Rmu_sc0003363.1_g000040

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003363.1
Physical Location & Seq
Forward (+)
203985 .. 208488
4504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003363.1_g000040.1.cds

Sequence Viewer

Length: 1521 bp
atgtatttccggtatgcacatttaccaaaattgattgttggaaaagtcgggcaccggttaatgtttgctcagaatgatcatttaagaagtgatgggctaatccctcaactatttacctctgtaccagctttcagtgaagctgcctcttatctatctcagacaacttcattatttacccaatgtttcactgataattctgtagaaccttcttctggagattttggggattccaatttacatgctcaggaattggtgaccttttcatctggagaaactaggggctctcatgctaaatctagtgataatgtgtcttcaagtggaaattcattatctgcagagtcatctcataccgcaaccgatgctccctctacacttgatggaacaatggaaaactctcccgcaaattcatctcaaacttctagtgccattatagaatctaatcatggccaaagtggcatttctatcttccaaggtcttattgatcgggtgcgaagaactgttcgtgggtctgcggatgatataggatggctacagcgtgatcctactatgccctctgttgaagagggaactgaaaggttcatggaaattctgggggatatcaggcatggtgttcacagattgccaaactcgatggtttgtttgttggttccaggtcttttcagcaaccatggaccactatattttgtaaatacaaaaatgagtttgtcaaagcttggactggcctgtcatatagccaaaattcatagtgaggcttcagttgagaaaaacgctcgagagataaaagaatacattgaggaattctattggggttcgaaaaagcgtgtgttagttcttggacatagcaaagggggaatagatgcagctgctgctatgtcgttgtattggcctgatttgaaagataaggttgctggattggtgttagcacaaagtccatatggtggtagcccaattgctacagatatcttgcgagagggacagcttggtgattatgtaaacttacggaagctaatggagattctgatctgcaaagtaattaagggtgatttgcaagctctggaagatttaacttatgacagaagaagagagtttctgaagaaacatccgttgccaaaggaactccctgttgtttcatttcacactgaagctgccatttctcctgctgtgttagctacattatctcgcgtagcacatgctgagctacctatggttgctcccgcaggccaaccggcaaaacttccagtagtgatacctcttggcgcagctatggctgcctgtgcccagcttctgcaggtcagatatggcaagaagagtgatggactcgtcacatgctgtgatgcagaagttccgggatccattgttgtgcggccaaaacgtaaattggaccatgcctggatggtttattcatcaatgcaagatgacccttcggaggcagatgcttctcaagtgtgtgaagctcttctgatgttgcttgtagaagccgagcagaacaagagaaaggacgatgaaaggaaagatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

506

Amino Acids

55.16

Weight (kDa)

