 248, 371
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 420
TasI AATT 5 cut(s) 144, 183, 199, 273, 354
TfiI GAWTC 2 cut(s) 178, 385
Tru1I TTAA 1 cut(s) 34
Tru9I TTAA 1 cut(s) 34
TscAI CASTG 2 cut(s) 90, 144
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 4 cut(s) 107, 203, 266, 347
TspRI CASTG 2 cut(s) 90, 144
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 2 cut(s) 273, 354
XceI RCATGY 1 cut(s) 193
XspI CTAG 3 cut(s) 227, 248, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.