6.03

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 723
Acc36I ACCTGC 1 cut(s) 1279
AccB1I GGYRCC 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 938
AccII CGCG 1 cut(s) 1182
AciI CCGC 5 cut(s) 351, 399, 512, 1215, 1363
AclWI GGATC 3 cut(s) 533, 1344, 1357
AcoI YGGCCR 2 cut(s) 445, 1364
AcsI RAATTY 5 cut(s) 322, 403, 585, 738, 797
AcuI CTGAAG 3 cut(s) 738, 1112, 1161
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 3 cut(s) 212, 938, 1426
AgeI ACCGGT 1 cut(s) 54
AgsI TTSAA 3 cut(s) 315, 560, 895
AjnI CCWGG 2 cut(s) 649, 1388
AlwI GGATC 3 cut(s) 533, 1344, 1357
AlwNI CAGNNNCTG 2 cut(s) 866, 1285
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 5 cut(s) 445, 720, 884, 1219, 1364
ApeKI GCWGC 7 cut(s) 140, 860, 863, 866, 1145, 1259, 1268
ApoI RAATTY 5 cut(s) 322, 403, 585, 738, 797
AsiGI ACCGGT 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 1455
AspLEI GCGC 1 cut(s) 1259
AspS9I GGNCC 2 cut(s) 671, 1381
AsuC2I CCSGG 1 cut(s) 1347
AsuHPI GGTGA 3 cut(s) 265, 995, 1052
AsuII TTCGAA 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 2 cut(s) 671, 1381
BaeGI GKGCMC 2 cut(s) 54, 1279
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BalI TGGCCA 1 cut(s) 447
BamHI GGATCC 1 cut(s) 1349
BanI GGYRCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 7 cut(s) 127, 850, 853, 872, 1132, 1255, 1271
BccI CCATC 6 cut(s) 86, 371, 519, 625, 1307, 1387
BciT130I CCWGG 2 cut(s) 651, 1390
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 1347
BfaI CTAG 3 cut(s) 276, 297, 420
BfmI CTRYAG 5 cut(s) 198, 333, 530, 954, 1286
BfuAI ACCTGC 1 cut(s) 1279
BglI GCCNNNNNGGC 1 cut(s) 453
BisI GCNGC 8 cut(s) 141, 861, 864, 867, 1146, 1260, 1269, 1364
BlpI GCTNAGC 1 cut(s) 1194
BlsI GCNGC 8 cut(s) 142, 862, 865, 868, 1147, 1261, 1270, 1365
Bme1390I CCNGG 3 cut(s) 651, 1347, 1390
Bme18I GGWCC 2 cut(s) 671, 1381
BmeT110I CYCGRG 1 cut(s) 771
BmgT120I GGNCC 2 cut(s) 671, 1381
BmiI GGNNCC 3 cut(s) 53, 648, 1351
BmrFI CCNGG 3 cut(s) 651, 1347, 1390
BmsI GCATC 4 cut(s) 349, 847, 1324, 1423
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 2 cut(s) 234, 288
Bpu10I CCTNAGC 1 cut(s) 243
Bpu1102I GCTNAGC 1 cut(s) 1194
Bpu14I TTCGAA 1 cut(s) 812
BpuEI CTTGAG 1 cut(s) 1425
BpuMI CCSGG 1 cut(s) 1347
BsaBI GATNNNNATC 1 cut(s) 1019
BsaJI CCNNGG 2 cut(s) 469, 667
BsaWI WCCGGW 2 cut(s) 9, 54
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 938, 1426
Bse118I RCCGGY 2 cut(s) 54, 1225
Bse1I ACTGG 2 cut(s) 723, 1238
Bse8I GATNNNNATC 1 cut(s) 1019
BseBI CCWGG 2 cut(s) 651, 1390
BseDI CCNNGG 2 cut(s) 469, 667
BseGI GGATG 4 cut(s) 520, 530, 1099, 1398
BseJI GATNNNNATC 1 cut(s) 1019
BseLI CCNNNNNNNGG 3 cut(s) 212, 938, 1426
BseMII CTCAG 4 cut(s) 83, 170, 257, 1185
BseNI ACTGG 2 cut(s) 723, 1238
BseSI GKGCMC 2 cut(s) 54, 1279
BseXI GCAGC 7 cut(s) 127, 850, 853, 872, 1132, 1255, 1271
BseYI CCCAGC 1 cut(s) 1278
Bsh1236I CGCG 1 cut(s) 1182
BshFI GGCC 5 cut(s) 447, 722, 886, 1221, 1366
BshNI GGYRCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 4 cut(s) 10, 55, 1226, 1346
BslFI GGGAC 1 cut(s) 987
BslI CCNNNNNNNGG 3 cut(s) 212, 938, 1426
BsmFI GGGAC 1 cut(s) 987
BsnI GGCC 5 cut(s) 447, 722, 886, 1221, 1366
BsoBI CYCGRG 1 cut(s) 771
Bsp119I TTCGAA 1 cut(s) 812
Bsp1286I GDGCHC 3 cut(s) 54, 284, 1279
Bsp143I GATC 5 cut(s) 76, 481, 538, 1020, 1349
Bsp1720I GCTNAGC 1 cut(s) 1194
Bsp19I CCATGG 1 cut(s) 667
BspACI CCGC 5 cut(s) 351, 399, 512, 1215, 1363
BspANI GGCC 5 cut(s) 447, 722, 886, 1221, 1366
BspCNI CTCAG 4 cut(s) 82, 169, 256, 1186
BspFNI CGCG 1 cut(s) 1182
BspLI GGNNCC 3 cut(s) 53, 648, 1351
BspMAI CTGCAG 2 cut(s) 337, 1290
BspMI ACCTGC 1 cut(s) 1279
BspPI GGATC 3 cut(s) 533, 1344, 1357
BspQI GCTCTTC 1 cut(s) 1461
BspT104I TTCGAA 1 cut(s) 812
BspT107I GGYRCC 1 cut(s) 51
BsrFI RCCGGY 2 cut(s) 54, 1225
BsrI ACTGG 2 cut(s) 723, 1238
BssAI RCCGGY 2 cut(s) 54, 1225
BssECI CCNNGG 2 cut(s) 469, 667
BssMI GATC 5 cut(s) 76, 481, 538, 1020, 1349
BssT1I CCWWGG 2 cut(s) 469, 667
Bst2UI CCWGG 2 cut(s) 651, 1390
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 4 cut(s) 555, 1075, 1301, 1461
BstAPI GCANNNNNTGC 2 cut(s) 359, 866
BstBI TTCGAA 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 1050, 1219
BstDEI CTNAG 4 cut(s) 69, 156, 243, 1194
BstDSI CCRYGG 1 cut(s) 667
BstEII GGTNACC 1 cut(s) 253
BstF5I GGATG 4 cut(s) 520, 530, 1099, 1398
BstFNI CGCG 1 cut(s) 1182
BstHHI GCGC 1 cut(s) 1259
BstKTI GATC 5 cut(s) 79, 484, 541, 1023, 1352
BstMBI GATC 5 cut(s) 76, 481, 538, 1020, 1349
BstMWI GCNNNNNNNGC 7 cut(s) 359, 453, 866, 1166, 1265, 1268, 1274
BstNI CCWGG 2 cut(s) 651, 1390
BstNSI RCATGY 3 cut(s) 242, 1193, 1329
BstPI GGTNACC 1 cut(s) 253
BstSCI CCNGG 3 cut(s) 649, 1345, 1388
BstSFI CTRYAG 5 cut(s) 198, 333, 530, 954, 1286
BstSLI GKGCMC 2 cut(s) 54, 1279
BstUI CGCG 1 cut(s) 1182
BstV1I GCAGC 7 cut(s) 127, 850, 853, 872, 1132, 1255, 1271
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 1349
BstYI RGATCY 1 cut(s) 1349
BsuRI GGCC 5 cut(s) 447, 722, 886, 1221, 1366
BtgI CCRYGG 1 cut(s) 667
BtsCI GGATG 4 cut(s) 520, 530, 1099, 1398
BtsIMutI CAGTG 3 cut(s) 139, 186, 1137
BveI ACCTGC 1 cut(s) 1279
Cac8I GCNNGC 2 cut(s) 1050, 1219
CaiI CAGNNNCTG 2 cut(s) 866, 1285
CfoI GCGC 1 cut(s) 1259
Cfr10I RCCGGY 2 cut(s) 54, 1225
Cfr13I GGNCC 2 cut(s) 671, 1381
Csp6I GTAC 1 cut(s) 122
CspAI ACCGGT 1 cut(s) 54
CviAII CATG 9 cut(s) 239, 287, 443, 580, 605, 668, 1190, 1326, 1385
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 4 cut(s) 69, 156, 243, 1194
DpnI GATC 5 cut(s) 78, 483, 540, 1022, 1351
DpnII GATC 5 cut(s) 76, 481, 538, 1020, 1349
DrdI GACNNNNNNGTC 1 cut(s) 723
DseDI GACNNNNNNGTC 1 cut(s) 723
EaeI YGGCCR 2 cut(s) 445, 1364
Eam1104I CTCTTC 4 cut(s) 555, 1075, 1301, 1461
EarI CTCTTC 4 cut(s) 555, 1075, 1301, 1461
Eco130I CCWWGG 2 cut(s) 469, 667
Eco24I GRGCYC 1 cut(s) 284
Eco32I GATATC 2 cut(s) 598, 961
Eco47I GGWCC 2 cut(s) 671, 1381
Eco57I CTGAAG 3 cut(s) 738, 1112, 1161
Eco88I CYCGRG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 2 cut(s) 649, 1388
EcoRV GATATC 2 cut(s) 598, 961
EcoT14I CCWWGG 2 cut(s) 469, 667
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 2 cut(s) 469, 667
FaeI CATG 9 cut(s) 242, 290, 446, 583, 608, 671, 1193, 1329, 1388
FaqI GGGAC 1 cut(s) 987
FatI CATG 9 cut(s) 238, 286, 442, 579, 604, 667, 1189, 1325, 1384
FauI CCCGC 2 cut(s) 406, 1222
FauNDI CATATG 1 cut(s) 934
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 8 cut(s) 141, 861, 864, 867, 1146, 1260, 1269, 1364
FokI GGATG 4 cut(s) 527, 537, 1086, 1405
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 8 cut(s) 141, 861, 864, 867, 1146, 1260, 1269, 1364
FspBI CTAG 3 cut(s) 276, 297, 420
GlaI GCGC 1 cut(s) 1258
GluI GCNGC 8 cut(s) 141, 861, 864, 867, 1146, 1260, 1269, 1364
GsaI CCCAGC 1 cut(s) 1282
GsuI CTGGAG 2 cut(s) 234, 288
HaeIII GGCC 5 cut(s) 447, 722, 886, 1221, 1366
HapII CCGG 4 cut(s) 10, 55, 1226, 1346
HhaI GCGC 1 cut(s) 1259
Hin1II CATG 9 cut(s) 242, 290, 446, 583, 608, 671, 1193, 1329, 1388
Hin6I GCGC 1 cut(s) 1257
HinP1I GCGC 1 cut(s) 1257
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 5 cut(s) 227, 338, 434, 1015, 1317
HpaII CCGG 4 cut(s) 10, 55, 1226, 1346
HphI GGTGA 3 cut(s) 265, 995, 1052
Hpy166II GTNNAC 2 cut(s) 613, 994
Hpy188I TCNGA 7 cut(s) 72, 159, 1020, 1092, 1295, 1426, 1461
Hpy188III TCNNGA 5 cut(s) 213, 245, 267, 773, 1055
Hpy8I GTNNAC 2 cut(s) 613, 994
HpyAV CCTTC 2 cut(s) 216, 1431
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4IV ACGT 1 cut(s) 1372
HpyCH4V TGCA 8 cut(s) 17, 335, 860, 1026, 1048, 1288, 1337, 1411
HpyF10VI GCNNNNNNNGC 7 cut(s) 359, 453, 866, 1166, 1265, 1268, 1274
HpyF3I CTNAG 4 cut(s) 69, 156, 243, 1194
HpySE526I ACGT 1 cut(s) 1372
Hsp92II CATG 9 cut(s) 242, 290, 446, 583, 608, 671, 1193, 1329, 1388
HspAI GCGC 1 cut(s) 1257
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 5 cut(s) 76, 481, 538, 1020, 1349
LguI GCTCTTC 1 cut(s) 1461
LmnI GCTCC 2 cut(s) 367, 1216
Lsp1109I GCAGC 7 cut(s) 127, 850, 853, 872, 1132, 1255, 1271
LweI GCATC 4 cut(s) 349, 847, 1324, 1423
MaeI CTAG 3 cut(s) 276, 297, 420
MaeII ACGT 1 cut(s) 1372
MaeIII GTNAC 2 cut(s) 253, 1321
MalI GATC 5 cut(s) 78, 483, 540, 1022, 1351
MboI GATC 5 cut(s) 76, 481, 538, 1020, 1349
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 1 cut(s) 1349
MhlI GDGCHC 3 cut(s) 54, 284, 1279
MlsI TGGCCA 1 cut(s) 447
MluNI TGGCCA 1 cut(s) 447
MlyI GAGTC 2 cut(s) 347, 1311
MmeI TCCRAC 1 cut(s) 19
Mox20I TGGCCA 1 cut(s) 447
MroXI GAANNNNTTC 1 cut(s) 1455
MscI TGGCCA 1 cut(s) 447
MseI TTAA 4 cut(s) 59, 83, 1035, 1064
MslI CAYNNNNRTG 1 cut(s) 1358
Msp20I TGGCCA 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 863
MspI CCGG 4 cut(s) 10, 55, 1226, 1346
MspR9I CCNGG 3 cut(s) 651, 1347, 1390
MunI CAATTG 1 cut(s) 948
MvaI CCWGG 2 cut(s) 651, 1390
MvnI CGCG 1 cut(s) 1182
MwoI GCNNNNNNNGC 7 cut(s) 359, 453, 866, 1166, 1265, 1268, 1274
NciI CCSGG 1 cut(s) 1347
NcoI CCATGG 1 cut(s) 667
NdeI CATATG 1 cut(s) 934
NdeII GATC 5 cut(s) 76, 481, 538, 1020, 1349
NlaIII CATG 9 cut(s) 242, 290, 446, 583, 608, 671, 1193, 1329, 1388
NlaIV GGNNCC 3 cut(s) 53, 648, 1351
NmeAIII GCCGAG 1 cut(s) 1504
NmuCI GTSAC 2 cut(s) 253, 1321
NspI RCATGY 3 cut(s) 242, 1193, 1329
NspV TTCGAA 1 cut(s) 812
PaeR7I CTCGAG 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 1461
PdmI GAANNNNTTC 1 cut(s) 1455
PfeI GAWTC 3 cut(s) 227, 434, 1015
PflMI CCANNNNNTGG 1 cut(s) 938
PfoI TCCNGGA 1 cut(s) 1345
PinAI ACCGGT 1 cut(s) 54
PkrI GCNGC 8 cut(s) 142, 862, 865, 868, 1147, 1261, 1270, 1365
PleI GAGTC 2 cut(s) 346, 1311
PpsI GAGTC 2 cut(s) 346, 1311
Psp6I CCWGG 2 cut(s) 649, 1388
PspEI GGTNACC 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 1278
PspGI CCWGG 2 cut(s) 649, 1388
PspN4I GGNNCC 3 cut(s) 53, 648, 1351
PspPI GGNCC 2 cut(s) 671, 1381
PstI CTGCAG 2 cut(s) 337, 1290
PstNI CAGNNNCTG 2 cut(s) 866, 1285
PsuI RGATCY 1 cut(s) 1349
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 1358
SapI GCTCTTC 1 cut(s) 1461
SaqAI TTAA 4 cut(s) 59, 83, 1035, 1064
SatI GCNGC 8 cut(s) 141, 861, 864, 867, 1146, 1260, 1269, 1364
Sau3AI GATC 5 cut(s) 76, 481, 538, 1020, 1349
Sau96I GGNCC 2 cut(s) 671, 1381
SchI GAGTC 2 cut(s) 347, 1311
ScrFI CCNGG 3 cut(s) 651, 1347, 1390
SduI GDGCHC 3 cut(s) 54, 284, 1279
SfaNI GCATC 4 cut(s) 349, 847, 1324, 1423
SfcI CTRYAG 5 cut(s) 198, 333, 530, 954, 1286
Sfr274I CTCGAG 1 cut(s) 771
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 2 cut(s) 671, 1381
SlaI CTCGAG 1 cut(s) 771
SmiMI CAYNNNNRTG 1 cut(s) 1358
SmlI CTYRAG 2 cut(s) 771, 1440
SmoI CTYRAG 2 cut(s) 771, 1440
SsiI CCGC 5 cut(s) 351, 399, 512, 1215, 1363
SspMI CTAG 3 cut(s) 276, 297, 420
StyD4I CCNGG 3 cut(s) 649, 1345, 1388
StyI CCWWGG 2 cut(s) 469, 667
TaaI ACNGT 1 cut(s) 499
TaiI ACGT 1 cut(s) 1375
TaqI TCGA 3 cut(s) 629, 772, 812
TauI GCSGC 1 cut(s) 1366
TfiI GAWTC 3 cut(s) 227, 434, 1015
Tru1I TTAA 4 cut(s) 59, 83, 1035, 1064
Tru9I TTAA 4 cut(s) 59, 83, 1035, 1064
TscAI CASTG 3 cut(s) 139, 193, 1144
TseFI GTSAC 2 cut(s) 253, 1321
TseI GCWGC 7 cut(s) 140, 860, 863, 866, 1145, 1259, 1268
Tsp45I GTSAC 2 cut(s) 253, 1321
TspDTI ATGAA 9 cut(s) 156, 252, 315, 396, 568, 731, 1119, 1392, 1518
TspGWI ACGGA 2 cut(s) 1015, 1092
TspRI CASTG 3 cut(s) 139, 193, 1144
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 2 cut(s) 671, 1381
XapI RAATTY 5 cut(s) 322, 403, 585, 738, 797
XceI RCATGY 3 cut(s) 242, 1193, 1329
XhoI CTCGAG 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 1455
XspI CTAG 3 cut(s) 276, 297, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.